Abstract
Genetic diversity of populations stored ex situ or in situ can be altered due to the management practices they are subjected to. In this paper, we compare populations of two common bean (Phaseolus vulgaris L.) landraces grown on farms with material collected from the same farms and now kept in two ex situ collections (CIAT and REGEN) with the purpose to monitor any changes that have occurred due to ex situ conservation. The diversity was measured using seven bean microsatellite markers. Further phenotypic and developmental traits were registered in a field experiment. Compared with the in situ populations, the ex situ ones had a lower level of gene diversity and we suggest that this is due to the regeneration process. Most of the phenotypic traits did not differ significantly between ex situ and in situ populations, although for yield and 100-seed weight, the CIAT material showed significant lower values. We assume that these populations have gone through an adaptational change. Overall, the conservation ex situ has been successful in maintaining the majority of the adaptations found in the landraces studied, however, the probable loss of genetic diversity that we have observed, suggest that protocols for the regeneration process must be carefully worked out if the majority of alleles are to be preserved for the future. This study also highlights the complementarity of ex situ and in situ conservation methods in order to preserve landrace adaptations and to capture new, useful diversity generated in in situ populations.
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References
M.A. Altieri L.C. Merrick (1987) ArticleTitleIn situ conservation of crop genetic resources through maintenance of traditional farming systems Econ. Bot. 41 86–96
P.K. Bretting M.P. Widrlechner (1995) Genetic markers and plant genetic resource management J. Janick (Eds) Plant Breeding Reviews, vol. 13. John Wiley and Sons Inc New York, Chichester 11–71
A.H.D. Brown (1999) The genetic structure of crop landraces and the challenge to conserve them in situ on farms S.B. Brush (Eds) Genes in the Field. On-Farm Conservation of Crop Diversity IPGRI, IDRC, Lewis Publishers Boca Raton, London, New York and Washington, DC 9–47
A.H.D. Brown C.L. Brubaker J.P. Grace (1997) ArticleTitleRegeneration of germplasm samples: wild versus cultivated plant species Crop Sci. 37 7–13
Brush S. (1997). Genetic erosion of crop populations in centers of diversity: a revision. In: Serwinski J., Faberová I. (eds), Proceedings of the Technical Meeting on the Methodology of the FAO World Information and Early Warning System on Plant Genetic Resources, Held at the Research Institute of Crop Production, Prague, Czech Republic: Available from: http://apps3.fao.org/views/Prague/Paper5.htm
S.D. Brush (1991) ArticleTitleA farmer-based approach to conserving crop germplasm Econ. Bot. 45 153–165
J.I. Cohen J.T. Williams D.L. Plucknett H. Shands (1991) ArticleTitleEx situ conservation of plant genetic resources: global developments and environmental concerns Science 253 866–872
A.H. del Rio J.B. Bamberg Z. Huaman (1997) ArticleTitleAssessing changes in the genetic diversity of potato genebanks. 1. Effects of seed increase Theor. Appl. Genet. 95 191–198 Occurrence Handle10.1007/s001220050547
S.L. Dellaporta J. Wood J.R. Hicks (1983) ArticleTitleA plant DNA minipreparation: Version II Plant Mol. Biol. Rep. 1 19–21
M. Etisham-Ul-Haq T.R. Allnutt C. Smith-Ramýrez M.F. Gardner J.J. Armesto A.C. Newton (2001) ArticleTitlePatterns of genetic variation in in and ex situ populations of the threatened Chilean vine Berberidopsis corallina, detected using RAPD markers Ann. Bot. 87 813–821 Occurrence Handle10.1006/anbo.2001.1420
E. Gaitan-Solis M.C. Duque K.J. Edwards J. Tohme (2002) ArticleTitleMicrosatellite repeats in common bean (Phaseolus vulgaris): Isolation, characterization, and cross-species amplification in Phaseolus ssp Crop Sci. 42 2128–2136
P. Gepts (1993) ArticleTitleThe use of molecular and biochemical markers in crop evolution studies Evol. Biol. 27 51–94
T.J. Gilliland R. Coll E. Calsyn M. De Loose M.J.T. Eijk Particlevan I. Roldan-Ruiz (2000) ArticleTitleEstimating genetic conformity between related ryegrass (Lolium) varieties. 1. Morphology and biochemical characterisation Mol. Breed. 6 569–580 Occurrence Handle10.1023/A:1011361731545
D.O. González N. Palacios G. Gallego J. Tohme (1995) Protocolo Para Marcadores Moleculares Unidad de Biotecnologýá CIAT, Cali
Goudet J. (2002). Fstat: A Program to Estimate and Test Gene Diversities and Fixation Indices. Version 2.9.3.2. Institut d’Ecologie, Bâtiment de Biologie, Université de Lausanne, CH-1015 Dorigny: Available from http://www.unil.ch/izea/ softwares/fstat.html
A. Hamann D. Zink W. Nagl (1995) ArticleTitleMicrosatellite fingerprinting in the genus Phaseolus Genome 38 507–515
Hammer K., Diederichsen A., Spahillari M. (1999). Basic studies toward strategies for conservation of plant genetic resources. In: Serwinski J., Faberová I. (ed). Proceedings of the Technical Meeting on the Methodology of the FAO World Information and Early Warning System on Plant Genetic Resources, Held at the Research Institute of Crop Production, Prague: Available from: http://apps3 fao.org/views/Prague/Paper4.htm
R. Hidalgo S. Beebe (1997) Phaseolus Beans D. Fuccillo L. Sears P. Stapleton (Eds) Biodiversity in Trust Conservation and Use of Plant Genetic Resources in CGIAR Centers. Cambridge University Press Cambridge 139–155
F. Kebebew Y. Tsehaye T. McNeilly (2001) ArticleTitleMorphological and farmers cognitive diversity of barley (Hordeum vulgare L [Poaceae]) at Bale and North Shewa of Ethiopia Genet Resour. Crop Evol. 48 467–481 Occurrence Handle10.1023/A:1012082812073
Lenné J., Weltzien E.R., Stenhouse J. (1997). A role for ICRISAT in enhancing and maintaining genetic resources on-farm. In: Sperling L., Loevinsohn M. (eds), Using Diversity: Enhancing and Maintaining Genetic Resources On-Farm, IDRC: Available from: http://www.idrc.ca/library/ document/104582/lenne.html
D. Louette A. Charrier J. Berthaud (1997) ArticleTitleIn situ conservation of maize in Mexico: Genetic diversity and maize seed management in a traditional community Econ. Bot. 51 20–38
N. Maxted B.V. Ford-Lloyd J.G. Hawkes (1997) Complementary conservation strategies N. Maxted B.V. Ford-Lloyd J.G. Hawkes (Eds) Plant Genetic Conservation: The In-situ Approach. Chapman and Hall London 15–40
N. Maxted L. Guarino L. Myer E.A Chiwona (2002) ArticleTitleTowards a methodology for on-farm conservation of plant genetic resources Genet. Resour. Crop Evol. 49 31–46 Occurrence Handle10.1023/A:1013896401710
I. Métais C. Aubry B. Hamon R. Jalouzot (2000) ArticleTitleDescription and analysis of genetic diversity between commercial bean lines (Phaseolus vulgaris L.). Theor Appl Genet. 101 1207–1214 Occurrence Handle10.1007/s001220051599
I. Métais B. Hamon R. Jalouzot D. Peltier (2002) ArticleTitleStructure and level of genetic diversity in various bean types evidenced with microsatellite markers isolated from a genomic enriched library Theor. Appl. Genet. 104 1346–1352 Occurrence Handle10.1007/s00122-002-0901-9 Occurrence Handle12582590
G. Muñoz G. Giraldo J.F. De Soto (1993) Descriptores varietales: arroz, maíz, frijol y sorgo Centro Internacional de Agricultura Tropical (CIAT) Cali
H.K. Parzies W. Spoor R.A. Ennos (2000) Genetic diversity of barley landrace accessions (Hordeum vulgare ssp. vulgare) conserved for different lengths of time in ex situ genebanks Heredity 84 476–486
A.R. Piergiovanni G. Laghetti (1999) ArticleTitleThe common bean landraces from Basilicata (Southern Italy): an example of integrated approach applied to genetic resources management Genet. Resour. Crop Evol. 46 47–52 Occurrence Handle10.1023/A:1008641731573
Richard C.J. (1998). Genetic Structure of Regeneration Populations of Lolium multiflorum. TEKTRAN, Agricultural Research Service, United States Department of Agriculture: Available from: http://www.nal.usda.gov/ttic/ tektran/data/000008/15/0000081582.html
I. Roldán-Ruiz F.A. Eeuwijk Particlevan T.J. Gilliland P. Dubreuil C. Dillmann J. Lallemand M. De Loose C.P. Baril (2001) ArticleTitleA comparative study of molecular and morphological methods of describing relationships between perennial ryegrass (Lolium perenne L.) varieties Theor. Appl. Genet 103 1138–1150 Occurrence Handle10.1007/s001220100571
InstitutionalAuthorNameSAS (2000) JMP® Statistics and Graphics Guide Version 4 SAS Institute Cary, NC
Schneider S., Roessli D., Excoffier L. 2000. Arlequin Version 2.000: Available from: http://anthro.unige.ch/ arlequin
Serwinski J. (1997). Reporting on the assessment of plant genetic erosion. In: Serwinski J., Faberová I. (ed). Proceedings of the Technical Meeting on the Methodology of the FAO World Information and Early Warning System on Plant Genetic Resources, Held at the Research Institute of Crop Production, Prague: Available from: http://apps3.fao.org/ views/Prague/Paper1.htm
S.P. Singh (2001) ArticleTitleBroadening the genetic base of common bean cultivars: A review Crop Sci. 41 1659–1675
S.P. Singh J.A. Gutiérrez A. Molina C. Urrea P. Gepts (1991) ArticleTitleGenetic diversity in cultivated common bean. II Marker-based analysis of morphological and agronomic traits Crop Sci. 31 23–29
B.S. Weir C.C. Cockerham (1984) ArticleTitleEstimating F-statistics for the analysis of population structure Evolution 38 1358–1370
K. Yu S.J. Park V. Poysa (1999) ArticleTitleAbundance and variation of microsatellite DNA sequences in beans (Phaseolus and Vigna) Genome 42 27–34 Occurrence Handle10.1139/gen-42-1-27
S.P.L. Zeuli L. Sergio P. Perrino (1995) ArticleTitleChanges in the genetic structure of wheat germplasm accessions during seed rejuvenation Plant Breed. 114 193–198
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Gómez, O.J., Blair, M.W., Frankow-Lindberg, B.E. et al. Comparative Study of Common Bean ( Phaseolus vulgarisL.) Landraces Conserved ex situ in Genebanks and in situ by Farmers. Genet Resour Crop Evol 52, 371–380 (2005). https://doi.org/10.1007/s10722-005-2249-x
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DOI: https://doi.org/10.1007/s10722-005-2249-x