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Genotypic characterization of hypervirulent Klebsiella pneumoniae (hvKp) in a tertiary care Indian hospital

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Abstract

Hypervirulent Klebsiella pneumoniae (hvKp) is an emerging pathogen and causes endophthalmitis, liver abscess, osteomyelitis, meningitis, and necrotizing soft tissue infections in both immunodeficient and healthy people. The acquisition of the antibiotic resistance genes of hvKp has become an emerging concern throughout the globe. In this study, a total of 74 K. pneumoniae isolates were collected and identified by VITEK2 and blaSHV gene amplification. Out of these, 18.91% (14/74) isolates were identified as hvKp by both phenotypic string test and genotypic iucA PCR amplification. The antibiotic susceptibility revealed that 57.14% (8/14) isolates were multidrug-resistant (MDR) and 35.71% (5/14) isolates were extremely drug-resistant (XDR). All the isolates were resistant to β-lactam, β-lactamase + inhibitor groups of antibiotics, and the least resistance to colistin. Of 14 hvKp isolates, all isolates are positive for iroB (100%), followed by iutA (92.85%), peg344 (85.71%), rmpA (57.14%), and magA (21.42%) genes. Among serotypes, K1 was the most prevalent serotype 21.4% (3/14), followed by K5 14.3% (2/14). The most common carbapenemase gene was blaOXA-48 (78.57%) followed by blaNDM (14.28%) and blaKPC (14.28%) which co-carried multiple resistance genes such as blaSHV (100%), blaCTX-M (92.85%), and blaTEM (78.57%). About 92.85% (13/14) of hvKp isolates were strong biofilm producers, while one isolate (hvKp 10) was the only moderate biofilm producer. The (GTG)5-PCR molecular typing method revealed high diversity among the hvKp isolates in the tertiary care hospital. Our findings suggest that MDR-hvKp is an emerging pathogen and a challenge for clinical practice. In order to avoid hvKp strain outbreaks in hospital settings, robust infection control and effective surveillance should be implemented.

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All data generated or analyzed during this study are included in its supplementary information files.

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Acknowledgements

The authors are grateful to Prof. (Dr.) Sanghamitra Mishra, Dean, Institute of Medical Sciences and SUM Hospital, and Prof (Dr.) M.R. Nayak, President, Siksha ‘O’ Anusandhan University, for providing infrastructure and encouragement.

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BB wrote the manuscript. BB, PPS, and BR performed all the laboratory experiments. RP and RKS conceptualized the research. All authors have reviewed and approved the final version of the manuscript.

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Correspondence to Rajashree Panigrahy or Rajesh Kumar Sahoo.

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The current study does not include any experiments involving human or animal participants conducted by any of the authors.

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Behera, B., Swain, P.P., Rout, B. et al. Genotypic characterization of hypervirulent Klebsiella pneumoniae (hvKp) in a tertiary care Indian hospital. Int Microbiol (2024). https://doi.org/10.1007/s10123-024-00480-3

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  • DOI: https://doi.org/10.1007/s10123-024-00480-3

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