Abstract
Mycobacteriumchubuense strain NBB4 can grow on both alkanes and alkenes as carbon sources, and was hypothesised to be an effective bioremediation agent for chlorinated aliphatic pollutants. In this study, the ability of NBB4 to biodegrade vinyl chloride (VC), cis-dichloroethene (cDCE) and 1,2-dichloroethane (DCA) was investigated under pure-culture conditions and in microcosms. Ethene-grown NBB4 cells were capable of biodegrading VC and cDCE, while ethane-grown cells could biodegrade cDCE and DCA. The stoichiometry of inorganic chloride release (1 mol/mol in each case) indicated that VC was completely dechlorinated, while cDCE and DCA were only partially dechlorinated, yielding chloroacetate in the case of DCA, and unknown metabolites in the case of cDCE. The apparent maximum specific activities (k) of whole cells against ethene, cDCE, ethane and DCA were 93 ± 4.6, 89 ± 18, 39 ± 5.5, and 4.8 ± 0.9 nmol/min/mg protein, respectively, while the substrate affinities (KS) of whole cells with the same substrates were 2.0 ± 0.15, 46 ± 11, 11 ± 0.33 and 4.0 ± 3.2 μM, respectively. In microcosms containing contaminated aquifer sediments and groundwater, NBB4 cells removed 85-95% of the pollutants (cDCE or DCA at 2 mM) within 24 h, and the cells remained viable for >1 month. Due to its favourable kinetic parameters, and robust survival and biodegradation activities, strain NBB4 is a promising candidate for bioremediation of chlorinated aliphatic pollutants.
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References
Acworth RI (2001) Physical and chemical properties of a DNAPL contaminated zone in a sand aquifer. Quart J Eng Geol Hydrogeol 34:85–98
Alvarez-Cohen L, Speitel GE Jr. (2001) Kinetics of aerobic cometabolism of chlorinated solvents. Biodegradation 12:105–126
Arp DJ, Yeager CM, Hyman MR (2001) Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene. Biodegradation 12:81–103
Azizian MF, Istok JD, Semprini L (2005) Push-pull test evaluation of the in situ aerobic cometabolism of chlorinated ethenes by toluene-utilizing microorganisms. Water Sci Technol 52:35–40
Bergmann JG, Sanik JJ (1957) Determination of trace amounts of chlorine in naphtha. Anal Chem 29:241–243
Bone TL, Balkwill DL (1988) Morphological and cultural comparison of microorganisms in surface soil and subsurface sediments at a pristine study site in Oklahoma. Microb Ecol 16:49–64
Bursill D, Cunliffe D, Moore M, Burch M, Davies L, Cooper M (2004) National health and medical research council, Australian drinking water guidelines, 6th ed. http://www.nhmrc.gov.au
Chang HL, Alvarez-Cohen L (1996) Biodegradation of individual and multiple chlorinated aliphatic hydrocarbons by methane-oxidizing cultures. Appl Environ Microbiol 62:3371–3377
Coleman NV, Mattes TE, Gossett JM, Spain JC (2002a) Biodegradation of cis-dichloroethene as the sole carbon source by a beta-proteobacterium. Appl Environ Microbiol 68:2726–2730
Coleman NV, Mattes TE, Gossett JM, Spain JC (2002b) Phylogenetic and kinetic diversity of aerobic vinyl chloride-assimilating bacteria from contaminated sites. Appl Environ Microbiol 68:6162–6171
Coleman NV, Bui NB, Holmes AJ (2006) Soluble di-iron monooxygenase gene diversity in soils, sediments and ethene enrichments. Environ Microbiol 8:1228–1239
Coleman NV, Yau S, Wilson NL, Nolan LM, Migocki MD, Ly M-A, Crossett B, Holmes AJ (2010) Untangling the multiple monooxygenases of Mycobacterium chubuense strain NBB4, a versatile hydrocarbon degrader. Environ Micro Reports. doi:10.1111/j.1758-2229.2010.00225.x
Connon SA, Tovanabootr A, Dolan M, Vergin K, Giovannoni SJ, Semprini L (2005) Bacterial community composition determined by culture-independent and -dependent methods during propane-stimulated bioremediation in trichloroethene-contaminated groundwater. Environ Microbiol 7:165–178
Davis GB, Patterson BM, Johnston CD (2009) Aerobic bioremediation of 1,2 dichloroethane and vinyl chloride at field scale. J Contam Hydrol 107:91–100
Ely RL, Williamson KJ, Hyman MR, Arp DJ (1997) Cometabolism of chlorinated solvents by nitrifying bacteria: kinetics, substrate interactions, toxicity effects, and bacterial response. Biotechnol Bioeng 54:520–534
Ensign SA, Hyman MR, Arp DJ (1992) Cometabolic degradation of chlorinated alkenes by alkene monooxygenase in a propylene-grown Xanthobacter strain. Appl Environ Microbiol 58:3038–3046
Ewers J, Freier-Schröder D, Knackmuss H-J (1990) Selection of trichloroethene (TCE) degrading bacteria that resist inactivation by TCE. Arch Microbiol 154:410–413
Fathepure BZ, Elango VK, Singh H, Bruner MA (2005) Bioaugmentation potential of a vinyl chloride-assimilating Mycobacterium sp., isolated from a chloroethene-contaminated aquifer. FEMS Microbiol Lett 248:227–234
Fox BG, Borneman JG, Wackett LP, Lipscomb JD (1990) Haloalkene oxidation by the soluble methane monooxygenase from Methylosinus trichosporium OB3b: mechanistic and environmental implications. Biochemistry 29:6419–6427
Frascari D, Pinelli D, Nocentini M, Baleani E, Cappelletti M, Fedi S (2008) A kinetic study of chlorinated solvent cometabolic biodegradation by propane-grown Rhodococcus sp PB1. Biochem Eng J 42:139–147
Freedman DL, Danko AS, Verce MF (2001) Substrate interactions during aerobic biodegradation of methane, ethene, vinyl chloride and 1,2-dichloroethenes. Water Sci Technol 43:333–340
Fries MR, Forney LJ, Tiedje JM (1997) Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred. Appl Environ Microbiol 63:1523–1530
Gossett JM (1987) Measurement of Henry’s law constants for C1 and C2 chlorinated hydrocarbons. Environ Sci Technol 21:202–208
Gossett JM (2010) Sustained aerobic oxidation of vinyl chloride at low oxygen concentrations. Environ Sci Technol 44:1405–1411
Gribble GW (1998) Naturally occurring organohalogen compounds. Acc Chem Res 31:141–152
Hage JC, Hartmans S (1999) Monooxygenase-mediated 1,2-dichloroethane degradation by Pseudomonas sp Strain DCA1. Appl Environ Microbiol 65:2466–2470
Hage JC, Kiestra FD, Hartmans S (2001) Co-metabolic degradation of chlorinated hydrocarbons by Pseudomonas sp. strain DCA1. Appl Microbiol Biotechnol 57:548–554
Hartmans S, De Bont JA (1992) Aerobic vinyl chloride metabolism in Mycobacterium aurum L1. Appl Environ Microbiol 58:1220–1226
Hartmans S, Kaptein A, Tramper J, de Bont JAM (1992) Characterization of a Mycobacterium sp. and a Xanthobacter sp. for the removal of vinyl chloride and 1,2-dichloroethane from waste gases. Appl Microbiol Biotechnol 37:796–801
Jankowski J, Beck P (2000) Aquifer heterogeneity: hydrogeological and hydrochemical properties of the Botany Sands aquifer and their impact on contaminant transport. Aust J Earth Sci 47:45–64
Janssen DB, Scheper A, Dijkhuizen L, Witholt B (1985) Degradation of halogenated aliphatic compounds by Xanthobacter autotrophicus GJ10. Appl Environ Microbiol 49:673–677
Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M (2002) Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 68:2391–2396
Jitnuyanont P, Sayavedra-Soto LA, Semprini L (2001) Bioaugmentation of butane-utilizing microorganisms to promote cometabolism of 1,1,1-trichloroethane in groundwater microcosms. Biodegradation 12:11–22
Kielhorn J, Melber C, Wahnschaffe U, Aitio A, Mangelsdorf I (2000) Vinyl chloride: still a cause for concern. Environ Health Perspect 108:579–588
Kim Y, Arp DJ, Semprini L (2000) Chlorinated solvent cometabolism by butane-grown mixed culture. J Environ Eng 126:934–942
Kocamemi BA, Cecen F (2010) Cometabolic degradation and inhibition kinetics of 1,2-dichloroethane (1,2-DCA) in suspended-growth nitrifying systems. Environ Technol 31:295–305
Koziollek P, Bryniok D, Knackmuss H (1999) Ethene as an auxiliary substrate for the cooxidation of cis-dichloroethene and vinyl chloride. Arch Microbiol 172:240–246
Kruis A, May A (1962) Lösungsgleichgewichte von Gasen mit Flüssigkeiten. In: Schafer K, Lax E (eds) Landolt-Börnstein Zahlenwerte und Funktionen aus Physik, Chemie, Astronomie, Geophysik und Technik, vol 5. Springer Verlag, Berlin, pp 1–27
Louarn E, Aulenta F, Levantesi C, Majone M, Tandoi V (2006) Modeling substrate interactions during aerobic biodegradation of mixtures of vinyl chloride and ethene. J Environ Eng 132:940–948
Mattes TE, Alexander AK, Coleman NV (2010) Aerobic biodegradation of the chloroethenes: pathways, enzymes, ecology, and evolution. FEMS Microbiol Rev 34:445–475
McCall SN, Jurgens P, Ivanetich KM (1983) Hepatic microsomal metabolism of the dichloroethanes. Biochem Pharmacol 32:207–213
Melin ES, Puhakka JA, Strand SE, Rockne KJ, Ferguson JF (1996) Fluidized-bed enrichment of marine ammonia-to-nitrite oxidizers and their ability to degrade chloroaliphatics. Int Biodeter Biodeg 38:9–18
Miller TR, Franklin MP, Halden RU (2007) Bacterial community analysis of shallow groundwater undergoing sequential anaerobic and aerobic chloroethene biotransformation. FEMS Microbiol Ecol 60:299–311
Oldenhuis R, Vink RL, Janssen DB, Witholt B (1989) Degradation of chlorinated aliphatic hydrocarbons by Methylosinus trichosporium OB3b expressing soluble methane monooxygenase. Appl Environ Microbiol 55:2819–2826
Oldenhuis R, Oedzes JY, van der Waarde JJ, Janssen DB (1991) Kinetics of chlorinated hydrocarbon degradation by Methylosinus trichosporium OB3b and toxicity of trichloroethylene. Appl Environ Microbiol 57:7–14
Rui L, Kwon YM, Reardon KF, Wood TK (2004) Metabolic pathway engineering to enhance aerobic degradation of chlorinated ethenes and to reduce their toxicity by cloning a novel glutathione S-transferase, an evolved toluene o-monooxygenase, and gamma-glutamylcysteine synthetase. Environ Microbiol 6:491–500
Sander R (1999) Modeling atmospheric chemistry: interactions between gas-phase species and liquid cloud/aerosol particles. Surv Geophys 20:1–31
Semprini L, Dolan ME, Mathias MA, Hopkins GD, McCarty PL (2007) Bioaugmentation of butane-utilizing microorganisms for the in situ cometabolic treatment of 1,1-dichloroethene, 1,1-dichloroethane, and 1,1,1-trichloroethane. Eur J Soil Biol 43:322–327
Smidt H, de Vos WM (2004) Anaerobic microbial dehalogenation. Annu Rev Microbiol 58:43–73
Speitel GE, Closmann FB (1991) Chlorinated solvent biodegradation by methanotrophs in unsaturated soils. J Environ Eng 117:541–548
Squillace PJ, Moran MJ, Lapham WW, Price CV, Clawges RM, Zogorski JS (1999) Volatile organic compounds in untreated ambient groundwater of the United States, 1985–1995. Environ Sci Technol 33:4176–4187
Steffan RJ, Sperry KL, Walsh MT, Vainberg S, Condee CW (1999) Field-scale evaluation of in situ bioaugmentation for remediation of chlorinated solvents in groundwater. Environ Sci Technol 33:2771–2781
Stoida LV, Emelyanov SA (1980) Applicability of the integrated form of the Michaelis–Menten equation to kinetic-studies of transport ATPases. Bull Exp Biol Med 90:1054–1057
Stucki G, Thuer M (1995) Experiences of a large scale application of 1,2-dichloroethane degrading microorganisms for groundwater treatment. Environ Sci Technol 29:2339–2345
van den Wijngaard AJ, van der Kamp KWHJ, van der Ploeg J, Pries F, Kazemier B, Janssen DB (1992) Degradation of 1,2-dichloroethane by Ancylobacter aquaticus and other facultative methylotrophs. Appl Environ Microbiol 58:976–983
van der Ploeg J, van Hall G, Janssen DB (1991) Characterization of the haloacid dehalogenase from Xanthobacter autotrophicus GJ10 and sequencing of the dhlB gene. J Bacteriol 173:7925–7933
van Ginkel CG, de Bont JAM (1986) Isolation and characterization of alkene-utilizing Xanthobacter spp. Arch Microbiol 145:403–407
van Hylckama Vlieg JET, de Koning W, Janssen DB (1996) Transformation kinetics of chlorinated ethenes by Methylosinus trichosporium OB3b and detection of unstable epoxides by on-line gas chromatography. Appl Environ Microbiol 62:3304–3312
van Hylckama Vlieg JET, Kingma J, van den Wijngaard AJ, Janssen DB (1998) A glutathione S-transferase with activity towards cis-dichloroepoxyethane is involved in isoprene utilization by Rhodococcus sp. strain AD45. Appl Environ Microbiol 64:2800–2805
Verce MF, Freedman DL (2000) Modeling the kinetics of vinyl chloride cometabolism by an ethane-grown Pseudomonas sp. Biotechnol Bioeng 71:274–285
Verce MF, Ulrich RL, Freedman DL (2000) Characterization of an isolate that uses vinyl chloride as a growth substrate under aerobic conditions. Appl Environ Microbiol 66:3535–3542
Verce MF, Gunsch CK, Danko AS, Freedman DL (2002) Cometabolism of cis-1,2-dichloroethene by aerobic cultures grown on vinyl chloride as the primary substrate. Environ Sci Technol 36:2171–2177
Wackett LP (1995) Bacterial co-metabolism of halogenated organic compounds. In: Young LY, Cerniglia CE (eds) Microbial transformation and degradation of toxic organic chemicals. Wiley-Liss, New York, pp 217–241
Witt ME, Klecka GM, Lutz EJ, Ei TA, Grosso NR, Chapelle FH (2002) Natural attenuation of chlorinated solvents at Area 6, Dover Air Force Base: groundwater biogeochemistry. J Contam Hydrol 57:61–80
Wood TK (2008) Molecular approaches in bioremediation. Curr Opin Biotechnol 19:572–578
Yagi O, Hashimoto A, Iwasaki K, Nakajima M (1999) Aerobic degradation of 1,1,1-trichloroethane by Mycobacterium spp. isolated from soil. Appl Environ Microbiol 65:4693–4696
Zhao HP, Schmidt KR, Tiehm A (2010) Inhibition of aerobic metabolic cis-1,2-di-chloroethene biodegradation by other chloroethenes. Water Res 44:2276–2282
Acknowledgments
Nga Le was supported by the Richard Claude Mankin Postgraduate Scholarship in Water Conservation. The Coleman lab was supported by Discovery grants (DP0877315, DP0559214) from the Australian Research Council. We thank James Stening (Orica Australia), Mike Manefield (University of New South Wales), and workers from URS Australia for assistance with obtaining samples and groundwater chemistry data from the Botany site. Dick Janssen is thanked for providing the Xanthobacter dehalogenase genes. Andy Holmes and Vicky McCarl are thanked for their advice, encouragement, and assistance with co-supervision of Nga’s PhD project.
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Le, N.B., Coleman, N.V. Biodegradation of vinyl chloride, cis-dichloroethene and 1,2-dichloroethane in the alkene/alkane-oxidising Mycobacterium strain NBB4. Biodegradation 22, 1095–1108 (2011). https://doi.org/10.1007/s10532-011-9466-0
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DOI: https://doi.org/10.1007/s10532-011-9466-0