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Trends in σ-hole strengths and interactions of F3MX molecules (M = C, Si, Ge and X = F, Cl, Br, I)

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Abstract

It is well-established that many covalently-bonded atoms of Groups IV–VII have directionally-specific regions of positive electrostatic potential (σ-holes) through which they can interact with negative sites. In the case of Group VII, this is called “halogen bonding.” We have studied two series of molecules: the F3MX and, for comparison, the H3MX (M = C, Si and Ge; X = F, Cl, Br and I). Our objective was to determine how the interplay between M and X in each molecule affects the σ-holes of both, and consequently their interactions with the nitrogen lone pair of HCN. We find that the relative electronegativities of M and X are not sufficient to explain their effects upon each other’s σ-holes; consideration of charge capacity/polarizability (and perhaps other factors) also appears to be necessary. However the results do support the description of normal σ-hole interactions as being largely electrostatically-driven.

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References

  1. Clark T, Hennemann M, Murray JS, Politzer P (2007) J Mol Model 13:291–296

    Article  CAS  Google Scholar 

  2. Brinck T, Murray JS, Politzer P (1992) Int J Quantum Chem Quantum Biol Symp 44(Suppl 19):57–64

    Article  Google Scholar 

  3. Murray JS, Paulsen K, Politzer P (1994) Proc Indian Acad Sci (Chem Sci) 106:267–275

    CAS  Google Scholar 

  4. Auffinger P, Hays FA, Westhof E, Shing Ho P (2004) Proc Natl Acad Sci 101:16789–16794

    Article  CAS  Google Scholar 

  5. Metrangolo P, Neukirch H, Pilati T, Resnati G (2005) Acc Chem Res 38:386–395

    Article  CAS  Google Scholar 

  6. Politzer P, Lane P, Concha MC, Ma Y, Murray JS (2007) J Mol Model 13:305–311

    Article  CAS  Google Scholar 

  7. Politzer P, Murray JS, Clark T (2010) Phys Chem Chem Phys 12:7748–7757

    Article  CAS  Google Scholar 

  8. Stevens E (1979) Mol Phys 37:27–45

    Article  CAS  Google Scholar 

  9. Nyberg SC, Wong-Ng W (1979) Proc R Soc London A 367:29–45

    Article  Google Scholar 

  10. Ikuta S (1990) J Mol Struct (THEOCHEM) 205:191–201

    Article  Google Scholar 

  11. Pedireddi VR, Reddy DS, Goud BS, Craig DC, Rae AD, Desiraju GR (1994) J Chem Soc Perkin Trans 2:2353–2360

    Google Scholar 

  12. Price SL, Stone AJ, Lucas J, Rowland RS, Thornley AD (1994) J Am Chem Soc 16:4910–4918

    Article  Google Scholar 

  13. Tsirelson VG, Zou PF, Tang T-F, Bader RWF (1995) Acta Crystallogr A51:143–153

    CAS  Google Scholar 

  14. Murray JS, Lane P, Clark T, Politzer P (2007) J Mol Model 13:1033–1038

    Article  CAS  Google Scholar 

  15. Murray JS, Lane P, Politzer P (2008) Int J Quantum Chem 108:2770–2781

    Article  CAS  Google Scholar 

  16. Politzer P, Murray JS, Concha MC (2008) J Mol Model 14:659–665

    Article  CAS  Google Scholar 

  17. Clark T, Murray JS, Lane P, Politzer P (2008) J Mol Model 14:689–697

    Article  CAS  Google Scholar 

  18. Murray JS, Lane P, Politzer P (2007) Int J Quantum Chem 107:2286–2292

    Article  CAS  Google Scholar 

  19. Murray JS, Lane P, Politzer P (2009) J Mol Model 15:723–729

    Article  CAS  Google Scholar 

  20. Politzer P, Murray JS, Lane P, Concha MC (2009) Int J Quantum Chem 109:3773–3780

    Article  CAS  Google Scholar 

  21. Murray JS, Concha MC, Politzer P (2011) J Mol Model 17:2151–2157

    Article  CAS  Google Scholar 

  22. Miller DB, Sisler HH (1955) J Am Chem Soc 77:4998–5000

    Article  CAS  Google Scholar 

  23. Kapecki JA, Baldwin JE (1969) J Am Chem Soc 91:1120–1123

    Article  CAS  Google Scholar 

  24. Rosenfield RE Jr, Parthasarathy R, Dunitz JD (1977) J Am Chem Soc 99:4890–4862

    Google Scholar 

  25. Guru Row TN, Parthasarthy R (1981) J Am Chem Soc 103:477–479

    Article  Google Scholar 

  26. Goldstein BM, Takusagawa F, Berman HM, Srivastava PC, Robins RK (1983) J Am Chem Soc 105:7416–7422

    Article  CAS  Google Scholar 

  27. Burling FT, Goldstein BM (1992) J Am Chem Soc 114:2313–2320

    Article  CAS  Google Scholar 

  28. Iwaoka M, Tomoda S (1996) J Am Chem Soc 118:8077–8084

    Article  CAS  Google Scholar 

  29. Mitzel NW, Blake AJ, Rankin DWH (1997) J Am Chem Soc 119:4143–4148

    Article  CAS  Google Scholar 

  30. Glusker JP (1998) Top Curr Chem 198:1–56

    Article  CAS  Google Scholar 

  31. Losehand U, Mitzel NW, Rankin DWH (1999) J Chem Soc Dalton Trans 4291–4297

  32. Cozzolino AF, Vargas-Baca I, Mansour S, Mahmoudkhani AH (2005) J Am Chem Soc 127:3184–3190

    Article  CAS  Google Scholar 

  33. Murray JS, Riley KE, Politzer P, Clark T (2010) Aust J Chem 63:1598–1607

    Article  CAS  Google Scholar 

  34. Politzer P, Murray JS, Lane P (2009) Int J Quantum Chem 107:3046–3052

    Article  Google Scholar 

  35. Riley KE, Murray JS, Politzer P, Concha MC, Hobza P (2009) J Chem Theor Comput 5:155–163

    Article  CAS  Google Scholar 

  36. Corradi E, Meille SV, Messina MT, Metrangolo P, Resnati G (2000) Angew Chem Int Ed 39:1782–1786

    Article  CAS  Google Scholar 

  37. Shields ZP, Murray JS, Politzer P (2010) Int J Quantum Chem 110:2823–2832

    Article  CAS  Google Scholar 

  38. Donald KJ, Wittmack BK, Crigger C (2010) J Phys Chem A 114:7213–7222

    Article  CAS  Google Scholar 

  39. Riley KE, Murray JS, Franfrlík J, Řezáč J, Solá RJ, Concha MC, Ramos RM, Politzer P (2011) J Mol Model 17:3309–3318

    Article  CAS  Google Scholar 

  40. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA et al (2009) Gaussian 09, Revision A.l. Gaussian Inc, Wallingford

    Google Scholar 

  41. Zhao Y, Truhlar DG (2008) Theor Chem Acc 120:215–241

    Article  CAS  Google Scholar 

  42. Zhao Y, Truhlar DG (2008) Acc Chem Res 41:157–167

    Article  CAS  Google Scholar 

  43. Murray JS, Lane P, Clark T, Riley KE, Politzer P (2012) J Mol Model 18:541–548

    Article  CAS  Google Scholar 

  44. Stewart RF (1979) Chem Phys Lett 65:335–342

    Article  CAS  Google Scholar 

  45. Politzer P, Truhlar DG (eds) (1981) Chemical applications of atomic and molecular electrostatic potentials. Plenum, New York

    Google Scholar 

  46. Bader RWF, Carroll MT, Cheeseman JR, Chang C (1987) J Am Chem Soc 109:7968–7979

    Article  CAS  Google Scholar 

  47. Bulat FA, Toro-Labbé A, Brinck T, Murray JS, Politzer P (2010) J Mol Model 16:1679–1691

    Article  CAS  Google Scholar 

  48. Politzer P, Shields ZP-I, Bulat FA, Murray JS (2011) J Chem Theor Comput 7:377–384

    Article  CAS  Google Scholar 

  49. Bondi A (1964) J Phys Chem 68:441–451

    Article  CAS  Google Scholar 

  50. Riley KE, Murray JS, Franfrlík J, Řezáč J, Solá RJ, Concha MC, Ramos RM, Politzer P (2012) J Mol Model. doi:10.1007/s00894-012-1428-x

  51. Reed AE, Curtiss LA, Weinhold F (1988) Chem Rev 88:899–926

    Article  CAS  Google Scholar 

  52. Huheey JE (1965) J Phys Chem 69:3284–3291

    Article  CAS  Google Scholar 

  53. Politzer P, Huheey JE, Murray JS, Grodzicki M (1992) J Mol Struct (THEOCHEM) 259:99–120

    Article  Google Scholar 

  54. Lide DR (ed) (2006) Handbook of chemistry and physics, 87th edn. CRC, Boca Raton

    Google Scholar 

  55. Politzer P (1969) J Am Chem Soc 91:6235–6237

    Article  CAS  Google Scholar 

  56. Politzer P (1987) J Chem Phys 86:1072–1073

    Article  CAS  Google Scholar 

Download references

Acknowledgments

The facilities at the University of Mauritius are acknowledged.

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Correspondence to Ponnadurai Ramasami.

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Bundhun, A., Ramasami, P., Murray, J.S. et al. Trends in σ-hole strengths and interactions of F3MX molecules (M = C, Si, Ge and X = F, Cl, Br, I). J Mol Model 19, 2739–2746 (2013). https://doi.org/10.1007/s00894-012-1571-4

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  • DOI: https://doi.org/10.1007/s00894-012-1571-4

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