Abstract
Nitrogen fixation is one of the major biogeochemical contributions carried out by diazotrophic microorganisms. The goal of this research is study of posttranslational modification of dinitrogenase reductase (Fe protein), the involvement of malate and pyruvate in generation of reductant in Rhodospirillum rubrum. A procedure for the isolation of the Fe protein from cell extracts was developed and used to monitor the modification of the Fe protein in vivo. The subunit pattern of the isolated the Fe protein after sodium dodecyl sulfate–polyacrylamide gel electrophoresis was assayed by Western blot analysis. Whole-cell nitrogenase activity was also monitored during the Fe protein modification by gas chromatograpy, using the acetylene reduction assay. It has been shown, that the addition of fluoroacetate, ammonia and darkness resulted in the loss of whole-cell nitrogenase activity and the in vivo modification of the Fe protein. For fluoroacetate, ammonia and darkness, the rate of loss of nitrogenase activity was similar to that for the Fe protein modification. The addition of NADH and reillumination of a culture incubated in the dark resulted in the rapid restoration of nitrogenase activity and the demodification of the Fe protein. Fluoroacetate inhibited the nitrogenase activity of R. rubrum and resulted in the modification of the Fe protein in cells, grown on pyruvate or malate as the endogeneous electron source. The nitrogenase activity in draTG mutant (lacking DRAT/DRAG system) decreased after the addition of fluoroacetate, but the Fe protein remained completely unmodified. The results showed that the reduced state of cell, posttranslational modifications of the Fe protein and the DRAT/DRAG system are important for nitrogenase activity and the regulation of nitrogen fixation.
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References
Brostedt E, Lindblad A, Jansson J, Nordlund S (1997) Electron transport to nitrogenase in Rhodospirillum rubrum: the role of NAD(P)H as electron donor and the effect of fluoroacetate on nitrogenase activity. FEMS Microbiol Lett 150:263–267
Burris RH (1991) Nitrogenases J Biol Chem 266:9339–9342
Eisenberg MA (1953) The tricarboxylic acid cycle in Rhodospirillum rubrum. J Biol Chem 203:815–836
Elsden SR, Ormerod JG (1956) The effect of fluoroacetate on the metabolism of Rhodospirillum rubrum. Biochem J 63:691–701
Gest H, Ormerod JG, Ormerod KS (1962) Photometabolism of Rhodospirillum rubrum: light-dependent dissimilation of organic compounds to carbon dioxide and molecular hydrogen by an anaerobic citric acid cycle. Arch Biochem Biophys 97:21–33
Gorell TE, Uffen RL (1978) Reduction of nucleotide adenine dinucleotide by pyruvate: lipoate oxidoreducatse in anaerobic, dark grown Rhodospirillum rubrum mutant C. J Bacteriol 134:830–836
Grunwald SK, Ryle MJ, Lanzilotta WN, Ludden PW (2000) ADP-ribosylation of variants of Azotobacter vinelandii dinitrogenase reductase by Rhodospirillum rubrum dinitrogenase reductase ADP-ribosyltransferase. J Bacteriol 182:2597–2603
Halbleib CM, Zhang, Yaoping, Ludden PW (2000) Regulation of dinitrogenase reductase ADP-ribosyltransferase and dinirogenase reductase-activating glycohydrolase by a redox-dependent conformational change of nitrogenase Fe protein. J Biol Chem 275:3493–3500
Heinrich D, Raberg M, Fricke P, Kenny ST, Morales-Gamez L, Babu RP, O’Connor KE, Steinbüchel A (2016) Syngas-derived medium-chain-length PHA synthesis in engineered Rhodospirillum rubrum. Appl Environ Microbiol 82(20):6132–6140
Huergo LF, Merrick M, Pedrosa FO, Chubatsu LS, Araujo LM, Souza EM (2007) Ternary complex formation between AmtB, GlnZ and the nitrogenase regulatory enzyme DraG reveals a novel facet of nitrogen regulation in bacteria. Mol Microbiol 66:1523–1535
Jackson JB, Crofts AR (1968) Energy-linked reduction of nicotinamide adenine dinucleotides in cells of Rhodospirillum rubrum. Biochem Biophys Res Commun 32:908–915
Javelle A, Lupo D, Ripoche P, Fulford T, Merrick M, Winkler FK (2008) Substrate binding, deprotonation, and selectivity at the periplasmic entrance of the Escherichia coli ammonia channel AmtB. Proc Natl Acad Sci USA 105:5040–5045
Jonsson A, Teixeira PF, Nordlund S (2007) The activity of adenylyltransferase in Rhodospirillum rubrum is only affected by alpha-ketoglutarate and unmodified PII proteins, but not by glutamine, in vitro. FEBS J 274 (10):2449–2460
Kanemoto RH, Ludden PW (1984) Effect of ammonia, darkness and phenazine methosulfate on whole-cell nitrogenase activity and Fe protein modification in Rhodospirillum rubrum. J Bacteriol 158:713–720
Kanemoto RH, Ludden PW (1987) Amino acid concentrations in Rhodospirillum rubrum during expression and switch-off of nitrogenase activity. J Bacteriol 169:3035–3043
Koch B, Evans HJ (1966) Reduction of acetylene to ethylene by soybean root nodules. Plant Physiol 41:1748–1750
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Li J-D, Hu C-Z, Yoch DC (1987) Changes in amino acid and nucleotide pools of Rhodospirillum rubrum during switch-off of nitrogenase activity initiated by ammonium or darkness. J Bacteriol 169:231–237
Liang JH, Nielsen GM, Lies DP, Burris RH, Roberts GP, Ludden PW (1991) Mutations in the draT and draG genes of Rhodospirillum rubrum result in loss of regulation of nitrogenase by reversible ADP-ribosylation. J Bacteriol 173:6903–6909
Lowery RG, Ludden PW (1988) Purification and properties of dinitrogenase reductase ADPribosyltransferase from the photosynthetic bacterium Rhodospirillum rubnum. J Biol Chem 263:16714–16719
Lowery RG, Ludden PW (1989) Effect of nucleotides on the activity of dinitrogenase reductase ADPribosyltransferasefrom Rhodospirillum rubrum. Biochemistry 28:4956–4961
Lowery RG, Saari LL, Ludden PW (1986) Reversible regulation of the nitrogenase iron protein from Rhodospirillum rubrum by ADP-ribosylation in vitro. J Bacteriol 166:513–518
Ludden PW, Burries RH (1976) Activating factor for the iron protein of nitrogenase from Rhodospirillum rubrum. Science 194:424–426
Ludden PW, Burris RH (1978) Purification and properties of nitrogenase from Rhodospirillum rubrum, and evidence for phosphate, ribose and an adenine-like unit covalently bound to the iron protein. Biochem J 175:251–259
Luderitz R, Klemme JH (1977) Isolation and characterization of a membrane bound pyruvate dehydrogenase complex from the phototrophic bacterium Rhodospirillum rubrum. Z Naturforsch 32c:351–361
Moure VR, Danyal K, Yang ZY, Wendroth S, Müller-Santos M, Pedrosa FO, Scarduelli M, Gerhardt EC, Huergo LF, Souza EM, Seefeldt LC (2012) The nitrogenase regulatory enzyme dinitrogenase reductase ADP-ribosyltransferase (DraT) is activated by direct interaction with the signal transduction protein GlnB. J Bacteriol 195:279–286. https://doi.org/10.1128/JB.01517-12
Nordlund S, Hogbom M (2013) ADP-ribosylation, a mechanism regulating nitrogenase activity. FEBS J 280:3484–3490
Nordlund S, Högland L (1986) Studies of the adenylate and pyridine nucleotide pools during nitrogenase switch-off in Rhodospirillum rubrum. Plant Soil 90:203–209
Nordlund S, Noren A (1984) Dependence on divalent cations of the activation of inactive Fe-protein of nitrogenase from Rhodospirillum rubrum. Biochim Biophys Acta 791:21–27
Noren A, Nordlund S (1994) Changes in the NAD (P) H concentration caused by addition of nitrogenase switch-off effectors in Rhodospirillum rubrum G-9, as measured by fluorescence. FEBS Lett 356:43–45
Noren A, Soliman A, Nordlund S (1997) The role of NAD+ as a signal during nitrogenase switch-off in Rhodospirillum rubrum. Biochem J 322:829–832
O’Neal L, Ryu MH, Gomelsky M, Alexandre G (2017) Optogenetic manipulation of cyclic di-GMP (c-di-GMP) levels reveals the role of c-di-GMP in regulating aerotaxis receptor activity in Azospirillum brasilense. J Bacteriol 22:199–218
Ormerod JG, Ormerod KS, Gest H (1961) Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria; relationships with nitrogen metabolism. Arch Biochem Biophys 94:449–463
Paul TD, Ludden PW (1984) Adenine nucleotide level in Rhodospirillum rubrum during switch-off of nitrogenase activity. Biochem J 224:961–969
Ponnuraj RK, Rubio LM, Grunwald SK, Ludden PW (2005) NAD-, NMN-, and NADP-dependent modification of dinitrogenase reductases from Rhodospirillum rubrum and Azotobacter vinelandii. FEBS Lett 579:5751–5758
Pope MR, Murrell SA, Ludden PW (1985) Covalent modification of the iron protein of nitrogenase from Rhodospirillum rubrum by adenosine diphosphoribosylation of a specific arginine residue. Proc Natl Acad Sci USA 82(10):3173–3177
Pratt DC, Frenkel AW (1959) Studies on nitrogen fixation and photosynthesis of Rhodospirillum rubrum. Plant Physiol 34:333–337
Rabouille S, Van de Waal DB, Matthijs HC, Huisman J (2014) Nitrogen fixation and respiratory electron transport in the cyanobacterium Cyanothece under different light/dark cycles. FEMS Microbiol Ecol 87:630–638
Saari LL, Triplett EW, Ludden PW (1984) Purification and properties of the activating enzyme for iron protein of nitrogenase from the photosynthetic bacterium Rhodospirillum rubrum. J Biol Chem 258:12064–12068
Schick IHJ (1971) Regulation of photoreduction in Rhodospirillum rubrum by ammonia. Arch Mikrobiol 75:110–120
Seefeldt LC, Hoffman BH, Dean DR (2009) Mechanism of Mo-dependent nitrogenase. Annu Rev Biochem 78:701–722
Selao TT, Nordlund S, Norén A (2008) Comparative proteomic studies in Rhodospirillum rubrum grown under different nitrogen conditions. J Proteome Res 7:3267–3275
Selao TT, Edgren T, Wang H, Noren A, Nordlund S (2011) Effect of pyruvate on the metabolic regulation of nitrogenase activity in Rhodospirillum rubrum in darkness. Microbiology 157:1834–1840
Soliman A, Nordlund S (1992) Studies on the effect of NAD (H) on nitrogenase activity in Rhodospirillum rubrum. Arch Microbiol 157:431–435
Stewart WDP, Fitzgerald GP, Burris RH (1967) In situ studies on N2 fixation using the acetylene reduction technique. Proc Natl Acad Sci USA 58:2071–2078
Teixeira PF, Jonsson A, Frank M, Wang H, Nordlund S (2008) Interaction of the signal transduction protein GlnJ with the cellular targets AmtB1, GlnE and GlnD in Rhodospirillum rubrum: dependence on manganese, 2-oxoglutarate and the ADP/ATP ratio. Microbiology 154(Pt 8):2336–2347
Teixeira PF, Wang H, Nordlund S (2010) Nitrogenase switch-off and regulation of ammonium assimilation in response to light deprivation in Rhodospirillum rubrum are influenced by the nitrogen source used during growth. Journal of bacteriology 192:1463–1466
Tortajada M (2017) New waves underneath the purple strain. Microb Biotechnol 10(6):1297–1299
Wolfe DM, Zhang Y, Roberts GP (2007) Specificity and regulation of interaction between the PII and AmtB1 proteins in Rhodospirillum rubrum. J Bacteriol 189:6861–6869
Yoch DC (1979) Manganese, an essential trace element for N2 fixation by Rhodospirillum rubrum and Rhodopseudomonas capsulata: role in nitrogenase regulation. J Bacteriol 140:987–995
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Authors would like to thank the financial support of FASE, State Registration of Research Study Work is # 01201361874.
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Akentieva, N. Posttranslational modification of dinitrogenase reductase in Rhodospirillum rubrum treated with fluoroacetate. World J Microbiol Biotechnol 34, 184 (2018). https://doi.org/10.1007/s11274-018-2564-y
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DOI: https://doi.org/10.1007/s11274-018-2564-y