Abstract
Sudden death of healthy young adults in the absence of any medical reason is generally categorised as autopsy-negative sudden unexplained death (SUD). Approximately 30 % of all SUD cases can be explained by lethal sequence variants in cardiac genes causing disturbed ion channel functions (channelopathies) or minimal structural heart abnormalities (cardiomyopathies). The aim of this study was to perform whole-exome sequencing (WES) in five young SUD cases in order to identify potentially disease-causing mutations with a focus on 184 genes associated with cardiac diseases or sudden death. WES analysis enabled the identification of damaging-predicted cardiac sequence alterations in three out of five SUD cases. Two SUD victims carried disease-causing variants in long QT syndrome (LQTS)-associated genes (KCNH2, SCN5A). In a third case, WES identified variants in two genes involved in mitral valve prolapse and thoracic aortic aneurism (DCHS1, TGFβ2). The genome of a fourth case carried several minor variants involved in arrhythmia pointing to a multigene influence that might have contributed to sudden death. Our results confirm that post-mortem genetic testing in SUD cases in addition to the conventional autopsy can help to identify familial cardiac diseases and can contribute to the identification of genetic risk factors for sudden death.
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References
Wren C, Sullivan JJ, Wright C (2000) Sudden death in children and adolescents. Heart 83:410–413
van der Werf C, van Langen IM, Wilde AA (2010) Sudden death in the young: what do we know about it and how to prevent? Circ Arrhythm Electrophysiol 3:96–104. doi:10.1161/CIRCEP.109.877142
Ackerman MJ, Priori SG, Willems S, Berul C, Brugada R, Calkins H, Camm AJ, Ellinor PT, Gollob M, Hamilton R, Hershberger RE, Judge DP, Le Marec H, McKenna WJ, Schulze-Bahr E, Semsarian C, Towbin JA, Watkins H, Wilde A, Wolpert C, Zipes DP, Heart Rhythm S, European Heart Rhythm A (2011) HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies: this document was developed as a partnership between the Heart Rhythm Society (HRS) and the European Heart Rhythm Association (EHRA). Heart Rhythm 8:1308–1339. doi:10.1093/europace/eur245
Tester DJ, Ackerman MJ (2012) The molecular autopsy: should the evaluation continue after the funeral? Pediatr Cardiol 33:461–470. doi:10.1007/s00246-012-0160-8
Virmani R, Burke AP, Farb A (2001) Sudden cardiac death. Cardiovasc Pathol 10:1039–1044
Hofer F, Fellmann F, Schläpfer J, Michaud K (2014) Sudden cardiac death in the young (5–39 years) in the canton of Vaud, Switzerland. Cardiovasc Disord 14:1471–2261
Cerrone M, Priori SG (2011) Genetics of sudden death: focus on inherited channelopathies. Eur Heart J 32:2109–2118. doi:10.1093/eurheartj/ehr082
Narula N, Tester DJ, Paulmichl A, Maleszewski JJ, Ackerman MJ (2014) Post-mortem whole exome sequencing with gene-specific analysis for autopsy-negative sudden unexplained death in the young: a case series. Pediatr Cardiol. doi:10.1007/s00246-014-1082-4
Abriel H, Zaklyazminskaya EV (2013) Cardiac channelopathies: genetic and molecular mechanisms. Gene 517:1–11. doi:10.1016/j.gene.2012.12.061
Elliott P, Andersson B, Arbustini E, Bilinska Z, Cecchi F, Charron P, Dubourg O, Kühl U, Maisch B, McKenna WJ, Moserrat L, Pankuweit S, Rapezzi C, Seferovic P, Tavazzi L, Keren A (2008) Classification of the cardiomyopathies: a position statement from the European Society of Cardiology Working Group on Myocardial and Pericardial Diseases. Eur Heart J 29:270–276. doi:10.1093/eurheartj/ehm342, 10.1093/eurheartj/ehm585
Campuzano O, Alcalde M, Berne P, Castro V, Guzzo G, Iglesias A, Alonso-Pulpon L, Garcia-Pavia P, Brugada J, Brugada R (2012) Genetic testing of candidate genes in arrhythmogenic right ventricular cardiomyopathy/dysplasia. Eur J Med Genet 55:225–234. doi:10.1016/j.ejmg.2012.02.007
Loporcaro CG, Tester DJ, Maleszewski JJ, Kruisselbrink T, Ackerman MJ (2013) Confirmation of cause and manner of death via a comprehensive cardiac autopsy including whole exome next-generation sequencing. Arch Pathol Lab Med 138:1083–1089. doi:10.5858/arpa.2013-0479-SA
Campuzano O, Sanchez-Molero O, Allegue C, Coll M, Mademont-Soler I, Selga E, Ferrer-Costa C, Mates J, Iglesias A, Sarquella-Brugada G, Cesar S, Brugada J, Castella J, Medallo J, Brugada R (2014) Post-mortem genetic analysis in juvenile cases of sudden cardiac death. Forensic Sci Int 245C:30–37. doi:10.1016/j.forsciint.2014.10.004
Ng SB, Buckingham KJ, Lee C, Bigham AW, Tabor HK, Dent KM, Huff CD, Shannon PT, Jabs EW, Nickerson DA, Shendure J, Bamshad MJ (2010) Exome sequencing identifies the cause of a Mendelian disorder. Nat Genet 42:30–35. doi:10.1038/ng.499
Hertz CL, Christiansen SL, Ferrero-Miliani L, Fordyce SL, Dahl M, Holst AG, Ottesen GL, Frank-Hansen R, Bundgaard H, Morling N (2015) Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases. Int J Legal Med 129:793–800. doi:10.1007/s00414-014-1105-y
Behr E, Wood DA, Wright M, Syrris P, Sheppard MN, Casey A, Davies MJ, McKenna W (2003) Cardiological assessment of first-degree relatives in sudden arrhythmic death syndrome. Lancet 362:1457–1459. doi:10.1016/s0140-6736(03)14692-2
Stattin EL, Westin IM, Cederquist K, Jonasson J, Jonsson BA, Morner S, Norberg A, Krantz P, Wisten A (2015) Genetic screening in sudden cardiac death in the young can save future lives. Int J Legal Med. doi:10.1007/s00414-015-1237-8
Haghighi A, Tiwari A, Piri N, Nurnberg G, Saleh-Gohari N, Haghighi A, Neidhardt J, Nurnberg P, Berger W (2014) Homozygosity mapping and whole exome sequencing reveal a novel homozygous COL18A1 mutation causing Knobloch syndrome. PLoS One 9, e112747. doi:10.1371/journal.pone.0112747
Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26:589–595. doi:10.1093/bioinformatics/btp698
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Genome Project Data Processing S (2009) The sequence alignment/Map format and SAMtools. Bioinformatics 25:2078–2079. doi:10.1093/bioinformatics/btp352
Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38, e164. doi:10.1093/nar/gkq603
Attanasio C, David A, Neerman-Arbez M (2003) Outcome of donor splice site mutations accounting for congenital afibrinogenemia reflects order of intron removal in the fibrinogen alpha gene (FGA). Blood 101:1851–1856. doi:10.1182/blood-2002-03-0853
Zeek PM (1942) Heart weight I. The weight of the normal human heart. Arch Pathol 34:820–832
Roden DM (2008) Long-QT syndrome. N Engl J Med 358:169–176. doi:10.1056/NEJMcp0706513
Hayek E, Gring CN, Griffin BP (2005) Mitral valve prolapse. Lancet 365:507–518. doi:10.1016/s0140-6736(05)17869-6
Boileau C, Guo DC, Hanna N, Regalado ES, Detaint D, Gong L, Varret M, Prakash SK, Li AH, d’Indy H, Braverman AC, Grandchamp B, Kwartler CS, Gouya L, Santos-Cortez RL, Abifadel M, Leal SM, Muti C, Shendure J, Gross MS, Rieder MJ, Vahanian A, Nickerson DA, Michel JB, National Heart L, Blood Institute Go Exome Sequencing P, Jondeau G, Milewicz DM (2012) TGFB2 mutations cause familial thoracic aortic aneurysms and dissections associated with mild systemic features of Marfan syndrome. Nat Genet 44:916–921. doi:10.1038/ng.2348
Van Norstrand DW, Asimaki A, Rubinos C, Dolmatova E, Srinivas M, Tester DJ, Saffitz JE, Duffy HS, Ackerman MJ (2012) Connexin43 mutation causes heterogeneous gap junction loss and sudden infant death. Circulation 125:474–481. doi:10.1161/CIRCULATIONAHA.111.057224
Gollob MH, Jones DL, Krahn AD, Danis L, Gong X-Q, Shao Q, Lui X, Veinot JP, Tang AS, Stewart AW, Tesson F, Klein GJ, Yee R, Skanes AC, Guiraudon GM, Ebihara L, Bai D (2006) Somatic mutations in the connexin 40 gene (GJA5) in atrial fibrillation. N Engl J Med 354:2677–2688
Takeshima H, Komazaki S, Nishi M, Iino M, Kangawa K (2000) Junctophilins: a novel family of junctional membrane complex proteins. Mol Cell 6:11–22
Beavers DL, Wang W, Ather S, Voigt N, Garbino A, Dixit SS, Landstrom AP, Li N, Wang Q, Olivotto I, Dobrev D, Ackerman MJ, Wehrens XH (2013) Mutation E169K in junctophilin-2 causes atrial fibrillation due to impaired RyR2 stabilization. J Am Coll Cardiol 62:2010–2019. doi:10.1016/j.jacc.2013.06.052
Olesen MS, Jensen NF, Holst AG, Nielsen JB, Tfelt-Hansen J, Jespersen T, Sajadieh A, Haunso S, Lund JT, Calloe K, Schmitt N, Svendsen JH (2011) A novel nonsense variant in Nav1.5 cofactor MOG1 eliminates its sodium current increasing effect and may increase the risk of arrhythmias. Can J Cardiol 27(523):e517–523. doi:10.1016/j.cjca.2011.01.003
Wu L, Yong SL, Fan C, Ni Y, Yoo S, Zhang T, Zhang X, Obejero-Paz CA, Rho HJ, Ke T, Szafranski P, Jones SW, Chen Q, Wang QK (2008) Identification of a new co-factor, MOG1, required for the full function of cardiac sodium channel Nav 1.5. J Biol Chem 283:6968–6978. doi:10.1074/jbc.M709721200
Moss AJ (2002) Increased risk of arrhythmic events in long-QT syndrome with mutations in the pore region of the human ether-a-go-go-related gene potassium channel. Circulation 105:794–799. doi:10.1161/hc0702.105124
Gong Q, Zhang L, Vincent GM, Horne BD, Zhou Z (2007) Nonsense mutations in hERG cause a decrease in mutant mRNA transcripts by nonsense-mediated mRNA decay in human long-QT syndrome. Circulation 116:17–24. doi:10.1161/CIRCULATIONAHA.107.708818
Lin NC, Huang CL, Chen CY, Lin TY, Wang HY, Lu YH, Chen LM, Chen VC, Gossop M (2014) Effect of amphetamine on corrected-QT interval change during methadone maintenance treatment in Taiwan: a prospective cohort study. Drug Alcohol Rev 33:194–201. doi:10.1111/dar.12099
van Noord C, Eijgelsheim M, Stricker BH (2010) Drug- and non-drug-associated QT interval prolongation. Br J Clin Pharmacol 70:16–23. doi:10.1111/j.1365-2125.2010.03660.x
Crotti L, Hu D, Barajas-Martinez H, De Ferrari GM, Oliva A, Insolia R, Pollevick GD, Dagradi F, Guerchicoff A, Greco F, Schwartz PJ, Viskin S, Antzelevitch C (2012) Torsades de pointes following acute myocardial infarction: evidence for a deadly link with a common genetic variant. Heart Rhythm 9:1104–1112. doi:10.1016/j.hrthm.2012.02.014
Crotti L, Lundquist AL, Insolia R, Pedrazzini M, Ferrandi C, De Ferrari GM, Vicentini A, Yang P, Roden DM, George AL Jr, Schwartz PJ (2005) KCNH2-K897T is a genetic modifier of latent congenital long-QT syndrome. Circulation 112:1251–1258. doi:10.1161/CIRCULATIONAHA.105.549071
Kato K, Makiyama T, Wu J, Ding WG, Kimura H, Naiki N, Ohno S, Itoh H, Nakanishi T, Matsuura H, Horie M (2014) Cardiac channelopathies associated with infantile fatal ventricular arrhythmias: from the cradle to the bench. J Cardiovasc Electrophysiol 25:66–73. doi:10.1111/jce.12270
Horigome H, Nagashima M, Sumitomo N, Yoshinaga M, Ushinohama H, Iwamoto M, Shiono J, Ichihashi K, Hasegawa S, Yoshikawa T, Matsunaga T, Goto H, Waki K, Arima M, Takasugi H, Tanaka Y, Tauchi N, Ikoma M, Inamura N, Takahashi H, Shimizu W, Horie M (2010) Clinical characteristics and genetic background of congenital long-QT syndrome diagnosed in fetal, neonatal, and infantile life: a nationwide questionnaire survey in Japan. Circ Arrhythm Electrophysiol 3:10–17. doi:10.1161/CIRCEP.109.882159
Gui J, Wang T, Trump D, Zimmer T, Lei M (2010) Mutation-specific effects of polymorphism H558R in SCN5A-related sick sinus syndrome. J Cardiovasc Electrophysiol 21:564–573. doi:10.1111/j.1540-8167.2010.01762.x
Kauferstein S, Kiehne N, Peigneur S, Tytgat J, Bratzke H (2013) Cardiac channelopathy causing sudden death as revealed by molecular autopsy. Int J Legal Med 127:145–151. doi:10.1007/s00414-012-0679-5
Iyer VR, Chin AJ (2013) Arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC/D). Am J Med Genet C: Semin Med Genet. doi:10.1002/ajmg.c.31368
Morey M, Fernandez-Marmiesse A, Castineiras D, Fraga JM, Couce ML, Cocho JA (2013) A glimpse into past, present, and future DNA sequencing. Mol Genet Metab 110:3–24. doi:10.1016/j.ymgme.2013.04.024
Stitziel NO, Kiezun A, Sunyaev S (2011) Computational and statistical approaches to analyzing variants identified by exome sequencing. Genome Biol 12. doi:10.1186/gb-2011-12-9-227
Koboldt DC, Steinberg KM, Larson DE, Wilson RK, Mardis ER (2013) The next-generation sequencing revolution and its impact on genomics. Cell 155:27–38. doi:10.1016/j.cell.2013.09.006
Killeen MJ (2009) Drug-induced arrhythmias and sudden cardiac death: implications for the pharmaceutical industry. Drug Discov Today 14:589–597. doi:10.1016/j.drudis.2009.03.004
Michaud K, Fellmann F, Abriel H, Beckmann JS, Mangin P, Elger BS (2009) Molecular autopsy in sudden cardiac death and its implication for families: discussion of the practical, legal and ethical aspects of the multidisciplinary collaboration. Swiss Med Wkly 139:712–718
Acknowledgments
This project was supported by the Swiss National Science Foundation (SNF, project-Nr. 320030_149456). Special thanks to Luzy Bähr and Silke Feil for technical support, to Barbara Fliss for the colour images of the histological sections, and to Claudine Rieubland for additional information regarding the family history of case V.
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Neubauer, J., Haas, C., Bartsch, C. et al. Post-mortem whole-exome sequencing (WES) with a focus on cardiac disease-associated genes in five young sudden unexplained death (SUD) cases. Int J Legal Med 130, 1011–1021 (2016). https://doi.org/10.1007/s00414-016-1317-4
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DOI: https://doi.org/10.1007/s00414-016-1317-4