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Genome characterization of the newly identified maize-associated totivirus Anhui

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Abstract

Maize-associated totivirus Anhui (MATV-Ah) is a novel totivirus with a 5536-nt genome and two large ORFs that encode a putative coat protein (CP) and an RNA-dependent RNA polymerase (RdRP). The two ORFs share amino acid identities of 32 and 56% when compared to other plant-associated totiviruses, respectively. Based on genome sequence similarity and phylogenetic analysis, MATV-Ah is proposed to be a member of the family Totiviridae genus Totivirus.

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References

  1. Chen S, Cao L, Huang Q, Qian Y, Zhou X (2016) The complete genome sequence of a novel maize-associated totivirus. Arch Virol 161:487–490

    Article  PubMed  CAS  Google Scholar 

  2. Kondo H, Hisano S, Chiba S, Maruyama K, Andika IB, Toyoda K, Fujimori F, Suzuki N (2016) Sequence and phylogenetic analyses of novel totivirus-like double-stranded RNAs from field-collected powdery mildew fungi. Virus Res 213:353–364

    Article  PubMed  CAS  Google Scholar 

  3. Lachnit T, Thomas T, Steinberg P (2016) Expanding our understanding of the seaweed holobiont: RNA viruses of the red alga delisea pulchra. Front Microbiol 6:1489

    Article  PubMed  PubMed Central  Google Scholar 

  4. Wu QF, Luo YJ, Lu R, Lau N, Lai EC, Li WX, Ding SW (2010) Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. P Natl Acad Sci USA 107:1606–1611

    Article  Google Scholar 

  5. Rybicki EP, Pietersen G (1999) Plant virus disease problems in the developing world. Advances in virus research. Elsevier, New York, pp 127–175

    Google Scholar 

  6. Chang ZX, Tang N, Wang L, Zhang LQ, Akinyemi IA, Wu QF (2016) Identification and characterization of microRNAs in the white-backed planthopper, sogatella furcifera. Insect Sci 23:452–468

    Article  PubMed  CAS  Google Scholar 

  7. Zerbino DR (2010) Using the velvet de novo assembler for short-read sequencing technologies. Curr Protoc Bioinform 31(1): 11–15

    Google Scholar 

  8. King AM, Lefkowitz E, Adams MJ, Carstens EB (2012) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses, vol 9. Elsevier, New York, p 642

    Google Scholar 

  9. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729

    Article  PubMed  PubMed Central  CAS  Google Scholar 

Download references

Funding

This work was supported by the CAS-TWAS fellowship obtained by I.A.A, the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant XDB11040400), the Ministry of Science and Technology of China (Grant 2014CB138405) and the Natural Science Foundation of Anhui Province (Grant 1608085QC59). The funders played no role in the study design, data collection, data analysis, decision to publish, or preparation of the manuscript.

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Correspondence to Qingfa Wu.

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The authors declare no competing interests.

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This article does not contain any studies involving human participants or animals.

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Handling Editor: F. Murilo Zerbini.

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Akinyemi, I.A., Wang, F., Chang, ZX. et al. Genome characterization of the newly identified maize-associated totivirus Anhui. Arch Virol 163, 2929–2931 (2018). https://doi.org/10.1007/s00705-018-3929-0

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  • DOI: https://doi.org/10.1007/s00705-018-3929-0

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