Skip to main content
Log in

The copper-inducible ComR (YcfQ) repressor regulates expression of ComC (YcfR), which affects copper permeability of the outer membrane of Escherichia coli

  • Published:
BioMetals Aims and scope Submit manuscript

Abstract

The pathway of copper entry into Escherichia coli is still unknown. In an attempt to shed light on this process, a lux-based biosensor was utilized to monitor intracellular copper levels in situ. From a transposon-mutagenized library, strains were selected in which copper entry into cells was reduced, apparent as clones with reduced luminescence when grown in the presence of copper (low-glowers). One low-glower had a transposon insertion in the comR gene, which encodes a TetR-like transcriptional regulator. The mutant strain could be complemented by the comR gene on a plasmid, restoring luminescence to wild-type levels. ComR did not regulate its own expression, but was required for copper-induction of the neighboring, divergently transcribed comC gene, as shown by real-time quantitative PCR and with a promoter-lux fusion. The purified ComR regulator bound to the promoter region of the comC gene in vitro and was released by copper. By membrane fractionation, ComC was shown to be localized in the outer membrane. When grown in the presence of copper, ∆comC cells had higher periplasmic and cytoplasmic copper levels, compared to the wild-type, as assessed by the activation of the periplasmic CusRS sensor and the cytoplasmic CueR sensor, respectively. Thus, ComC is an outer membrane protein which lowers the permeability of the outer membrane to copper. The expression of ComC is controlled by ComR, a novel, TetR-like copper-responsive repressor.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Ausubel RM, Brent R, Kingston RE, Moore DD, Smith JA, Struhl K (1995) Current protocols in molecular biology. John, New York

    Google Scholar 

  • Bishop RE, Gibbons HS, Guina T, Trent MS, Miller SI, Raetz CR (2000) Transfer of palmitate from phospholipids to lipid A in outer membranes of gram-negative bacteria. EMBO J 19:5071–5080

    Article  PubMed  CAS  Google Scholar 

  • Bordoli L, Kiefer F, Arnold K, Benkert P, Battey J, Schwede T (2009) Protein structure homology modeling using SWISS-MODEL workspace. Nat Protoc 4:1–13

    Article  PubMed  CAS  Google Scholar 

  • Brown CT, Callan CG Jr (2004) Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli. Proc Natl Acad Sci USA 101:2404–2409

    Article  PubMed  CAS  Google Scholar 

  • Changela A, Chen K, Xue Y, Holschen J, Outten CE, O’Halloran TV, Mondragon A (2003) Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR. Science 301:1383–1387

    Article  PubMed  CAS  Google Scholar 

  • Egler M, Grosse C, Grass G, Nies DH (2005) Role of the extracytoplasmic function protein family sigma factor RpoE in metal resistance of Escherichia coli. J Bacteriol 187:2297–2307

    Article  PubMed  CAS  Google Scholar 

  • Franke S, Grass G, Rensing C, Nies DH (2003) Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli. J Bacteriol 185:3804–3812

    Article  PubMed  Google Scholar 

  • Grass G, Thakali K, Klebba PE, Thieme D, Muller A, Wildner GF, Rensing C (2004) Linkage between catecholate siderophores and the multicopper oxidase CueO in Escherichia coli. J Bacteriol 186:5826–5833

    Article  PubMed  CAS  Google Scholar 

  • Harrison MD, Jones CE, Solioz M, Dameron CT (2000) Intracellular copper routing: the role of copper chaperones. Trends Biochem Sci 25:29–32

    Article  PubMed  CAS  Google Scholar 

  • Kloosterman TG, van der Kooi-Pol MM, Bijlsma JJ, Kuipers OP (2007) The novel transcriptional regulator SczA mediates protection against Zn2+ stress by activation of the Zn2+-resistance gene czcD in Streptococcus pneumoniae. Mol Microbiol 65:1049–1063

    Article  PubMed  CAS  Google Scholar 

  • Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL (2005) pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol 187:304–319

    Article  PubMed  CAS  Google Scholar 

  • Munson GP, Lam DL, Outten FW, O’Halloran TV (2000) Identification of a copper-responsive two-component system on the chromosome of Escherichia coli K-12. J Bacteriol 182:5864–5871

    Article  PubMed  CAS  Google Scholar 

  • Nies DH (2003) Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiol Rev 27:313–339

    Article  PubMed  CAS  Google Scholar 

  • Orth P, Schnappinger D, Hillen W, Saenger W, Hinrichs W (2000) Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system. Nat Struct Biol 7:215–219

    Article  PubMed  CAS  Google Scholar 

  • Outten FW, Outten CE, Hale J, O’Halloran TV (2000) Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue. CueR J Biol Chem 275:31024–31029

    Article  CAS  Google Scholar 

  • Outten FW, Huffman DL, Hale JA, O’Halloran TV (2001) The independent cue and cus systems confer copper tolerance during aerobic and anaerobic growth in Escherichia coli. J Biol Chem 276:30670–30677

    Article  PubMed  CAS  Google Scholar 

  • Parkhill J, Ansari AZ, Wright JG, Brown NL, O’Halloran TV (1993) Construction and characterization of a mercury-independent MerR activator (MerRAC): transcriptional activation in the absence of Hg(II) is accompanied by DNA distortion. EMBO J 12:413–421

    Google Scholar 

  • Petersen C, Moller LB (2000) Control of copper homeostasis in Escherichia coli by a P-type ATPase, CopA, and a MerR-like transcriptional activator, CopR. Gene 261:289–298

    Article  PubMed  CAS  Google Scholar 

  • Pomposiello PJ, Bennik MH, Demple B (2001) Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate. J Bacteriol 183:3890–3902

    Article  PubMed  CAS  Google Scholar 

  • Rae TD, Schmidt PJ, Pufahl RA, Culotta VC, O’Halloran TV (1999) Undetectable intracellular free copper: the requirement of a copper chaperone for superoxide dismutase. Science 284:805–808

    Article  PubMed  CAS  Google Scholar 

  • Rensing C, Grass G (2003) Escherichia coli mechanisms of copper homeostasis in a changing environment. FEMS Microbiol Rev 27:197–213

    Article  PubMed  CAS  Google Scholar 

  • Rensing C, Fan B, Sharma R, Mitra B, Rosen BP (2000) CopA: an Escherichia coli Cu(I)-translocating P-type ATPase. Proc Natl Acad Sci USA 97:652–656

    Article  PubMed  CAS  Google Scholar 

  • Richmond CS, Glasner JD, Mau R, Jin H, Blattner FR (1999) Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res 27:3821–3835

    Article  PubMed  CAS  Google Scholar 

  • Rogowsky PM, Close TJ, Chimera JA, Shaw JJ, Kado CI (1987) Regulation of the vir genes of Agrobacterium tumefaciens plasmid pTiC58. J Bacteriol 169:5101–5112

    PubMed  CAS  Google Scholar 

  • Rosen J, Hellenas KE (2002) Analysis of acrylamide in cooked foods by liquid chromatography tandem mass spectrometry. Analyst 127:880–882

    Article  PubMed  CAS  Google Scholar 

  • Singh SK, Grass G, Rensing C, Montfort WR (2004) Cuprous oxidase activity of CueO from Escherichia coli. J Bacteriol 186:7815–7817

    Article  PubMed  CAS  Google Scholar 

  • Stoyanov JV, Hobman JL, Brown NL (2001) CueR (YbbI) of Escherichia coli is a MerR family regulator controlling expression of the copper exporter CopA. Mol Microbiol 39:502–512

    Article  PubMed  CAS  Google Scholar 

  • Stoyanov JV, Magnani D, Solioz M (2003) Measurement of cytoplasmic copper, silver, and gold with a lux biosensor shows copper and silver, but not gold, efflux by the CopA ATPase of Escherichia coli. FEBS Lett 546:391–394

    Article  PubMed  CAS  Google Scholar 

  • Towbin H, Staehelin T, Gordon J (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci USA 76:4350–4354

    Article  PubMed  CAS  Google Scholar 

  • Yoshida Y, Furuta S, Niki E (1993) Effects of metal chelating agents on the oxidation of lipids induced by copper and iron. Biochim Biophys Acta 1210:81–88

    PubMed  CAS  Google Scholar 

  • Yu Z, Reichheld SE, Savchenko A, Parkinson J, Davidson AR (2010) A comprehensive analysis of structural and sequence conservation in the TetR family transcriptional regulators. J Mol Biol 400:847–864

    Article  PubMed  CAS  Google Scholar 

  • Zhang XS, Garcia-Contreras R, Wood TK (2007) YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity. J Bacteriol 189:3051–3062

    Article  PubMed  CAS  Google Scholar 

  • Zheng M, Wang X, Templeton LJ, Smulski DR, LaRossa RA, Storz G (2001) DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. J Bacteriol 183:4562–4570

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank Thomas Weber for expert technical assistance and the National BioResource Project (NIG, Japan) for providing strain JD27538. This work was supported by Grant 3100A0_122551 from the Swiss National Foundation and grants from the International Copper Association and the Swiss State Secretary for Education & Research.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Marc Solioz.

Additional information

Mélanie Mermod and David Magnani have contributed equally to this work

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (PDF 179 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Mermod, M., Magnani, D., Solioz, M. et al. The copper-inducible ComR (YcfQ) repressor regulates expression of ComC (YcfR), which affects copper permeability of the outer membrane of Escherichia coli . Biometals 25, 33–43 (2012). https://doi.org/10.1007/s10534-011-9510-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10534-011-9510-x

Keywords

Navigation