Skip to main content
Log in

Detection of Bovine Spongiform Encephalopathy-Related Prion Protein Gene Promoter Polymorphisms in Local Turkish Cattle

  • Published:
Biochemical Genetics Aims and scope Submit manuscript

Abstract

Polymorphisms in open reading frames of the prion protein gene (PRNP) have been shown to be associated with prion disease susceptibility in humans, sheep, and mice. Studies in recent years have demonstrated a similar effect of PRNP promoter and intron-1 polymorphisms on bovine spongiform encephalopathy (BSE) susceptibility in cattle. In this study, the deletion/insertion (indel) polymorphisms of the bovine PRNP gene within the promoter sequence (23 bp) and intron 1 (12 bp) were analyzed in local Turkish cattle. For this, 150 animals belonging to three different local breeds—the South Anatolian red, the East Anatolian red, and the Turkish gray—were tested using DNA purification and polymerase chain reaction. The ins allele in the 12 bp indel, which is associated with low susceptibility to BSE, showed a high frequency in all three breeds. The low-susceptibility allele of the 23-bp indel was identified in Turkish gray cattle with a frequency of 0.80. Results of the study have shown that local Turkish cattle might have an important genetic value for selection against BSE.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bakır G, Kaygısız G (2003) Güney Anadolu kırmızısı sığırlarında dünden bugüne yapılan ıslah çalışmaları. Gap 3 tarım kongresi, Şanlıurfa, Turkey

  • Bruford MW, Towsend SJ (2004) Case studies in the genetics of animal domestication: sheep. In: Zeder M, Decker-Walkers D, Bradley D, Smith BD (eds) Documenting domestication: New genetic and archaeological paradigms. California University Press

  • Bruford MW, Bradley DG, Luikart G (2003) DNA markers reveal the complexity of livestock domestication. Nat Rev Genet 4:900–910

    Article  PubMed  CAS  Google Scholar 

  • Brunelle BW, Hamir AN, Baron T, Biacabe AG, Richt JA, Kunkle RA, Cutlip RC, Miller JM, Nicholson EM (2007) Polymorphisms of the prion gene promoter region that influence classical bovine spongiform encephalopathy susceptibility are not applicable to other transmissible spongiform encephalopathies in cattle. J Anim Sci 85(12):3142–3147

    Article  PubMed  CAS  Google Scholar 

  • Czarnik U, Zabolewicz T, Strychalski J, Grzybowski G, Bogusz M, Walawski K (2007) Deletion/insertion polymorphism of the prion protein gene (PRNP) in Polish Holstein-Friesian cattle. J Appl Genet 48(1):69–71

    PubMed  Google Scholar 

  • Daszak P, Cunningham AA, Hyatt AD (2000) Emerging infectious diseases of wildlife: threats to biodiversity and human health. Science 287:443–449

    Article  PubMed  CAS  Google Scholar 

  • Ertuğrul M, Akman N, Dellal G, Goncagül T (2000) Hayvan gen kaynaklarının korunması ve Türkiye hayvan gen kaynakları. Türkiye Ziraat Mühendisliği V. Teknik Kongresi, I. Cilt, S.285–300 Yayın No:38 Ankara

  • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50

    CAS  PubMed  Google Scholar 

  • Goldmann W, Hunter N, Martin T, Dawson H, Hope J (1991) Different forms of the bovine PrP gene have five or six copies of a short G-C element within the protein-coding region. Gen Virol 72:201–204

    Article  CAS  Google Scholar 

  • Haase B, Doherr MG, Seuberlich T, Drogemuller K, Dolf G, Nicken P, Schiebel K, Ziegler U, Groschup MH, Zurbriggen A, Leeb T (2007) PRNP promoter polymorphisms are associated with BSE susceptibility in Swiss and German cattle. BMC Genet 16:8–15

    Google Scholar 

  • Heaton MP, Leymaster KA, Freking BA, Hawk DA, Smith TP, Keele JW, Snelling WM, Fox JM, Chitko-McKown CG, Laegreid WW (2003) Prion gene sequence variation within diverse groups of U.S. sheep, beef cattle, and deer. Mamm Genome 14:765–777

    Article  PubMed  CAS  Google Scholar 

  • Hopp P, Ulvund MJ, Jarp J (2001) A case-control study on scrapie in Norwegian sheep flocks. Prev Vet Med 51:183–198

    Article  PubMed  CAS  Google Scholar 

  • Hunter N, Foster JD, Goldmann W, Stear MJ, Hope J, Bostock C (1996) Natural scrapie in a closed flock of Cheviot sheep occurs only in specific PrP genotypes. Arch Virol 141:809–824

    Article  PubMed  CAS  Google Scholar 

  • Jeong BH, Lee YJ, Kim NH, Carp RI, Kim YS (2006) Genotype distribution of the prion protein gene (PRNP) promoter polymorhisms in Korean cattle. Genome 49:1539–1544

    Article  PubMed  CAS  Google Scholar 

  • Juling K, Schwarzenbacher H, Williams JL, Fries R (2006) A major genetic component of BSE susceptibility. BMC Biol 4:33

    Article  PubMed  CAS  Google Scholar 

  • Kahraman MM, Ozyigit MO, Akkoc A, Ediz B, Mısırlıoğlu D, Sonmez G, Alasonyalılar A, Yılmaz R (2007) Targeted surveillance to assess the presence of BSE in the age risk population of cattle slaughtered in Bursa, Turkey: preliminary results of an immunohistochemical detection study for the 2004–2005 period. J Vet Sci 8(2):193–195

    Article  PubMed  Google Scholar 

  • Kashkevich K, Humeny A, Ziegler U, Groschup MH, Nicken P, Leeb T, Fischer C, Becker CM, Schiebel K (2007) Functional relevance of DNA polymorphisms within the promoter region of the prion protein gene and their association to BSE infection. FASEB J 21:1547–1555

    Article  PubMed  CAS  Google Scholar 

  • Kaymakçı M, Koçak C (2004) Hayvan Turleri ve Irklari. Tarimsal Uygulamalar Hayvansal Uretim Uygulamalari. Ege Univ. Ziraat Fak, Izmir

  • Kerber AR, Hepp D, Passos DT, Weimer TA (2007) Polymorphisms of two indels at the PRNP gene in three beef cattle herds. Biochem Genet. doi:10.1007/s10528-007-9113-y

  • Loftus RT, Ertugrul O, Harba AH, El-Barody MAA, Machugh DE, Park SDE, Bradley DG (1999) A microsatellite survey of cattle from a centre of origin: the Near East. Mol Ecol 8:2015–2022

    Article  PubMed  CAS  Google Scholar 

  • McCallum H, Dobson A (1995) Detecting disease and parasite threats to endangered species and ecosystems. Trends Ecol Evol 10:190–194

    Article  Google Scholar 

  • Mead S, Stumpf MP, Whitfield J, Beck JA, Poulter M, Campbell T, Uphill JB, Goldstein D, Alpers M, Fisher EM, Collinge J (2003) Balancing selection at the prion protein gene consistent with prehistoric kuru like epidemics. Science 300:640–643

    Article  PubMed  CAS  Google Scholar 

  • Miller M, Dykes DD, Polesky HF (1998) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16:1215

    Article  Google Scholar 

  • Nakamitsu S, Miyazava T, Horuichi M, Onoe S, Ohoba Y, Kitagawa H, Ishiguro N (2006) Sequence variation of bovine prion protein gene in Japanese cattle (Holstein and Japanese Black). J Vet Med Sci 68(1):27–33

    Article  PubMed  CAS  Google Scholar 

  • Neibergs HL, Ryan AM, Womack JE, Spooner RL, Williams JL (1994) Polymorphism analysis of the prion gene in BSE-affected and unaffected cattle. Anim Genet 25:313–317

    PubMed  CAS  Google Scholar 

  • Peden AH, Head MW, Ritchie DL, Bell JE, Ironside JW (2004) Preclinical vCJD after blood transfusion in a PRNP codon 129 heterozygous patient. Lancet 364:527–529

    Article  PubMed  Google Scholar 

  • Prusiner SB (1998) Prions. Proc Natl Acad Sci USA 95:13363–13383

    Article  PubMed  CAS  Google Scholar 

  • Sander P, Hamann H, Pfeifer I, Wemheuer W, Breng B, Groschup MH, Ziegler U, Distl O, Leeb T (2004) Analysis of sequence variability of the bovine prion protein gene (PRNP) in German cattle breeds. Neurogenetics 5:19–25

    Article  PubMed  CAS  Google Scholar 

  • Sander P, Hamann H, Drögemüller C, Kashkevich K, Schiebel K, Leeb T (2005) Bovine prion protein gene (PRNP) promoter polymorphisms modulate PRNP expression and may be responsible for differences in bovine spongiform encephalopathy susceptibility. J Biol Chem 280:37408–37414

    Article  PubMed  CAS  Google Scholar 

  • Seabury CM, Womack JE, Pedrahita J, Derr JN (2004) Comparative PRNP genotyping of U.S. cattle sires for potential association with BSE. Mamm Genome 15(10):828–833

    Article  PubMed  CAS  Google Scholar 

  • Tongue SC, Wilesmith JW, Cook CJ (2004) Frequencies of prion protein (PrP) genotypes and distribution of ages in 15 scrapie-affected flocks in Great Britain. Vet Rec 154:9–16

    PubMed  CAS  Google Scholar 

  • Tranulis MA (2002) Influence of the prion protein gene, PrnP, on scrapie susceptibility in sheep. APMIS 110:33–42

    Article  PubMed  CAS  Google Scholar 

  • Troy CS, MacHugh DE, Balley JF, Magee DA, Loftus TR, Cunningham P, Chamberlain AT, Sykes BC, Bradley DG (2001) Genetic evidence for Near-Eastern origins of European cattle. Nature 410:1088–1091

    Article  PubMed  CAS  Google Scholar 

  • Vaccari G, Petraroli R, Agrimi U, Eleni C, Perfetti MG, Di Bari MA, Morelli L, Ligios C, Busani L, Nonno R, Di Guardo G (2001) PrP genotype in Sarda breed sheep and its relevance to scrapie. Arch Virol 146:2029–2037

    Article  PubMed  CAS  Google Scholar 

  • Walawski K, Czarnik U (2003) Prion protein octapeptide-repeat polymorphism in Polish Black and White cattle. J Appl Genet 44:191–195

    PubMed  Google Scholar 

  • Yeh F, Yang RC, Boyle T (2000) Popgene (v. 1.32), Microsoft Windows-based freeware for population genetic analysis. Retrieved from http://www.ualberta.ca/~fyeh/Pop32.exe

Download references

Acknowledgments

This work was supported by the Research Fund of the University of Istanbul, Project No. UDP-1971/18012008. The authors would like to thank the Turkish Scientific Council (TUBİTAK) and the German Scientific Council (DFG), which supported the stay of Dr. Cemal Ün for three months at the University of Bonn, Institute of Animal Sciences.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cemal Ün.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ün, C., Oztabak, K., Özdemir, N. et al. Detection of Bovine Spongiform Encephalopathy-Related Prion Protein Gene Promoter Polymorphisms in Local Turkish Cattle. Biochem Genet 46, 820–827 (2008). https://doi.org/10.1007/s10528-008-9196-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10528-008-9196-0

Keywords

Navigation