Skip to main content

Advertisement

Log in

A population genetic study in a scattered forest species, wild service tree [Sorbus torminalis (L.) Crantz], using RAPD markers

  • Original Paper
  • Published:
European Journal of Forest Research Aims and scope Submit manuscript

Abstract

Wild service tree [Sorbus torminalis (L.) Crantz] is a forest tree widespread in Europe, characterized by a scattered distribution. Its hermaphroditic flowers are pollinated by insects, and outcrossing is the prominent mating system, also due to the presence of gametophytic self-incompatibility. Genetic diversity and differentiation of 22 populations from northwestern Italy were investigated by means of variation scored at 53 polymorphic RAPD (Random Amplified Polymorphic DNA) loci. Populations differed in genetic variation, with Shannon diversity index ranging from 0.166 to 0.469. According to Analysis of Molecular Variance (AMOVA), most of the genetic variation was found within populations (61.78%) with a significant proportion of variance attributable to genetic differences between regions (23.60%) and between populations (14.62%). Evidence for isolation by distance was found in the set of populations sampled. The effect of habitat fragmentation on genetic variation was also evaluated. The efficacy of RAPD markers in analysing genetic variation, and the contribution of the results in terms of the preservation of biodiversity are discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Angelone S, Hilfiker K, Holderegger R, Hoebee SE (2004) A hierarchical approach investigating how scale affects genetic connectivity of populations in scattered temperate forest tree Sorbus torminalis. Poster no. 26-01. SCB Annual Meeting, Columbia University

  • Bartish IV, Jeppson N, Nybom H (1999) Population genetic structure in the dioecious pioneer plant species Hippophae rhamnoides investigated by random amplified polymorphic DNA (RAPD) markers. Mol Ecol 8:791–802

    Article  CAS  Google Scholar 

  • Bednorz L, Myczko Ł, Kosiński P (2004) Isozyme polymorphism and genetic structure of the population of Sorbus torminalis (L.) Crantz from the Bytyń Forest (Poland). J Appl Genet 45:321–324

    PubMed  Google Scholar 

  • Bekessy SA, Ennos RA, Burgman MA, Newton AC, Ades PK (2003) Neutral DNA markers fail to detect genetic divergence in an ecologically important trait. Biol Cons 110:267–275

    Article  Google Scholar 

  • Boshier D, Amaral W (2004) Threats to forest ecosystems and challenges for the conservation and sustainable use of forest genetic resources. In: Vinceti B, Amaral W, Meilleur B (eds) Challenges in managing forest genetic resources for livelihoods. IPGRI, Rome, pp 7–22

    Google Scholar 

  • Bussel JD (1999) The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae). Mol Ecol 8:775–789

    Article  Google Scholar 

  • Cheng Z, Lu BR, Baldwin BS, Sameshima K, Chen JK (2002) Comparative studies of genetic diversity in kenaf (Hibiscus cannabinus L.) varieties based on analysis of agronomic and RAPD data. Hereditas 136:231–239

    Article  PubMed  Google Scholar 

  • Demesure-Musch B, Oddou-Muratorio S (2004) EUFORGEN Technical Guidelines for genetic conservation and use of wild service tree (Sorbus torminalis). International Plant Genetic Resources Institute, Rome

    Google Scholar 

  • Demesure B, Le Guerroué B, Lucchi G, Prat D, Petit RJ (2000) Genetic variability of a scattered temperate forest tree: Sorbus torminalis L. (Crantz). Ann For Sci 57:63–71

    Article  Google Scholar 

  • Diaz O, Sun GL, Salomon B, von Bothmer R (1999) Levels and distribution of allozyme and RAPD variation in populations of Elymus fibrosus (Schrenk) Tzvel. (Poaceae). Genet Resour Crop Evol 47:11–24

    Article  Google Scholar 

  • Drapier N (1993) Écologie de l’alisier torminal, Sorbus torminalis (L.) Crantz. Rev For Fr 3:229–243

    Article  Google Scholar 

  • Ennos RA, Cowie NR, Legg CJ, Sydes C (1997) Which measures of genetic variation are relevant in plant conservation? A case study of Primula scotica. In: Tew TE, Crawford TJ, Spencer JW, Stevens DP, Usher MB, Warren J (eds) The role of genetics in conserving small populations. JNCC, Peterborough, pp 73–79

    Google Scholar 

  • Etisham-Ul-Haq M, Allnutt TR, Smith-Ramiâ Rez C, Gardner MF, Armesto JJ, Newton AC (2001) Patterns of genetic variation in in situ and ex situ populations of the threatened Chilean Vine, Berberidopsis corallina, detected using RAPD markers. Ann Bot 87:813–821

    Article  CAS  Google Scholar 

  • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491

    PubMed  CAS  Google Scholar 

  • Frankel OH, Brown AHD, Burdon JJ (1995) The conservation of plant biodiversity. Cambridge University Press, Cambridge

    Google Scholar 

  • Gibson PJ, Wheelwright NT (1995) Genetic structure in populations of a tropical tree Ocotea tenera (Lauraceae): influence of avian seed dispersal. Oecologia 103:49–54

    Article  Google Scholar 

  • Giles BE, Goudet J (1997) Genetic differentiation in Silene dioica metapopulations: estimation of spatiotemporal effects in a successional plant species. Am Nat 149:507–526

    Article  Google Scholar 

  • Grashof-Bokdam CJ, Jansen J, Smulders MJM (1998) Dispersal patterns of Lonicera periclymenum determined by genetic analysis. Mol Ecol 7:165–174

    Article  Google Scholar 

  • Griffin AR, Sedgley M (1989) Sexual reproduction of tree crops. Academic, London

    Google Scholar 

  • Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. New Forest 5:95–124

    Article  Google Scholar 

  • Hanski I, Gilpin ME (1997) Metapopulation dynamics: empirical and theoretical investigations. Academic, San Diego

    Google Scholar 

  • Hardy OJ (2003) Estimation of pairwise relatedness between individuals and characterization of isolation-by-distance processes using dominant genetic markers. Mol Ecol 12:1577–1588

    Article  PubMed  Google Scholar 

  • Heywood VH, Iriondo JM (2003) Plant conservation, old problems, new perspectives. Biol Conserv 113:321–335

    Article  Google Scholar 

  • Hilfiker K, Gugerli F, Schütz JP, Rotach P, Holderegger R (2004a) Low RAPD variation and female-biased sex ratio indicate genetic drift in small populations of the dioecious conifer Taxus baccata in Switzerland. Conserv Genet 5:357–365

    Article  CAS  Google Scholar 

  • Hilfiker K, Holderegger R, Rotach P, Gugerli F (2004b) Dynamics of genetic variation in Taxus baccata: local versus regional perspectives. Can J Bot 82:219–227

    Article  Google Scholar 

  • Hoebee SE, Menn C, Rotach P, Finkeldey R, Holderegger R (2006) Spatial genetic structure of Sorbus torminalis: the extent of clonal reproduction in natural stands of a rare tree species with a scattered distribution. For Ecol Manage 226:1–8

    Article  Google Scholar 

  • Howe GT, Aitken SN, Neale DB, Jermstad KD, Wheeler NC, Chen THH (2003) From genotype to phenotype: unraveling the complexities of cold adaptation in forest trees. Can J Bot 81:1247–1266

    Article  CAS  Google Scholar 

  • Ingvarsson PK, Olsson K, Ericson L (1997) Extinction-recolonization dynamics in the mycophagous beetle Phalacrus substriatus. Evolution 51:187–195

    Article  Google Scholar 

  • Jordano P, Godoy JA (2000) RAPD variation and population genetic structure in Prunus mahaleb (Rosaceae), an animal-dispersed tree. Mol Ecol 9:1293–1305

    Article  PubMed  CAS  Google Scholar 

  • Kremer A, Durel CE, Petit R, Villar M (1994) Marqueurs moléculaires et génétique des arbres forestiers. Biofutur 131:17–23

    Google Scholar 

  • Lewontin RC (1972) The apportionment of human diversity. Evol Biol 6:381–398

    Google Scholar 

  • Liu Z, Furnier GR (1993) Comparison of allozyme, RFLP, and RAPD markers for revealing genetic variation within and between trembling aspen and bigtooth aspen. Theor Appl Genet 87:97–105

    CAS  Google Scholar 

  • Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Mol Ecol 3:91–99

    PubMed  CAS  Google Scholar 

  • Machon N, Lefranc M, Bilger I, Mazer SJ, Saar A (1997) Allozyme variation in Ulmus species from France: analysis of differentiation. Heredity 78:12–20

    Article  PubMed  CAS  Google Scholar 

  • Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220

    PubMed  CAS  Google Scholar 

  • Mattila A, Vakkari P (1997) Genetic variation of Quercus robur and Ulmus laevis in Finland. In: Kurm M, Tamm U (eds) Proc. Nordic Group of forest genetics and tree breed. meet., Estonia, 3–7 June 1996. Forestry studies, vol XXVIII, pp 63–68

  • Miller MP (1997) Tools for population genetic analysis (TFPGA), version 3. Department of Biological Sciences, Northern Arizona University, Arizona

    Google Scholar 

  • Nelson-Jones EB, Briggs D, Smith AG (2002) The origin of intermediate species of the genus Sorbus. Theor Appl Genet 105:953–963

    Article  PubMed  CAS  Google Scholar 

  • Nybom H, Bartish IV (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect Plant Ecol Evol Syst 3:93–114

    Article  Google Scholar 

  • Oddou-Muratorio S, Aligon C, Decroocq S, Plomion C, Lamant T, Musch-Demesure B (2001a) Microsatellite primers for Sorbus torminalis and related species. Mol Ecol Notes 1:297–299

    Article  CAS  Google Scholar 

  • Oddou-Muratorio S, Petit RJ, Le Guerroue B, Guesnet D, Demesure B (2001b) Pollen versus seed-mediated gene flow in a scattered woody species, Sorbus torminalis L. (Crantz). Evolution 55:1123–1135

    PubMed  CAS  Google Scholar 

  • Oddou-Muratorio S, Houot ML, Demesure-Musch B, Austerlitz F (2003) Pollen flow in the wildservice tree, Sorbus torminalis (L.) Crantz. I. Evaluating the paternity analysis procedure in continuous populations. Mol Ecol 12:3427–3439

    Article  PubMed  CAS  Google Scholar 

  • Oddou-Muratorio S, Demesure-Musch B, Pélissier R, Gouyon PH (2004) Impacts of gene flow and logging history on the local genetic structure of a scattered tree species, Sorbus torminalis L. Crantz. Mol Ecol 13:3689–3702

    Article  PubMed  Google Scholar 

  • Oddou-Muratorio S, Klein EK, Austerlitz F (2005) Pollen flow in the wildservice tree, Sorbus torminalis (L.) Crantz. II. Pollen dispersal and heterogeneity in mating success inferred from parent-offspring analysis. Mol Ecol 14:4441–4452

    Article  PubMed  CAS  Google Scholar 

  • Prat D, Leger C, Bojovic S (1992) Genetic diversity among Alnus glutinosa (L.) Gaertn. Populations. Acta Oecol 13:469–477

    Google Scholar 

  • Rajora P, Rahman H (2003) Microsatellite DNA and RAPD fingerprinting, identification and genetic relationships of hybrid poplar (Populus x canadensis) cultivars. Theor Appl Genet 106:470–477

    PubMed  CAS  Google Scholar 

  • Rasmussen K, Kollmann J (2004) Poor sexual reproduction on the distribution limit of the rare tree Sorbus torminalis. Acta Oecol 25:211–218

    Article  Google Scholar 

  • Reed DH, Frankham R (2001) How closely correlated are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution 55:1095–1103

    PubMed  CAS  Google Scholar 

  • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225

    Article  Google Scholar 

  • Rohlf FJ (2001) NTSYS-pc numeral taxonomy and multivariate analysis system, version 2.10j. Exeter Publications, New York

    Google Scholar 

  • Roman B, Alfaro C, Torres AM, Moreno MT, Satovic Z, Pujadas A, Rubiales D (2003) Genetic relationships among Orobanche species as revealed by RAPD analysis. Ann Bot 91:637–642

    Article  PubMed  CAS  Google Scholar 

  • Schneider S, Roessli D Excoffier L (2000) Arlequin ver. 2.000: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland

    Google Scholar 

  • Shashidhara G, Hema MV, Koshy B, Farooqi AA (2003) Assessment of genetic diversity and identification of core collection in sandalwood germplasm using RAPDs. J Hortic Sci Biotech 78:528–536

    CAS  Google Scholar 

  • Sneath PHA, Sokal RR (1973) Numerical taxonomy: the principles and practice of numerical classification. Freeman, WH and Co., San Francisco

    Google Scholar 

  • SPSS (2003) SPSS Base 12.0 for Windows User’s Guide. SPSS Inc., Chicago

    Google Scholar 

  • Stewart CN, Rosson G, Shirley BW, Porter DM (1996) Population genetic variation in rare and endagered Iliamna (Malvaceae) in Virginia. Biol J Linn Soc 58:357–369

    Article  Google Scholar 

  • Szmidt AE, Wang XR, Lu MZ (1996) Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L.) using haploid tissue analysis. Heredity 76:412–420

    CAS  Google Scholar 

  • Taylor AD (1990) Metapopulation, dispersal, and predator-prey dynamics: an overview. Ecology 71:429–433

    Article  Google Scholar 

  • Tessier du Cros E, Màtyàs C, Kriebel H (1999) Contribution of genetics to the sustained management of global forest resources—conclusions and recommendations. In: Màtyàs C (ed) Forest genetics and sustainability, forestry sciences, vol. 63. Kluwer, Dordrecht, pp 281–287

    Google Scholar 

  • Triest L, De Greef B, De Bondt R, Van Lycken J (2000) RAPD of controlled crosses and clones from the field suggests that hybrids are rare in the Salix albaSalix fragilis complex. Heredity 84:555–563

    Article  PubMed  Google Scholar 

  • Van Tienderen PH, De Haan AA, Van der Linden CG, Vosman B (2002) Biodiversity assessment using markers for ecologically important traits. Trends Ecol Evol 12:577–582

    Article  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of populations structure. Evolution 38:1358–1370

    Article  Google Scholar 

  • Wright S (1951) The genetical structure of populations. Ann Eugen 15:323–354

    Google Scholar 

  • Wu J, Krutovskii KV, Strauss SH (1999) Nuclear DNA diversity, population differentiation and phylogenetic relationships in the California closed-cone pines based on RAPD and allozyme markers. Genome 42:893–908

    Article  CAS  Google Scholar 

  • Yeh FC, Yang R (2000) POPGENE Version 1.32. Dept. of Renewable Resources, Univ. of Alberta. http://www.ualberta.ca/~fyeh

Download references

Acknowledgments

The research was supported by grants from Regione Piemonte (Direzione Economia Montana e Foreste, Settore Gestione Proprietà Forestali Regionali e Vivaistiche) and Ente Regionale per i Servizi all’Agricoltura e alle Foreste of Regione Lombardia. We are also grateful to Cooperativa Il Frassino for assistance in selecting the populations from Liguria to be included in the study, and for collecting the samples.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to P. Belletti.

Additional information

Communicated by Rainer Matyssek.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Belletti, P., Monteleone, I. & Ferrazzini, D. A population genetic study in a scattered forest species, wild service tree [Sorbus torminalis (L.) Crantz], using RAPD markers. Eur J Forest Res 127, 103–114 (2008). https://doi.org/10.1007/s10342-007-0187-1

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10342-007-0187-1

Keywords

Navigation