Skip to main content
Log in

FishSCT: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome

  • Letter to the Editor
  • Published:
Science China Life Sciences Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Cao, Y., Zhu, J., Jia, P., and Zhao, Z. (2017). scRNASeqDB: a database for RNA-Seq based gene expression profiles in human single cells. Genes 8, 368.

    Article  PubMed  PubMed Central  Google Scholar 

  • Chen, H., Yin, X., Guo, L., Yao, J., Ding, Y., Xu, X., Liu, L., Zhu, Q.H., Chu, Q., and Fan, L. (2021). PlantscRNAdb: a database for plant single-cell RNA analysis. Mol Plant 14, 855–857.

    Article  CAS  PubMed  Google Scholar 

  • Hu, Y., Tattikota, S.G., Liu, Y., Comjean, A., Gao, Y., Forman, C., Kim, G., Rodiger, J., Papatheodorou, I., dos Santos, G., et al. (2021). DRscDB: a single-cell RNA-seq resource for data mining and data comparison across species. Comput Struct Biotechnol J 19, 2018–2026.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Klee, E.W., Schneider, H., Clark, K.J., Cousin, M.A., Ebbert, J.O., Hooten, W.M., Karpyak, V.M., Warner, D.O., and Ekker, S.C. (2012). Zebrafish: a model for the study of addiction genetics. Hum Genet 131, 977–1008.

    Article  CAS  PubMed  Google Scholar 

  • Moreno, P., Fexova, S., George, N., Manning, J.R., Miao, Z., Mohammed, S., Muñoz-Pomer, A., Fullgrabe, A., Bi, Y., Bush, N., et al. (2022). Expression Atlas update: gene and protein expression in multiple species. Nucleic Acids Res 50, D129–D140.

    Article  CAS  PubMed  Google Scholar 

  • Regev, A., Teichmann, S.A., Lander, E.S., Amit, I., Benoist, C., Birney, E., Bodenmiller, B., Campbell, P., Carninci, P., Clatworthy, M., et al. (2017). The human cell atlas. eLife 6, e27041.

    Article  PubMed  PubMed Central  Google Scholar 

  • Yang, X., Tong, Y., Liu, G., Yuan, J., and Yang, Y. (2022). scAPAatlas: an atlas of alternative polyadenylation across cell types in human and mouse. Nucleic Acids Res 50, D356–D364.

    Article  CAS  PubMed  Google Scholar 

  • Zeng, J., Zhang, Y., Shang, Y., Mai, J., Shi, S., Lu, M., Bu, C., Zhang, Z., Zhang, Z., Li, Y., et al. (2022). CancerSCEM: a database of single-cell expression map across various human cancers. Nucleic Acids Res 50, D1147–D1155.

    Article  CAS  PubMed  Google Scholar 

  • Zhao, T., Lyu, S., Lu, G., Juan, L., Zeng, X., Wei, Z., Hao, J., and Peng, J. (2021). SC2disease: a manually curated database of single-cell transcriptome for human diseases. Nucleic Acids Res 49, D1413–D1419.

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported by the National Key Research and Development Program of China (2021YFD1200804 and 2018YFD0901201) and the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA24010206). We thank the Analysis and Testing Center at Institute of Hydrobiology for technical supports. This computational work in this study was supported by the Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Mijuan Shi or Xiao-Qin Xia.

Ethics declarations

Compliance and ethics The author(s) declare that they have no conflict of interest.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Guo, C., Ye, W., Shi, M. et al. FishSCT: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome. Sci. China Life Sci. 66, 2185–2188 (2023). https://doi.org/10.1007/s11427-022-2293-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11427-022-2293-4

Navigation