Abstract
In this study, the operation of a cold store, located in 30–60 m depth in the North German Basin, was investigated by direct counting of bacteria and genetic fingerprinting analysis. Quantification of microbes accounted for 1 to 10⋅105 cells per ml fluid with minor differences in the microbial community composition between well and process fluids. The detected microorganisms belong to versatile phyla Proteobacteria and Flavobacteria. In addition to routine plant operation, a phase of plant malfunction caused by filter clogging was monitored. Increased abundance of sulfur-oxidizing bacteria indicated a change in the supply of electron acceptors, however, no changes in the availability of electron acceptors like nitrate or oxygen were detected. Sulfur- and iron-oxidizing bacteria played essential roles for the filter lifetimes at the topside facility and the injectivity of the wells due to the formation of biofilms and induced mineral precipitations. In particular, sulfur-oxidizing Thiothrix generated filamentous biofilms were involved in the filter clogging.
Zusammenfassung
Im Rahmen dieser Studie wurde der Betrieb eines in 30–60 m Tiefe gelegenen Kältespeichers des Norddeutschen Beckens durch Bestimmung der Bakterien-Zellzahlen und genetischer Fingerprinting-Analysen untersucht. Eine Zellzahlbestimmung ergab 1 bis 10⋅105 Zellen pro ml Fluid, wobei geringe Unterschiede in der mikrobiellen Zusammensetzung zwischen Brunnenproben und Prozessfluiden nachgewiesen wurden. Die identifizierten Mikroorganismen wurden den Phyla Proteobacteria und Flavobacteria zugeordnet. Neben routinemäßigem Anlagenbetrieb wurde eine Phase mit technischen Störungen durch zugesetzte Filter dokumentiert. Die Zunahme an Schwefel-oxidierenden Bakterien zeigte eine erhöhte Verfügbarkeit von Elektronenakzeptoren an, obwohl keine Änderungen in der Verfügbarkeit von Elektronenakzeptoren, wie Nitrat oder Sauerstoff, nachgewiesen werden konnte. Schwefel- und Eisen-oxidierende Bakterien spielten durch die Bildung von Biofilmen und induzierter mineralischer Ausfällungen eine essentielle Rolle für die Filterstandzeiten in der obertägigen Anlage und die Injektivität der Bohrungen. Vor allem Schwefel-oxidierende Thiothrix bildeten filamentöse Biofilme und trugen wesentlich zum Zusetzen der Filter bei.
Similar content being viewed by others
References
Amann, R., Glöckner, F.O., Neef, A.: Modern methods in subsurface microbiology: in situ identification of microorganisms with nucleic acid probes. FEMS Microbiol. Rev. 20(3–4), 191–200 (1997)
Alfreider, A., Loferer-Krössbacher, M., Psenner, R.: Influence of artificial groundwater lakes on the abundance and activity of bacteria in adjacent subsurface systems. Water Res. 31(4), 832–840 (1997)
Baker, M.A., Valett, H.M., Dahm, C.N.: Organic carbon supply and metabolism in a shallow groundwater ecosystem. Ecology 81(11), 3133–3148 (2000)
Bassam, B.J., Caetano-Anolles, G., Gresshoff, P.M.: Fast and sensitive staining of DNA in polyacrylamide gels. Anal. Biochem. 196, 80–83 (1991)
Beech, I.B., Sunner, J.: Biocorrosion: towards understanding interactions between biofilms and metals. Curr. Opin. Biotechnol. 15, 181–186 (2004)
Blöthe, M., Roden, E.E.: Microbial iron redox cycling in a circumneutral-ph groundwater seep. Appl. Environ. Microbiol. 75(2), 468–473 (2009)
Briée, C., Moreira, D., López-García, P.: Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond. Res. Microbiol. 158(3), 213–227 (2007)
Brigmon, R.L., Martin, H.W., Aldrich, H.C.: Biofouling of groundwater systems by Thiothrix spp. Curr. Opin. Microbiol. 35, 169–174 (1997)
Brigmon, R.L., de Ridder, C.: Symbiotic relationship of Thiothrix spp. with echinoderms. Appl. Environ. Microbiol. 64, 3491–3495 (1998)
Brigmon, R.L., Furlong, M., Whitman, W.B.: Identification of Thiothrix unzii in two distinct ecosystems. Lett. Appl. Microbiol. 36, 88–91 (2003)
Brielmann, H., Griebler, C., Schmidt, S.I., Michel, R., Lueders, T.: Effects of thermal energy discharge on shallow groundwater ecosystems. FEMS Microbiol. Ecol. 68(3), 273–286 (2009)
Celis-García, L.B., González-Blanco, G., Meraz, M.: Removal of sulfur inorganic compounds by a biofilm of sulfate reducing and sulfide oxidizing bacteria in a down-flow fluidized bed reactor. J. Chem. Technol. Biotechnol. 83(3), 260–268 (2008)
Chapelle, F.H.: Ground-Water Microbiology and Geochemistry. Wiley, New York (2001)
Coetser, S.E., Cloete, T.E.: Biofouling and biocorrosion in industrial water systems. Crit. Rev. Microbiol. 31(4), 213–232 (2005)
Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., Kulam-Syed-Mohideen, A.S., McGarrell, D.M., Marsh, T., Garrity, G.M., Tiedje, J.M.: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141–D145 (2009)
Costerton, J.W., Lewandowski, Z., Caldwell, D.E., Korber, D.R., Lappin-Scott, H.M.: Microbial biofilms. Annu. Rev. Microbiol. 49, 71l–745 (1995)
Cummings, D.E., Caccavo, F., Spring, S., Rosenzweig, R.F.: Ferribacterium limneticum, gen. nov., sp. nov., an Fe(III)-reducing microorganism isolated from mining-impacted freshwater lake sediments. Arch. Microbiol. 171, 183–188 (1999)
Cypionka, H., Widdel, F., Pfennig, N.: Survival of sulfate reducing bacteria after oxygen stress, and growth in sulfate-free oxygen sulfide gradients. FEMS Microbiol. Ecol. 31, 39–45 (1985)
Dann, A.L., Cooper, R.S., Bowman, J.P.: Investigation and optimization of a passively operated compost-based system for remediation of acidic, highly iron- and sulfate-rich industrial waste water. Water Res. 43(8), 2302–2316 (2009)
Dohrmann, A.B., Tebbe, C.C.: Microbial community analysis by PCR-single-strand conformation polymorphism (PCR-SSCP). In: Kowalchuk, G.A., de Bruijn, F.J., Head, I.M., Akkermans, A.D., van Elsas, J.D. (eds.) Molecular Microbial Ecology Manual, 2nd edn., pp. 809–838. Kluwer, Dordrecht (2004)
Dolla, A., Fournier, M., Dermoun, Z.: Oxygen defense in sulfate-reducing bacteria. J. Biotechnol. 126, 87–100 (2006)
Dunlap, W.J., McNabb, J.F., Scalf, M.R., Cosby, R.L.: Sampling for organic chemicals and microorganisms in the subsurface. U.S. Environment Protection Agency Report, pp. 77–176 (1977)
Eikelboom, D., Geurkink, B.: Filamentous microorganisms observed in industrial activated sludge plants. Water Sci. Technol. 46, 535–542 (2002)
Emerson, D.: Microbial oxidation of Fe(II) and Mn(II) at circumneutral pH. In: Lovely, D.R. (ed.) Environmental Microbe-Metal Interactions, pp. 31–52. ASM Press, Materials Park (2000)
Engel, A.S., Meisinger, D.B., Porter, M.L., Payn, R.A., Schmid, M., Stern, L.A., Schleifer, K.H., Lee, N.M.: Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA). ISME J. 4, 98–110 (2010)
Farquhar, G.J., Boyle, W.C.: Control of Thiothrix in activated sludge. J.- Water Pollut. Control Fed. 44, 14–24 (1972)
Flemming, H.C.: Biofouling in water systems—cases, causes and countermeasures. Appl. Microbiol. Biotechnol. 59, 629–640 (2002)
Flemming, H.C., Neu, T.R., Wozniak, D.J.: The EPS Matrix: The “House of Biofilm Cells”. J. Bacteriol. 189(22), 7945–7947 (2007)
Ford, H.W., Tucker, D.P.H.: Blockage of drip irrigation filters and emitters by iron-sulfur-bacterial products. HortScience 10, 62–64 (1975)
Freitag, T.E., Prosser, J.I.: Community structure of ammonia-oxidizing bacteria within anoxic marine sediments. Appl. Environ. Microbiol. 69, 1359–1371 (2003)
Geets, J., Borremans, B., Diels, L., Springael, D., Vangronsveld, J., van der Lelie, D., Vanbroekhoven, K.: DsrB gene-based DGGE for community and diversity surveys of sulfate-reducing bacteria. J. Microbiol. Methods 66(2), 194–205 (2006)
Ghiorse, W.C., Wilson, J.T.: Microbial ecology of the terrestrial subsurface. Adv. Appl. Microbiol. 33, 107–172 (1988)
Gibert, J.: Basic attributes of groundwater ecosystems and prospects for research. In: Gibert, J., Stanford, J.A., Danielopol, D.L. (eds.) Groundwater Ecology, vol. 571. Academic Press, San Diego (1994)
Griebler, C., Mindl, B., Slezak, D., Geiger-Kaiser, M.: Distribution patterns of attached and suspended bacteria in pristine and contaminated shallow aquifers studied with an in situ sediment exposure microcosm. Aquat. Microb. Ecol. 28, 117–129 (2002)
Griebler, C., Lueders, T.: Microbial biodiversity in groundwater ecosystems. Freshw. Biol. 54, 649–677 (2009)
Goldscheider, N., Hunkeler, D., Rossi, P.: Review: Microbial biocenoses in pristine aquifers and an assessment of investigative methods. Hydrogeol. J. 14(6), 926–941 (2006)
Haaijer, S.C.M., Harhangi, H.R., Meijerink, B.B., Strous, M., Pol, A., Smolders, A.J.P., Verwegen, K., Jetten, M.S.M., Op den Camp, H.J.M.: Bacteria associated with iron seeps in a sulfur-rich, neutral pH, freshwater ecosystem. ISME J. 2, 1231–1242 (2008)
Hall-Stoodley, L., William Costerton, J., Stoodley, P.: Bacterial biofilms from the natural environment to infectious diseases. Nat. Rev., Microbiol. 2, 95–198 (2004)
Harvey, R.W., Smith, R.L., George, L.: Effects of organic contamination upon microbial distributions and heterotrophic uptake in a Cape Cod, MA, aquifer. Appl. Environ. Microbiol. 48(6), 1197–1202 (1984)
Holmer, M., Storkholm, P.: Sulphate reduction and sulfur cycling in lake sediments: a review. Freshwat. Biol. 46(4), 431–451 (2001)
Holmes, B., Owen, R.J., McMeekin, T.A.: Genus Flavobacterium Bergey, Harrison, Breed, Hammer and Huntoon, 1923, 97, 353–361. In: Krieg, N.R. (ed.) Bergey’s Manual of Systematic Bacteriology, vol. 1. Williams & Wilkins, Baltimore (1984)
Honegger, J.L., Czernichowski-Lauriol, I., Criaud, A., Menjoz, A., Sainson, S., Guezennec, J.: Detailed study of sulfide scaling at la Courneuue Nord, a geothermal exploitation of the Paris Basin, France. Geothermics 18(1–2), 137–144 (1989)
Inagaki, F., Hayashi, S., Doi, K., Motomura, Y., Izawa, E., Ogata, S.: Microbial participation in the formation of siliceous deposits from geothermal water and analysis of the extremely thermophilic bacterial community. FEMS Microbiol. Ecol. 24(1), 41–48 (1997)
Ivanova, I.A., Stephen, J.R., Chang, Y.J., Brüggemann, J., Long, P.E., McKinley, J.P., Kowalchuk, G.A., White, D.C., Macnaughton, S.J.: A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the b-subdivision of the class proteobacteria in contaminated groundwater. Can. J. Microbiol. 46(11), 1012–1020 (2000)
Kabus, F., Seibt, P.: Aquifer thermal energy storage for the Berliner Reichstag building—new seat of the German Parliament. In: Proceedings of the World Geothermal Congress, pp. 3611–3615 (2000)
Kallmeyer, J., Smith, D.C., Spivack, A.J., D’Hondt, S.: New cell extraction procedure applied to deep subsurface sediments. Limnol. Oceanogr. Methods 6, 236–245 (2008)
Kampschreur, M.J., Tan, N.C.G., Picioreanu, C., Jetten, M.S.M., Schmidt, I., van Loosdrecht, M.C.M.: Role of nitrogen oxides in the metabolism of ammonia-oxidizing bacteria. Biochem. Soc. Trans. 34, 179–181 (2006)
Kim, I.S., Lee, G.H., Lee, K.J.: Monitoring and characterization of bacterial contamination in a high-purity water system used for semiconductor manufacturing. J. Microbiol. 38(2), 99–104 (2000)
Kirchman, D.L.: The ecology of Cytophaga–Flavobacteria in aquatic environments. FEMS Microbiol. Ecol. 39, 91–100 (2002)
Kodama, Y., Watanabe, K.: Isolation and characterization of a sulfur-oxidizing chemolithotroph growing on crude oil under anaerobic conditions. Appl. Environ. Microbiol. 69(1), 107–112 (2003)
Larkin, J.M., Shinabarger, D.L.: Characterization of Thiothrix nivea. Int. J. Syst. Bacteriol. 33, 841–846 (1983)
Lerm, S., Alawi, M., Miethling-Graff, R., Seibt, A., Wolfgramm, M., Rauppach, K., Würdemann, H.: Mikrobiologisches Monitoring in zwei geothermisch genutzten Aquiferen Norddeutschlands. Z. geol. Wissensch. (2011, in press)
Little, B.J., Lee, J.S.: Microbiologically Influenced Corrosion. In: Winston, R. (ed.) Wiley Series in Corrosion. Wiley, New York (2007)
Loosdrecht, M.C. van, Eikelboom, M.D., Gjaltema, A., Mulder, A., Tijhuis, L., Heijnen, J.J.: Biofilm structures. Water Sci. Technol. 32(8), 35–43 (1995)
López-Archilla, A.I., Moreira, D., Velasco, S., López-García, P.: Archaeal and bacterial community composition of a pristine coastal aquifer in Doñana National Park, Spain. Aquat. Microb. Ecol. 47, 123–139 (2007)
Macalady, J.L., Lyon, E.H., Koffman, B., Albertson, L.K., Meyer, K., Galdenzi, S., Mariani, S.: Dominant microbial populations in limestone-corroding stream biofilms, frasassi cave system, Italy. Appl. Environ. Microbiol. 72(8), 5596–5609 (2006)
Macalady, J.L., Dattagupta, S., Schaperdoth, I., Jones, D.S., Druschel, G.K., Eastman, D.: Niche differentiation among sulfur-oxidizing bacterial populations in cave waters. ISME J. 2, 590–601 (2008)
McGlannan, M.F., Makemson, J.C.: HCO3-fixation by naturally occurring tufts and pure cultures of Thiothrix nivea. Appl. Environ. Microbiol. 3, 730–738 (1990)
Miller, D.N., Smith, R.L.: Microbial characterization of nitrification in a shallow nitrogen-contaminated aquifer, Cape Cod, Massachusetts, and detection of a novel cluster associated with nitrifying Betaproteobacteria. J. Contam. Hydrol. 103(3–4), 182–193 (2009)
Morozova, D., Wandrey, M., Alawi, M., Zimmer, M., Vieth, A., Zettlitzer, M., Würdemann, H.: Monitoring of the microbial community composition in saline aquifers during CO2 storage by fluorescence in situ hybridisation. International Journal of Greenhouse Gas Control (2010)
Muyzer, G., Hottentrager, S., Teske, A., Wawer, C.: Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA. A new molecular approach to analyze the genetic diversity of mixed microbial communities. In: Akkermans, A.D.L., van Elsas, J.D., de Bruijn, F.J. (eds.) Molecular Microbial Ecology Manual, pp. 1–23. Kluwer Academic, Dordrecht (1996)
Nielsen, P.H., de Muro, M.A., Nielsen, J.L.: Studies on the in situ physiology of Thiothrix spp. present in activated sludge. Environ. Microbiol. 2(4), 389–398 (2000)
Opel, O., Eggerichs, T., Linares, J.A.N., Ruck, W.K.L.: Zusammenhänge zwischen gemessenen und aus Fe2+-Konzentrationen errechneten Redoxpotentialen in den Fluiden der thermischen Aquifer-Energiespeicher im Energiesystem der Parlamentsbauten am Spreebogen in Berlin. Vom Wasser 106(4), 3–38 (2008)
Pernthaler, J., Glöckner, F.O., Schönhuber, W., Amann, R.: Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods Microbiol. 30, 207–226 (2001)
Phelps, T.J., Fliermans, C.B., Garland, T.R., Pfiffner, S.M., White, D.C.: Methods for recovery of deep terrestrial subsurface sediments for microbiological studies. J. Microbiol. Methods 9(4), 267–279 (1989)
Pot, B., Gillis, M.: The genus Aquaspirillum. In: Ballows, A., Trüper, H.G.M., Dwonkin Hander, W., Schleifer, K.H. (eds.) The Prokaryotes, 2nd edn., vol. 3, pp. 2569–2582. Springer, New York (1992)
Pronk, M., Goldscheider, N., Zopfi, J.: Microbial communities in karst groundwater and their potential use for biomonitoring. Hydrogeol. J. 17, 37–48 (2009)
Reed, D.W., Smith, J.M., Francis, C.A., Fujita, Y.: Response of ammonia-oxidizing bacterial and archaeal populations to organic nitrogen amendments in low-nutrient groundwater. Appl. Environ. Microbiol. 76(8), 2517–2523 (2010)
Roden, E.E., Wetzel, R.G.: Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments. Microb. Ecol. 45, 252–258 (2003)
Rossetti, S., Blackall, L.L., Levantesi, C., Uccelletti, D., Tandoi, V.: Phylogenetic and physiological characterization of a heterotrophic, chemolithoautotrophic Thiothrix strain isolated from activated sludge. Int. J. Syst. Evol. Microbiol. 53, 1271–1276 (2003)
Sanner, B., Kabus, F., Seibt, P., Bartels, J.: Underground thermal energy storage for the German Parliament in Berlin. System concept and operational experiences. In: Proceedings World Geothermal Congress Antalya, paper 1438, pp. 1–8 (2005)
Satoh, H., Odagiri, M., Ito, T., Okabe, S.: Microbial community structures and in situ sulfate-reducing and sulfur-oxidizing activities in biofilms developed on mortar specimens in a corroded sewer system. Water Res. 43(18), 4729–4739 (2009)
Schwieger, F., Tebbe, C.C.: A new approach to utilize PCR–single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64, 4870–4876 (1998)
Smith, J.E.: Committee report on controll of microorganisms in drinking water. In: Lingireddy Srinivasa (ed.) Control of Microorganisms in Microorganisms, illustrated edn., pp. 1–8. American Society of Civil Engineers, Reston (2002)
Takai, K., Horikoshi, K.: Molecular phylogenetic analysis of archaeal intron-containing genes coding for rRNA obtained from a deep-subsurface geothermal water pool. Appl. Environ. Microbiol. 65(12), 5586–5589 (1999)
Valdez, B., Schorr, M., Quintero, M., Carrillo, M., Zlatev, R., Stoytcheva, M., de Dios Ocampo, J.: Corrosion and scaling at Cerro Prieto geothermal field. Anti-Corros. Methods Mater. 56(1), 28–34 (2009)
Vetter, A., Mangelsdorf, K., Wolfgramm, M., Rauppach, K., Schettler, G., Vieth-Hillebrand, A.: Variations in the fluid chemistry and membrane phospholipid fatty acid composition of the bacterial community in a cold storage groundwater system during iron clogging events. Water Res. (submitted)
Vieth, A., Mangelsdorf, K., Sykes, R., Horsfield, B.: Water extraction of coals—potential for estimating low molecular weight organic acids as carbon feedstock for the deep terrestrial biosphere. Org. Geochem. 39(8), 985–991 (2008)
Weber, K.A., Urrutia, M.M., Churchill, P.F., Kukkadapu, R.K., Roden, E.E.: Anaerobic redox cycling of iron by freshwater sediment microorganisms. Environ. Microbiol. 8(1), 100–113 (2006)
Williams, M.M., Domingo, J.W.S., Meckes, M.C., Kelty, C.A., Rochon, H.S.: Phylogenetic diversity of drinking water bacteria in a distribution system simulator. J. Appl. Microbiol. 96, 954–964 (2004)
Wilson, J.T., McNabb, J.F., Balkwill, D.L., Ghiorse, W.C.: Enumeration and Characterization of Bacteria indigenous to a shallow water-table aquifer. Groundwater 21(2), 134–142 (1983)
Wolfgramm, M., Rauppach, K., Puronpää-Schäfer, P.: Berliner Parlamentsbauten—Betrieb, Monitoring und Regenerierungen N2-beaufschlagter Kältespeicherbrunnen. EnergieWasserPraxis (2010)
Wolfe, R.L., Ward, N.R., Olson, B.H.: Inactivation of heterotrophic bacterial populations in finished drinking water by chlorine and chloramines. Water Res. 9(2), 1393–1403 (1985)
Wu, X., Yang, H.: Molecular characterization of sulfate-reducing bacteria in leachate-polluted aquifers in Laogang—a landfill along the shore of the East China Sea. Can. J. Microbiol. 55(7), 818–828 (2009)
Zarda, B., Hahn, D., Chatzinotas, A., Schönhuber, W., Neef, A., Amann, R., Zeyer, J.: Analysis of bacterial community structure in bulk soil by in situ hybridisation. Arch. Microbiol. 168, 185–192 (1997)
Acknowledgement
This research was funded by the BMU project “AquiScreen” (Nr. 0327634): “Betriebssicherheit der geothermischen Nutzung von Aquiferen unter besonderer Berücksichtigung mikrobiologischer Aktivität und Partikelumlagerungen – Screening an repräsentativen Standorten.” We thank Ben Cowie for critical revision of the manuscript.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Lerm, S., Alawi, M., Miethling-Graff, R. et al. Influence of microbial processes on the operation of a cold store in a shallow aquifer: impact on well injectivity and filter lifetime. Grundwasser 16, 93–104 (2011). https://doi.org/10.1007/s00767-011-0165-x
Received:
Revised:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00767-011-0165-x