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Molecular variation and recombination in RNA segment 10 of rice black-streaked dwarf virus isolated from China during 2007-2010

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Abstract

Rice black-streaked dwarf virus (RBSDV) is the causal agent of rice black-streaked dwarf and maize rough dwarf diseases in China. The only open reading frame encoding the viral outer capsid protein on S10 RNA of 21 RBSDV isolates was sequenced for phylogenetic and recombination analysis. Four natural recombinants were detected, and the recombinant breakpoints were identified. In addition, the distribution of synonymous and non-synonymous nucleotide changes revealed that the virus had been evolving under purifying selection.

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Acknowledgments

This research was supported by the National Basic Research Program of China (#2012CB114004) and grants from the Ministry of Education (IRT1042) and from the Ministry of Agriculture of China (2009ZX08003-011B).

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Authors and Affiliations

  1. State Key Laboratory of Agrobiotechnology and Key Laboratory for Plant Pathology, Ministry of Agriculture, China Agricultural University, Beijing, 100193, China

    Yongqiang Li, Mengao Jia, Zuodong Jiang, Tao Zhou & Zaifeng Fan

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  1. Yongqiang Li
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  2. Mengao Jia
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  3. Zuodong Jiang
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  4. Tao Zhou
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  5. Zaifeng Fan
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Correspondence to Tao Zhou or Zaifeng Fan.

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Li, Y., Jia, M., Jiang, Z. et al. Molecular variation and recombination in RNA segment 10 of rice black-streaked dwarf virus isolated from China during 2007-2010. Arch Virol 157, 1351–1356 (2012). https://doi.org/10.1007/s00705-012-1282-2

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  • DOI: https://doi.org/10.1007/s00705-012-1282-2

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