Abstract
Pyramiding QTL from multiple sources for FHB resistance presents an opportunity to enhance the FHB resistance of elite wheat germplasm. Mapping FHB resistance QTL directly in wheat breeding populations would eliminate the need for purpose-built mapping populations and thus accelerate marker-assisted pyramiding efforts. In this study, we demonstrate that multiple QTL for FHB resistance can be mapped directly in early-generation breeding populations by application of identical-by-descent (IBD)-based linkage mapping. IBD-based linkage analysis was conducted using 565 segregating F1 progeny derived from 28 four-way crosses among Fhb1 donor lines and multiple native sources of resistance including Lyman, Overland, Ernie, and Freedom. A total of 15 QTL for FHB resistance were mapped on chromosomes 1A, 1B, 2A, 3A, 3B, 4A, 4B, 4D, 5A, 6A, 6D, and 7D, including known loci Fhb1, Fhb5, and Rht-B1. QTL conferring native resistance in the cultivars Lyman and Overland are mapped for the first time in this study, including a QTL on chromosome 1AS (Qfhb.sdsu-1A) explaining between 4.5 and 9.9 % of the phenotypic variance in all evaluations. Marker haplotypes for these QTL regions can be used to conduct marker-assisted selection and fixation of resistance alleles in subsequent generations of these breeding populations.
Similar content being viewed by others
References
Abate ZA, Liu S, McKendry AL (2008) Quantitative trait loci associated with deoxynivalenol content and kernel quality in the soft red winter wheat “Ernie”. Crop Sci 48(4):1408–1418
Ali MB, Ibrahim AMH, Malla S, Rudd J, Hays DB (2013) Family-based QTL mapping of heat stress tolerance in primitive tetraploid wheat (Triticum turgidum L.). Euphytica 192(2):189–203
Anderson JA (2007) Marker-assisted selection for fusarium head blight resistance in wheat. Int J Food Microbiol 119:51–53
Anderson JA, Stack RW, Liu S, Waldron BL, Fjeld AD, Coyne C, Moreno-Sevilla B, Fetch JM, Song QJ, Cregan PB, Frohberg RC (2001) DNA markers for Fusarium head blight resistance QTLs in two wheat populations. Theor Appl Genet 102(8):1164–1168
Bai G, Shaner G (2004) Management and resistance in wheat and barley to Fusarium head blight. Annu Rev Phytopathol 42:135–161
Bates D, Maechler M, Bolker B, Walker S (2013) lme4: linear mixed-effects models using Eigen and S4. R package version 1.0-4. http://CRAN.R-project.org/package=lme4
Beavis WD (1998) QTL analyses: power, precision, and accuracy. In: Paterson AH (ed) Molecular dissection of complex traits. CRC Press, Boca Raton, pp 145–162
Bernardo R (2008) Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci 48(5):1649–1664
Buerstmayr H, Ban T, Anderson JA (2009) QTL mapping and marker-assisted selection for Fusarium head blight resistance in wheat: a review. Plant Breed 128(1):1–26
Burlakoti RR, Mergoum M, Kianian SF, Adhikari TB (2009) Combining different resistance components enhances resistance to Fusarium head blight in spring wheat. Euphytica 172(2):197–205
Cai J, Bai G, Jin F, St Amand P, Bockus W, Baenziger S (2013) Effects of Fhb1 on resistance to wheat FHB in different hard winter wheats. In: Canty S, Clark A, Salat Y, Van Sanford D (eds) Proceedings of the 2013 national Fusarium head blight forum. Milwaukee, WI, p 12
Cavanagh CR, Chao S, Wang S, Huang BE, Stephen S, Kiani S, Forrest K, Saintenac C, Brown-Guedira GL, Akhunova A, See D, Bai G, Pumphrey M, Tomar L, Wong D, Kong S, Reynolds M, Lopez da Silva M, Bockelman H, Talber L, Anderson J, Dreisigacker S, Baenziger S, Carter A, Korzun V, Morrell PL, Dubcovsky J, Morell M, Sorrells ME, Hayden MJ, Akhunov E (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci USA 110(20):8057–8062
Crepieux S, Lebreton C, Flament P, Charmet G (2005) Application of a new IBD-based QTL mapping method to common wheat breeding population: analysis of kernel hardness and dough strength. Theor Appl Genet 111(7):1409–1419
Eckard JT, Gonzalez-Hernandez JL, Chao S, St Amand P, Bai G (2014) Construction of dense linkage maps “on the fly” using early generation wheat breeding populations. Mol Breed. doi:10.1007/s11032-014-0116-1
Furrer R, Nychka D, Sain S (2013) Fields: tools for spatial data. R package version 6.8. http://CRAN.R-project.org/package=fields
Green P, Falls K, Crooks S (1990) Documentation for CRI-MAP, version 2.4: www.animalgenome.org
Guedira M, Brown-Guedira G, Van Sanford D, Sneller C, Souza E, Marshall D (2010) Distribution of Rht genes in modern and historic winter wheat cultivars from the Eastern and Central USA. Crop Sci 50(5):1811–1822
Gupta A, Lipps PE, Campbell KG, Sneller CH (2001) Identification of QTL associated with resistance to FHB in Ning 7840 and Freedom. In: 2001 National Fusarium head blight forum proceedings (p 175)
Holzapfel J, Mohler V, Haeberle J, Schweizer G, Miedaner T, Voss H-H, Korzun V, Hartl L (2008) Genome distribution of QTL for Fusarium head blight resistance in European wheat germplasm. In: Appels R, Eastwood R, Lagudah E, Langridge P, Mackay M, McIntyre L, and Sharp P (eds) Proceedings of 11th international wheat genetic symposium, Brisbane, QLD, Australia, 24–29 August 2008. Sydney University Press, Sydney
Jannink JL, Bink MCAM, Jansen RC (2001) Using complex plant pedigrees to map valuable genes. Trends Plant Sci 6(8):337–342
Jansen RC, Jannink JL, Beavis WD (2003) Mapping quantitative trait loci in plant breeding populations: use of parental haplotype sharing. Crop Sci 43(3):829–834
Jin F, Zhang D, Bockus W, Baenziger PS, Carver B, Bai G (2013) Fusarium head blight resistance in U.S. winter wheat cultivars and elite breeding lines. Crop Sci 53(5):2006–2013
Liu S, Abate ZA, Lu H, Musket T, Davis GL, McKendry AL (2007) QTL associated with Fusarium head blight resistance in the soft red winter wheat Ernie. Theor Appl Genet 115(3):417–427
Liu S, Hall MD, Griffey CA, McKendry AL (2009) Meta-analysis of QTL associated with Fusarium head blight resistance in wheat. Crop Sci 49(6):1955–1968
Liu S, Griffey CA, Hall MD, McKendry AL, Chen J, Brooks WS, Brown-Guedira G, Van Sanford D, Schmale DG (2013) Molecular characterization of field resistance to Fusarium head blight in two US soft red winter wheat cultivars. Theor Appl Genet 126(10):2485–2498
Löffler M, Schön CC, Miedaner T (2009) Revealing the genetic architecture of FHB resistance in hexaploid wheat (Triticum aestivum L.) by QTL meta-analysis. Mol Breed 23(3):473–488
Mesterházy Á, Bartók T, Kászonyi G, Varga M, Tóth B, Varga J (2005) Common resistance to different Fusarium spp. causing Fusarium head blight in wheat. Eur J Plant Pathol 112(3):267–281
Miedaner T, Voss H-H (2008) Effect of dwarfing genes on Fusarium head blight resistance in two sets of near-isogenic lines of wheat and check cultivars. Crop Sci 48(6):2115–2122
Miedaner T, Wilde F, Steiner B, Buerstmayr H, Korzun V, Ebmeyer E (2006) Stacking quantitative trait loci (QTL) for Fusarium head blight resistance from non-adapted sources in an European elite spring wheat background and assessing their effects on deoxynivalenol (DON) content and disease severity. Theor Appl Genet 112(3):562–569
Morris N, Stein C (2012) Model-free linkage analysis of a quantitative trait. Stat Hum Genet Methods Protoc 850:301–316
Piepho HP, Mohring J, Melchinger AE, Buchse A (2008) BLUP for phenotypic selection in plant breeding and variety testing. Euphytica 161:209–228
Rosyara UR, Gonzalez-Hernandez JL, Glover KD, Gedye KR, Stein JM (2009) Family-based mapping of quantitative trait loci in plant breeding populations with resistance to Fusarium head blight in wheat as an illustration. Theor Appl Genet 118(8):1617–1631
S.A.G.E. (2012) Statistical analysis of genetic epidemiology. Release 6.3: http://darwin.cwru.edu
Schmolke M, Zimmermann G, Buerstmayr H, Schweizer G, Miedaner T, Korzun V, Ebmeyer E, Hartl L (2005) Molecular mapping of Fusarium head blight resistance in the winter wheat population Dream/Lynx. Theor Appl Genet 111:747–756
Shi JR, Xu DH, Yang HY, Lu QX, Ban T (2008) DNA marker analysis for pyramided of Fusarium head blight (FHB) resistance QTLs from different germplasm. Genetica 133(1):77–84
Singh AK, Knox RE, Clarke FR, Clarke JM, Somers DJ, Fedak G, Singh A, DePauw R (2008) Fusarium head blight QTL mapping in durum wheat and Triticum carthlicum sources of resistance. In: Appels R, Eastwood R, Lagudah E, Langridge P, Mackay M, McIntyre L, Sharp P (eds) Proceedings of 11th international wheat genetic symposium, Brisbane, QLD, Australia, 24–29 August 2008. Sydney, Sydney University Press
Sneller C, Gupta A, Lipps P, Campbell K (2001) Mapping QTL for fusarium head blight resistance from wheat genotypes Freedom and Ning 7840. In: Fedak G, Choo A (eds) Canadian workshop on Fusarium head blight, Ottawa, ON, 3–5 November 2001. AAFC Publisher, Ottawa, ON
Sneller CH, Mather DE, Crepieux S (2009) Analytical approaches and population types for finding and utilizing QTL in complex plant populations. Crop Sci 49(2):363–380
Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109(6):1105–1114
Srinivasachary Gosman N, Steed A, Hollins TW, Bayles R, Jennings P, Nicholson P (2009) Semi-dwarfing Rht-B1 and Rht-D1 loci of wheat differ significantly in their influence on resistance to Fusarium head blight. Theor Appl Genet 118(4):695–702
Stack RW, Mcmullen MP (1998) A visual scale to estimates severity of Fusarium head blight in wheat. Fargo, ND
Verbeke G, Molenberghs G (2003) The use of score tests for inference on variance components. Biometrics 59(2):254–262
Wang T, Elston R (2005) Two-level Haseman–Elston regression for general pedigree data analysis. Genet Epidemiol 22:12–22
Würschum T (2012) Mapping QTL for agronomic traits in breeding populations. Theor Appl Genet 125(2):201–210
Xie C, Gessler DD, Xu S (1998) Combining different line crosses for mapping quantitative trait loci using the identical by descent-based variance component method. Genetics 149(2):1139–1146
Yang Z, Gilbert J, Fedak G, Somers D (2005a) Genetic characterization of QTL associated with resistance to Fusarium head blight in a doubled-haploid spring wheat population. Genome 196:187–196
Yang J, Bai G, Shaner GE (2005b) Novel quantitative trait loci (QTL) for Fusarium head blight resistance in wheat cultivar Chokwang. Theor Appl Genet 111(8):1571–1579
Zhang X, Bai G, Bockus W, Ji X, Pan H (2012) Quantitative trait loci for Fusarium head blight resistance in U.S. hard winter wheat cultivar Heyne. Crop Sci 52(3):1187–1194
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Eckard, J.T., Gonzalez-Hernandez, J.L., Caffe, M. et al. Native Fusarium head blight resistance from winter wheat cultivars ‘Lyman,’ ‘Overland,’ ‘Ernie,’ and ‘Freedom’ mapped and pyramided onto ‘Wesley’-Fhb1 backgrounds. Mol Breeding 35, 6 (2015). https://doi.org/10.1007/s11032-015-0200-1
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s11032-015-0200-1