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Detection of quantitative trait loci regulating seed yield potential in two interspecific S. bicolor2 × S. halepense subpopulations

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Abstract

Perennial sorghum cropping offers substantial economic and ecological benefits, conserving fuel, water, and soil. To be perennial in temperate climates, a sorghum plant must over-winter and produce new growth the following spring—a trait derived from the weedy species Sorghum halepense. We have introduced perenniality from S. halepense into a S. bicolor background and identified QTL affecting eight seed yield-related traits and their linkage relationships. Interval mapping in this BC1F2 population derived from S. bicolor × S. halepense revealed a total of 80 QTL with LOD scores greater than 2.5 for the eight traits, with a range of 1 to 13 QTL per trait. Additional QTL were detected in multiple-QTL analyses. The traits mapped in this study showed diverse genetic complexity; the pattern of one major plus several minor QTL was observed for most traits, and traits varied in the number of QTL and direction of allelic effects. For four traits evaluated across locations, some QTL detected in one of the two locations had virtually no effect in the other, suggesting an environmental influence on QTL expression. The results contribute to fundamental knowledge of the genetic architecture underlying seed yield and may support development of high yielding perennial grain sorghum varieties.

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The datasets generated during and/or analysed during the current study are available from the corresponding author on request.

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Funding

This work was funded in whole or part by the United States Agency for International Development (USAID) Bureau for Resilience and Food Security under Agreement # AID-OAAA-13-00044 as part of Feed the Future Innovation Lab for Climate Resilient Sorghum. Any opinions, findings, conclusions, or recommendations expressed here are those of the authors alone.

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All authors contributed to and approved the final manuscript. SC conceived the study, generated the population, and contributed to experimental setup and phenotyping, manuscript review; PN contributed to phenotyping, data analyses, and manuscript write-up, WK contributed to phenotyping, mapping, marker identification, and data analyses; AP co-conceived the study, contributed to phenotyping, marker identification, data interpretation, and manuscript review.

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Correspondence to Pheonah Nabukalu.

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Nabukalu, P., Kong, W., Cox, T.S. et al. Detection of quantitative trait loci regulating seed yield potential in two interspecific S. bicolor2 × S. halepense subpopulations. Euphytica 217, 13 (2021). https://doi.org/10.1007/s10681-020-02734-3

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  • DOI: https://doi.org/10.1007/s10681-020-02734-3

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