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First natural co-occurrence of tomato leaf curl New Delhi virus DNA-A and chili leaf curl betasatellite on tomato plants (Solanum lycopersicum L.) in India

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Abstract

Tomato leaf curl disease (ToLCD) affected 25% of the tomato crop in Chitrakoot, India and symptomatic leaves were collected for molecular assay. The complete sequences of bipartite begomovirus DNA-A and a betasatellite DNA were amplified. In a sequence analysis, begomovirus DNA-A and betasatellite shared highest sequence identity (91–99%) with Tomato leaf curl New Delhi virus (ToLCNDV) DNA-A and chili leaf curl betasatellite (ChLCB), respectively. The virus was transmitted by whitefly to tomato plants and caused ToLCD symptoms with 70% transmission rate. To our knowledge, this is the first report of the natural occurrence of ToLCNDV and ChLCB in India.

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References

  • Akhter A, Akhtar S, Saeed M, Mansoor S (2014) Chili leaf curl betasatellite enhances symptoms induced by tomato leaf curl New Delhi virus, a bipartite begomovirus. Int J Agric Biol 16:1225–1228

    Google Scholar 

  • Anwar S (2017) Distinct association of an alphasatellite and a betasatellite with Tomato leaf curl New Delhi virus in field-infected cucurbit. J Gen Plant Pathol 83:185–188

    Article  CAS  Google Scholar 

  • Briddon RW, Stanley J (2006) Subviral agents associated with plant single-stranded DNA viruses. Virology 344:198 – 210

    Article  CAS  Google Scholar 

  • Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA β: a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20:315–318

    Article  CAS  Google Scholar 

  • Bull SE, Briddon RW, Markham PG (2003) Universal primers for the PCR-mediated amplification of DNA 1: a satellite-like molecule associated with begomovirus-DNA β complexes. Mol Biotechnol 23:83–86

    Article  CAS  Google Scholar 

  • Chakraborty S, Pandey PK, Banerjee MK, Kalloo G, Fauquet CM (2003) A new begomovirus species causing tomato leaf curl disease in Varanasi, India. Plant Dis 87:313

    Article  Google Scholar 

  • Deng D, McGrath PF, Robinson DJ, Harrison BD (1994) Detection and differentiation of whitefly-transmitted geminiviruses in plants and vector insects by the polymerase chain reaction with degenerate primers. Ann Appl Biol 125:327–336

    Article  CAS  Google Scholar 

  • Hanley-Bowdoin L, Bejarano ER, Robertson D, Mansoor S (2013) Geminiviruses: masters at redirecting and reprogramming plant processes. Nat Rev Microbiol 11:777–788

    Article  CAS  Google Scholar 

  • Khan AJ, Akhtar S, Al-Zaidi AM, Singh AK, Briddon RW (2013) Genetic diversity and distribution of a distinct strain of Chili leaf curl virus and associated betasatellite infecting tomato and pepper in Oman. Virus Res 177:87–97

    Article  CAS  Google Scholar 

  • Kumar Y, Hallan V, Zaidi AA (2008) Molecular characterization of a distinct bipartite begomovirus species infecting tomato in India. Virus Genes 37:425–431

    Article  CAS  Google Scholar 

  • Moriones E, Praveen S, Chakraborty S (2017) Tomato leaf curl New Delhi virus: an emerging virus complex threatening vegetable and fiber crops. Viruses 9:264

    Article  Google Scholar 

  • Padidam M, Beachy RN, Fauquet CM (1995) Classification and identification of geminiviruses using sequence comparisons. J Gen Virol 76:249–263

    Article  CAS  Google Scholar 

  • Reddy RVC, Colvin J, Muniyappa V, Seal S (2005) Diversity and distribution of begomoviruses infecting tomato in India. Arch Virol 150:845–867

    Article  CAS  Google Scholar 

  • Saeed M, Zafar Y, Randles JW, Rezaian MA (2007) A monopartite begomovirus-associated DNA β satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. Arch Virol 88:2881–2889

    CAS  Google Scholar 

  • Sivalingam PN, Varma A (2012) Role of betasatellite in the pathogenesis of a bipartite begomovirus affecting tomato in India. Arch Virol 157:1081–1092

    Article  CAS  Google Scholar 

  • Snehi SK, Parihar SS, Gupta G, Singh V, Purvia AS (2016) Molecular detection and identification of begomovirus isolate on tomato from Central Region of India. J Plant Pathol Microbiol 7:389

    Article  Google Scholar 

  • Srivastava A, Kumar S, Raj SK (2015) Molecular characterization of a begomovirus and betasatellite causing yellow vein net disease of Ageratum houstonianum. Plant Dis 99:627–631

    Article  CAS  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  CAS  Google Scholar 

  • Zhou X (2013) Advances in understanding begomovirus satellites. Annu Rev Phytopathol 51:357–381

    Article  CAS  Google Scholar 

Download references

Acknowledgements

The authors thank the university research laboratory and Prof. N. C. Gautam, Vice-Chancellor, Mahatma Gandhi Chitrakoot Gramoday Vishwavidyalaya (MGCGV), Chitrakoot, Satna, Madhya Pradesh, India for providing instrumentation, basic facilities and constant encouragement.

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Correspondence to Aniruddha Kumar Agnihotri.

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10327_2018_807_MOESM1_ESM.docx

Supplementary Materials Table S1: Primer details used in this study to detect the associated virus and satellites molecule (DOCX 76 KB)

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Agnihotri, A.K., Mishra, S.P., Tripathi, R.C. et al. First natural co-occurrence of tomato leaf curl New Delhi virus DNA-A and chili leaf curl betasatellite on tomato plants (Solanum lycopersicum L.) in India. J Gen Plant Pathol 84, 414–417 (2018). https://doi.org/10.1007/s10327-018-0807-2

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