Skip to main content
Log in

Mutant and Overexpression Analysis of a C2H2 Single Zinc Finger Gene of Arabidopsis

  • Published:
Plant Molecular Biology Reporter Aims and scope Submit manuscript

Abstract

The goal of this work was to characterize an Arabidopsis C2H2 single zinc finger gene, named AtZFP11, that is similar to SUPERMAN (SUP) and RABBIT EARS (RBE). No altered phenotype was observed in mutants analyzed that were derived through TILLING nor a T-DNA insertion into the exon of AtZFP11. Plants derived by intercrossing AtZFP11 to SUP and RBE alleles did not display any phenotype that could be attributed to AtZFP11. Transgenic plants constitutively overexpressing the AtZFP11 protein displayed severe abnormalities. Phenotypically normal transgenic plants that contained an ecdysone-inducible promoter system fused to the AtZFP11 gene were recovered. These transgenic plants displayed similar abnormalities once induced with methoxyfenozide. Microarray and RT-PCR analysis of gene expression in plants overexpressing AtZFP11 after induction revealed changes in gene expression of a number of genes involved in auxin, jasmonic acid, and stress responses. These results suggest that AtZFP11 plays a role in regulation of gene expression and may be functionally redundant or that conditions needed to observe phenotypic differences in the mutant plants were not provided in the course of these experiments.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Bereterbide A, Hernould M, Castera S, Mouras A (2001) Inhibition of cell proliferation, cell expansion and differentiation by the Arabidopsis SUPERMAN gene in transgenic tobacco plants. Planta 214(1):22–29

    Article  PubMed  CAS  Google Scholar 

  • Bowman JL, Sakai H, Jack T, Weigel D, Mayer U, Meyerowitz EM (1992) SUPERMAN, a regulator of floral homeotic genes in Arabidopsis. Development 114(3):599–615

    PubMed  CAS  Google Scholar 

  • Brodsky LI, Drachev AL, Leontovich AM, Feranchuk SI (1993) A novel method of multiple alignment of biopolymer sequences. Bio Syst 30(1–3):65–79

    CAS  Google Scholar 

  • Chrispeels HE, Oettinger H, Janvier N, Tague BW (2000) AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation. Plant Mol Biol 42(2):279–290

    Article  PubMed  CAS  Google Scholar 

  • Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16(6):735–743

    Article  PubMed  CAS  Google Scholar 

  • Colbert T, Till BJ, Tompa R, Reynolds SH, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S (2001) High-throughput screening for induced point mutations. Plant Physiol 126:480–484

    Article  PubMed  CAS  Google Scholar 

  • Dai S, Petruccelli S, Ordiz MI, Zhang Z, Chen S, Beachy RN (2003) Functional analysis of RF2a, a rice transcription factor. J Biol Chem 278(38):36396–36402

    Article  PubMed  CAS  Google Scholar 

  • Dathan N, Zaccaro L, Esposito S, Isernia C, Omichinski JG, Riccio A, Pedone C, Di Blasio B, Fattorusso R, Pedone PV (2002) The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif. Nucleic Acids Res 30(22):4945–4951

    Article  PubMed  CAS  Google Scholar 

  • Dinkins R, Pflipsen C, Thompson A, Collins GB (2002) Ectopic expression of an Arabidopsis single zinc finger gene in tobacco results in dwarf plants. Plant Cell Physiol 43(7):743–750

    Article  PubMed  CAS  Google Scholar 

  • Dinkins RD, Pflipsen C, Collins GB (2003) Expression and deletion analysis of an Arabidopsis SUPERMAN-Like zinc finger gene. Plant Sci 165:33–41

    Article  CAS  Google Scholar 

  • Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D (2004) The role of JAGGED in shaping lateral organs. Development 131(5):1101–1110

    Article  PubMed  CAS  Google Scholar 

  • Ditta G, Pinyopich A, Robles P, Pelaz S, Yanofsky MF (2004) The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identity. Curr Biol 14(21):1935–1940

    Article  PubMed  CAS  Google Scholar 

  • Englbrecht CC, Schoof H, Boehm S (2004) Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics 5(1):39

    Article  PubMed  Google Scholar 

  • Eshed Y, Baum SF, Bowman JL (1999) Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99(2):199–209

    Article  PubMed  CAS  Google Scholar 

  • Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J (2002) Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics 162(3):1445–1456

    PubMed  CAS  Google Scholar 

  • Golz JF, Hudson A (1999) YABBY's claw to the fore. Curr Biol 9:R861–R863

    Article  PubMed  CAS  Google Scholar 

  • Hiratsu K, Ohta M, Matsui K, Ohme-Takagi M (2002) The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers. FEBS Lett 514:351–354

    Article  PubMed  CAS  Google Scholar 

  • Hiratsu K, Matsui K, Koyama T, Ohme-Takagi M (2003) Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J 34(5):733–739

    Article  PubMed  CAS  Google Scholar 

  • Ito T, Sakai H, Meyerowitz EM (2003) Whorl-specific expression of the SUPERMAN gene of Arabidopsis is mediated by cis elements in the transcribed region. Curr Biol 13(17):1524–1530

    Article  PubMed  CAS  Google Scholar 

  • Jiang CJ, Aono M, Tamaoki M, Maeda S, Sugano S, Mori M, Takatsuji H (2008) SAZ, a new SUPERMAN-like protein, negatively regulates a subset of ABA-responsive genes in Arabidopsis. Mol Genet Genomics 279(2):183–192. doi:10.1007/s00438-007-0306-1

    Article  PubMed  CAS  Google Scholar 

  • Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4:403–410

    Article  PubMed  CAS  Google Scholar 

  • Krizek BA, Lewis MW, Fletcher JC (2006) RABBIT EARS is a second-whorl repressor of AGAMOUS that maintains spatial boundaries in Arabidopsis flowers. Plant J 45(3):369–383

    Article  PubMed  CAS  Google Scholar 

  • Liljegren SJ, Ditta GS, Eshed Y, Savidge B, Bowman JL, Yanofsky MF (2000) SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis. Nature 404(6779):766–770

    Article  PubMed  CAS  Google Scholar 

  • Lowry JA, Atchley WR (2000) Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J Mol Evol 50(2):103–115

    PubMed  CAS  Google Scholar 

  • Meissner RC, Jin H, Cominelli E, Denekamp M, Fuertes A, Greco R, Kranz HD, Penfield S, Petroni K, Urzainqui A, Martin C, Paz-Ares J, Smeekens S, Tonelli C, Weisshaar B, Baumann E, Klimyuk V, Marillonnet S, Patel K, Speulman E, Tissier AF, Bouchez D, Jones JJ, Pereira A, Wisman E (1999) Function search in a large transcription factor gene family in Arabidopsis: assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes. Plant Cell 11(10):1827–1840

    Article  PubMed  CAS  Google Scholar 

  • Nakagawa H, Jiang C-J, Sakakibara H, Kojima M, Honda I, Ajisaka H, Nishijima T, Koshioka M, Homma T, Mander LN, Takatsuji H (2005) Overexpression of a petunia zinc-finger gene alters cytokinin metabolism and plant forms. Plant J 41(4):512–523

    Article  PubMed  CAS  Google Scholar 

  • Nibau C, Di Stilio VS, Wu HM, Cheung AY (2011) Arabidopsis and Tobacco superman regulate hormone signalling and mediate cell proliferation and differentiation. J Exp Bot 62(3):949–961. doi:10.1093/jxb/erq325

    Article  PubMed  CAS  Google Scholar 

  • Ohno CK, Reddy GV, Heisler MG, Meyerowitz EM (2004) The Arabidopsis JAGGED gene encodes a zinc finger protein that promotes leaf tissue development. Development 131(5):1111–1122

    Article  PubMed  CAS  Google Scholar 

  • Ohta M, Matsui K, Hiratsu K, Shinshi H, Ohme-Takagi M (2001) Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13(8):1959–1968

    Article  PubMed  CAS  Google Scholar 

  • Payne T, Johnson SD, Koltunow AM (2004) KNUCKLES (KNU) encodes a C2H2 zinc-finger protein that regulates development of basal pattern elements of the Arabidopsis gynoecium. Development 131(15):3737–3749

    Article  PubMed  CAS  Google Scholar 

  • Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF (2000) B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 405(6783):200–203

    Article  PubMed  CAS  Google Scholar 

  • Pinyopich A, Ditta GS, Savidge B, Liljegren SJ, Baumann E, Wisman E, Yanofsky MF (2003) Assessing the redundancy of MADS-box genes during carpel and ovule development. Nature 424(6944):85–88

    Article  PubMed  CAS  Google Scholar 

  • Ren S, Johnston JS, Shippen DE, McKnight TD (2004) TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis. Plant Cell 16(11):2910–2922

    Article  PubMed  CAS  Google Scholar 

  • Ririe KM, Rasmussen RP, Wittwer CT (1997) Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal Biochem 245(2):154–160

    Article  PubMed  CAS  Google Scholar 

  • Robson F, Costa MM, Hepworth SR, Vizir I, Pineiro M, Reeves PH, Putterill J, Coupland G (2001) Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants. Plant J 28(6):619–631

    Article  PubMed  CAS  Google Scholar 

  • Sakai H, Medrano LJ, Meyerowitz EM (1995) Role of SUPERMAN in maintaining Arabidopsis floral whorl boundaries. Nature 378(6553):199–203

    Article  PubMed  CAS  Google Scholar 

  • Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B, Weigel D, Lohmann JU (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37(5):501–506

    Article  PubMed  CAS  Google Scholar 

  • Tague BW, Goodman HM (1995) Characterization of a family of Arabidopsis zinc finger protein cDNAs. Plant Mol Biol 28(2):267–279

    Article  PubMed  CAS  Google Scholar 

  • Tague BW, Gallant P, Goodman HM (1997) Expression analysis of an Arabidopsis C2H2 zinc finger protein gene. Plant Mol Biol 32(5):785–796

    Article  Google Scholar 

  • Takatsuji H (1996) A single amino acid determines the specificity for the target sequence of two zinc-finger proteins in plants. Biochem Biophys Res Commun 224(1):219–223

    Article  PubMed  CAS  Google Scholar 

  • Takatsuji H (1999) Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol Biol 39(6):1073–1078

    Article  PubMed  CAS  Google Scholar 

  • Takatsuji H, Mori M, Benfey PN, Ren L, Chua NH (1992) Characterization of a zinc finger DNA-binding protein expressed specifically in Petunia petals and seedlings. EMBO J 11(1):241–249

    PubMed  CAS  Google Scholar 

  • Takeda S, Matsumoto N, Okada K (2004) RABBIT EARS, encoding a SUPERMAN-like zinc finger protein, regulates petal development in Arabidopsis thaliana. Development 131(2):425–434

    Article  PubMed  CAS  Google Scholar 

  • Tavva VS, Dinkins RD, Palli SR, Collins GB (2006) Development of a methoxyfenozide-responsive gene switch for applications in plants. Plant J 45(3):457–469

    Article  PubMed  CAS  Google Scholar 

  • Tavva VS, Dinkins RD, Palli SR, Collins GB (2007) Development of a tightly regulated and highly inducible ecdysone receptor gene switch for plants through the use of retinoid X receptor chimeras. Transgenic Res 16(5):599–612

    Article  PubMed  CAS  Google Scholar 

  • Tavva VS, Palli SR, Dinkins RD, Collins GB (2008) Improvement of a monopartite ecdysone receptor gene switch and demonstration of its utility in regulation of transgene expression in plants. FEBS J 275(9):2161–2176

    Article  PubMed  CAS  Google Scholar 

  • Teakle GR, Manfield IW, Graham JF, Gilmartin PM (2002) Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol 50(1):43–57

    Article  PubMed  CAS  Google Scholar 

  • Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Young K, Taylor NE, Henikoff JG, Comai L, Henikoff S (2003) Large-scale discovery of induced point mutations with high-throuput TILLING. Genome Res 13:524–530

    Article  PubMed  CAS  Google Scholar 

  • Vollbrecht E, Springer PS, Goh L, Buckler ES, Martienssen R (2005) Architecture of floral branch systems in maize and other grasses. Nature 436:1119–1126

    Article  PubMed  CAS  Google Scholar 

  • Yanagisawa S (1995) A novel DNA-binding domain that may form a single zinc finger motif. Nucleic Acids Res 23(17):3403–3410

    Article  PubMed  CAS  Google Scholar 

  • Yanagisawa S (2004) Dof domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plants. Plant Cell Physiol 45(4):386–391

    Article  PubMed  CAS  Google Scholar 

  • Yanagisawa S, Schmidt R (2000) Diversity and disimilarity among recognition sequences of Dof transcription factors. Plant J 17:209–214

    Article  Google Scholar 

  • Yoshioka K, Fukushima S, Yamazaki T, Yoshida M, Takatsuji H (2001) The plant zinc finger protein ZPT2-2 has a unique mode of DNA interaction. J Biol Chem 276(38):35802–35807

    Article  PubMed  CAS  Google Scholar 

  • Yun JY, Weigel D, Lee I (2002) Ectopic expression of SUPERMAN suppresses development of petals and stamens. Plant Cell Physiol 43(1):52–57

    Article  PubMed  CAS  Google Scholar 

  • Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136(1):2621–2632

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

The authors gratefully acknowledge Adam Barnes, Marisa Bellcastro, Jessica Menk, and Jeanne Prather for technical assistance, Ray Stevens for plant care, and Drs. Sharyn Perry and Ling Yuan for manuscript reviews. This paper (No. 06-06-148) is published with the approval of the Director of the Kentucky Agricultural Experiment Station.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Randy D. Dinkins.

Electronic supplementary materials

Below is the link to the electronic supplementary material.

Supplementary Table 1

Affymetrix probe set that displayed two-fold change or greater in the microarray experiment. (DOC 212 kb)

Supplementary Table 2

Affymetrix probe sets displaying two-fold change or greater when comparing p2300VGCfEVY:AtZFP11 methoxyfenozide induced plants with the DMSO treated control. (DOC 238 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Dinkins, R.D., Tavva, V.S., Palli, S.R. et al. Mutant and Overexpression Analysis of a C2H2 Single Zinc Finger Gene of Arabidopsis. Plant Mol Biol Rep 30, 99–110 (2012). https://doi.org/10.1007/s11105-011-0320-7

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11105-011-0320-7

Keywords

Navigation