Abstract
Leptin has a pleiotropic effect on regulating appetite, energy metabolism, growth, reproduction, body composition and immunity. This property supports leptin and its receptor as candidate genes for evaluating genetic polymorphisms to associate with growth, milk yield and other economic traits. The aim of this study is to characterize the leptin receptor gene in Bubalus bubalis, to identify single-nucleotide polymorphism (SNP) sites in different coding and non-coding regions and to analyse potential associations between SNPs identified and the body measurements traits of growing buffalo heifers. A group of 64 animals were genotyped by direct sequencing and twenty-eight SNPs were detected. A sequence analysis revealed the presence of nine interesting SNPs in gene sequence. The association analysis of polymorphisms with the body measurements traits of growing buffalo heifers shows significant statistical effects on chest depth and sacrum height. Therefore according to the results obtained from this study, the leptin receptor gene appears to have potential effects on the body measurement traits of Bubalus bubalis.
Similar content being viewed by others
References
Houseknecht KL, Baile CA, Matteri RL, Spurlock ME (1998) The biology of leptin: a review. J Anim Sci 76:1405–1420
Houseknecht KL, Portocarrero CP (1998) Leptin and its receptors: regulators of whole-body energy homeostasis. Domest Anim Endocrinol 15:457–475
Ahima RS, Flier JS (2000) Adipose tissue as an endocrine organ. Trends Endocrinol Metab 11:327–332
Matarese G, Moschos S, Mantzoros CS (2005) Leptin in immunology. J Immunol 174:3137–3142
Zhang F, Chen Y, Heiman M, DiMarchi R (2005) Leptin: structure, function and biology. In: Litwack P (ed) Vitam horm. Elsevier, Amsterdam, pp 345–372
Tartaglia LA (1997) The leptin receptor. J Biol Chem 272:6093–6096
Tartaglia LA, Dembski M, Wang X, Deng N, Culpepper J, Devos R, Richards GJ, Campfield LA et al (1995) Identification and expression cloning of a leptin receptor, OB-R. Cell 83:1263–1271
Cioffi JA, Shafer AW, Zupancic TJ, Smith-Gbur J, Mikhail A, Platika D, Snodgrass HR (1996) Novel B219/OB receptor isoforms: possible role of leptin in hematopoiesis and reproduction. Nat Med 2:585–589
Gorska E, Popko K, Stelmaszczyk-Emmel A, Ciepiela O, Kucharska A, Wasik M (2010) Leptin receptors. Eur J Med Res 15:50–54
Chua SC Jr, Koutras IK, Han L, Liu SM, Kay J, Young SJ, Chung WK, Leibel RL (1997) Fine structure of the murine leptin receptor gene: splice site suppression is required to form two alternatively spliced transcripts. Genomics 45:264–270
Pfister-Genskow M, Hayes H, Eggen A, Bishop MD (1997) The leptin receptor (LEPR) gene maps to bovine chromosome 3q33. Mamm Genome 8:227
De Matteis G, Scatà MC, Grandoni F, Petrera F, Abeni F, Catillo G, Napolitano F, Moioli B (2012) Association analyses of single nucleotide polymorphisms in leptin and leptin receptor genes on milk and morphological traits in Holstein cows. Open J Anim Sci 2:174–182
Napolitano F, De Matteis G, Catillo G, Moioli B, Abeni FP (2010) Polymorphisms in the leptin receptor gene are associated to change in immunological parameters in dairy cows during peripartum. In: Germany Justus Liebig Universitaet Giessen (eds), Proceedings of the 9th World congress on genetics applied to livestock production, Leipzing
Liefers SC, Verkamp RF, te Pas MFW, Delavaud C, Chilliard Y, Van der Lende T (2004) A missense mutation in the leptin receptor gene is associated with leptin concentrations during late pregnancy. Anim Genet 35:138–141
Agarwal R, Rout PK, Singh SK (2009) Leptin : a biomolecule for enhancing livestock productivity. Indian J Biotechnol 8:169–176
Terzano GM, Mazzi M, d’Elisi MG, Cuscunà FP, Borghese A, Martiniello P, Pacelli C (2007) Effect of intensive or extensive systems on buffalo heifers performances: body measurements and respective indices. Ital J Anim Sci 6(2):1237–1240
Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG (2012) Primer3-new capabilities and interfaces. Nucleic Acids Res 1(40):15
Barendse W, Harrison BE, Bunch RJ, Thomas MB (2008) Variation at the Calpain 3 gene is associated with meat tenderness in zebu and composite breeds of cattle. BMC Genet 9:41
Sherman A, Nkrumah JD, Murdoch BM, Li C, Wang Z, Fu A, Moore S (2008) Polymorphisms and haplotypes in the bovine NPY, GHR, GHRL, IGF2, UCP2, and UCP3 genes and their associations with measures of growth, performance, feed efficiency and carcass merit in beef cattle. J Anim Sci 86:1–16
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Soc Ser B 57:289–300
Hüebner C, Petermann I, Browning BL, Shelling AN, Ferguson LR (2007) Triallelic single nucleotide polymorphisms and genotyping error in genetic epidemiology studies: MDR1 (ABCB1) G2677/T/A as an example. Cancer Epidemiol Biomar 16:1185–1192
Duffield GE (2003) DNA microarray analyses of circadian timing: the genomic basis of biological time. J Neuroendocrinol 15:991–1002
Sukumaran S, Xue B, Jusko WJ, Dubois DC, Almon RR (2010) Circadian variations in gene expression in rat abdominal adipose tissue and relationship to physiology. Physiol Genomics 42A:141–152
Albrecht U (2012) Timing to perfection: the biology of central and peripheral circadian clocks. Neuron 74:246–260
Kawachi H, Yang SH, Hamano A, Matsui T, Smith SB, Yano H (2007) Molecular cloning and expression of bovine (Bos taurus) leptin receptor isoform mRNAs. Comp Biochem Phys B 148:167–173
Clément K, Vaisse C, Lahlou N, Cabrol S, Pelloux V, Cassuto D, Gourmelen M, Dina C, Chambaz J, Lacorte JM, Basdevant A, Bougnères P, Lebouc Y, Froguel P, Guy-Grand B (1998) A mutation in the human leptin receptor gene causes obesity and pituitary dysfunction. Nature 392:398–401
Guo Y, Chen H, Lan X, Zhang B, Pan C, Zhang L, Zhang C, Zhao M (2008) Novel SNPs of bovine LEPR gene and their association with growth traits. Biochem Genet 46:828–834
Capon F, Allen MH, Ameen M, Burden AD, Tillman D, Barker JN, Trembath RC (2004) A synonymous SNP of the corneodesmosin gene leads to increased mRNA stability and demonstrates association with psoriasis across diverse ethnic groups. Hum Mol Genet 13:2361–2368
Nackley AG, Shabalina SA et al (2006) Human Catechol-O- Methyltrasferase haplotypes modulate protein expression by altering mRNA secondary structure. Science 13:1930–1933
Vaisse C, Halaas JL, Horvath CM, Darnell JE Jr, Stoffel M et al (1996) Leptin activation of Stat3 in the hypothalamus of wild-type and ob/ob mice but not db/db mice. Nat Genet 14:95–97
Maor G, Rochwerger M, Segev Y et al (2002) Leptin acts as a growth factor on the chondrocytes of skeletal growth centers. J Bone Miner Res 17:1034–1043
Ornan EM, Ben-Ami M (2009) The role of leptin in bone development and growth. In: Gertler A (ed) Leptin and leptin antagonists. Landes Bioscence, Austin, pp 83–90
Acknowledgments
This research was funded by the Italian Ministry of Agriculture in the framework of GENZOOT project.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
De Matteis, G., Scatà, M.C., Catillo, G. et al. Characterization of leptin receptor gene in Bubalus bubalis and association analysis with body measurement traits. Mol Biol Rep 42, 1049–1057 (2015). https://doi.org/10.1007/s11033-014-3844-8
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11033-014-3844-8