Abstract
Salivirus (family Picornaviridae) may be associated with acute gastroenteritis in humans, but there have been no reports of salivirus outbreaks. Salivirus A1 infection with faecal virus concentrations of 2.1-2.6 × 109/g were identified retrospectively in newborn babies, between the ages of 1.5 and 5 days, with apparent clinical symptoms of diarrhea (100 %), fever (40 %), vomiting (40 %), and loss of appetite (40 %) in a neonatal hospital unit in Hungary in July 2013. The complete genome sequence of the salivirus (including the 5′-terminal end) was determined. Salivirus mono-infection may be associated with gastroenteritis in babies who are a few days old. Salivirus testing should be done in public health laboratories in gastroenteritis outbreaks with unknown etiology.
References
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL (2009) The complete genome of klassevirus—a novel picornavirus in pediatric stool. Virol J 6:82
Holtz LR, Finkbeiner SR, Zhao G, Kirkwood CD, Girones R, Pipas JM, Wang D (2009) Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol J 6:86
Li L, Victoria J, Kapoor A et al (2009) A novel picornavirus associated with gastroenteritis. J Virol 83:12002–12006
Shan T, Wang C, Cui L, Yu Y, Delwart E, Zhao W, Zhu C, Lan D, Dai X, Hua X (2010) Picornavirus salivirus/klassevirus in children with diarrhea, China. Emerg Infect Dis 16:1303–1305
Han TH, Kim CH, Chung JY, Park SH, Hwang ES (2010) Klassevirus infection in children, South Korea. Emerg Infect Dis 16:1623–1625
Santos N, Mendes GS, Silva RC, Pena GA, Rojas M, Amorim AR, Lima DP (2015) Salivirus and aichivirus A infections in children with gastroenteritis in Brazil. Clin Microbiol Infect 21:799.e1–3
Nielsen ACY, Gyhrs ML, Nielsen LP, Pedersen C, Böttiger B (2013) Gastroenteritis and the novel picornaviruses aichi virus, cosavirus, saffold virus, and salivirus in young children. J Clin Virol 57:239–242
Greninger AL, Holtz L, Kang G, Ganem D, Wang D, DeRisi JL (2010) Serological evidence of human klassevirus infection. Clin Vaccine Immunol 17:1584–1588
Calgua B, Fumian T, Rusinol M, Rodriguez-Manzano J, Mbayed VA, Bofill-Mas S, Miagostovich M, Girones R (2013) Detection and quantification of classic and emerging viruses by skimmed-milk flocculation and PCR in river water from two geographical areas. Water Res 47:2797–2810
Kitajima M, Iker BC, Rachmadi AT, Haramoto E, Gerba CP (2014) Quantification and genetic analysis of salivirus/klassevirus in wastewater in Arizona, USA. Food Environ Virol 6:213–216
Haramoto E, Otagiri M (2013) Prevalence and genetic diversity of klassevirus in wastewater in Japan. Food Environ Virol 5:46–51
Vennema H, de Bruin E, Koopmans M (2002) Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J Clin Virol 25:233–235
Jiang X, Huang PW, Zhong WM, Farkas T, Cubitt DW, Matson DO (1999) Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR. J Virol Methods 83:145–154
Belliot G, Laveran H, Monroe SS (1997) Detection and genetic differentiation of human astroviruses: phylogenetic grouping varies by coding region. Arch Virol 142:1323–1334
Reuter G, Boldizsár Á, Pankovics P (2009) Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154:101–108
Boros A, Pankovics P, Simmonds P, Reuter G (2011) Novel positive-sense, single-stranded RNA (+ssRNA) virus with di-cistronic genome from intestinal content of freshwater carp (Cyprinus carpio). PLoS One 6:e29145
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95–98
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
Blom N, Hansen J, Blaas D, Brunak S (1996) Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networks. Protein Sci 5:2203–2216
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415
Darty K, Denise A, Ponty Y (2009) VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics 25:1974–1975
Sweeney TR, Dhote V, Yu Y, Hellen CU (2012) A distinct class of internal ribosomal entry site in members of the Kobuvirus and proposed Salivirus and Paraturdivirus genera of the Picornaviridae. J Virol 86:1468–1486
Boros A, Pankovics P, Reuter G (2014) Avian picornaviruses: Molecular evolution, genome diversity and unusual genome features of a rapidly expanding group of viruses in birds. Infect Genet Evol 28:151–166
Yu JM, Ao YY, Liu N, Li LL, Duan ZJ (2015) Salivirus in children and its association with childhood acute gastroenteritis: a paired case–control study. PLoS One 10(7):e0130977
Aldabbagh S, Eckerle I, Müller A, Delwart EL, Eis-Hübinger AM (2015) Salivirus type 1 and type 2 patients with acute gastroenteritis, Germany. J Clin Virol 72:16–19
Harris JM 2nd, Gwaltney JM (1996) Incubation periods of experimental rhinovirus infection and illness. Clin Infect Dis 23:1287–1290
Acknowledgments
This work was financially supported by a grant from the Hungarian Scientific Research Fund (OTKA/NKFIH K111615). ÁB was supported by the János Bolyai Research Scholarship of the Hungarian Academy of Science. Special thanks to Nick J. Knowles for proofreading the manuscript.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Boros, Á., Raáb, M., Károly, É. et al. A cluster of salivirus A1 (Picornaviridae) infections in newborn babies with acute gastroenteritis in a neonatal hospital unit in Hungary. Arch Virol 161, 1671–1677 (2016). https://doi.org/10.1007/s00705-016-2824-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-016-2824-9