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Gene structure and comparative and phylogenetic analyses of Catla catla CYP1A full-length cDNA and its responsiveness to benzo(a)pyrene and copper sulphate at early developmental stages

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Abstract

In the present study, full-length CYP1A cDNA from Catla catla (Catla) has been identified, and its real-time quantitative reverse transcription PCR (qRT-PCR) expression has been evaluated in different tissues, developmental stages (0, 3, 6, 12 and 24 h and 5, 7 and 9 days post-fertilization) and copper sulphate and benzo(a)pyrene (BaP)-treated 5-day post-fertilization (dpf) larvae (6 to 6.5 mm). Various structural, comparative and phylogenetic analyses of the deduced amino acid sequence revealed that the identified gene of Catla belongs to the CYP1A1 subfamily. Among different tissues of Catla, the highest CYP1A expression was observed in the kidney followed by the liver, muscle, gill, intestine and brain. CYP1A mRNA expression was detected during all the larval developmental stages, including the unfertilized egg with the highest expression on 9 dpf. BaP (3.5 ppb) and copper sulphate (sublethal dose 0.516 ppm) challenge test for 96 h to Catla larvae revealed the highest CYP1A1 expression at 48 h post-challenge. CYP1A1 transcript also showed a concentration-dependent increase in expression following exposure at 1.75 and 3.5 ppb of BaP for 48 h. Its expression profiling indicates that it is functional at early developmental stages. It can also be used to develop a specific biomarker tool for monitoring environmental pollution.

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Acknowledgements

The authors are thankful to the Director, Central Institute of Fisheries Education, Mumbai, India, for providing all the facilities for the present work

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  1. Central Inland Fisheries Research Institute, Barrackpore, 700120, India

    Kavita Kumari

  2. Central Institute of Fisheries Education, Versova, Mumbai, 400061, India

    Kavita Kumari, Gireesh-Babu Pathakota & Gopal Krishna

  3. Dr. Rajendra Prasad Central Agricultural University, Pusa 848125, Samastipur, Bihar, India

    Shivendra Kumar

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Kumari, K., Pathakota, GB., Kumar, S. et al. Gene structure and comparative and phylogenetic analyses of Catla catla CYP1A full-length cDNA and its responsiveness to benzo(a)pyrene and copper sulphate at early developmental stages. Fish Physiol Biochem 44, 95–108 (2018). https://doi.org/10.1007/s10695-017-0416-6

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