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Short-Chain Poly(γ-diaminobutanoic acid), A Poly(amino acid) Produced by a Marine Bacteria Bacillus pumilus

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Abstract

One marine bacteria Bacillus pumilus was isolated using allura red as ε-poly-L-lysine (ε-PL) secretion indicator. But actually the product was identified as poly-γ-L-diaminobutanoic acid (γ-PAB) by ionization-time-of-flight mass spectrometry, not coproduced with ε-PL. The polymerization degree of γ-PAB was 4–22, namely short-chain γ-PAB, compared with that in S. celluloflavus, and it exhibited stronger inhibitory activities against yeasts than long-chain γ-PAB but weaker activities against bacteria. The fermentative behavior of B. pumilus was investigated, and the γ-PAB production was 38.6 mg/L in shake flask and was enhanced to 284.2 mg/L in 5-L bioreactor by a pH control strategy. Interestingly, the suitable pH for B. pumilus to produce γ-PAB was 4.8, different from 4.0 for current Streptomyces strains, which suggests a potential new metabolic mechanism in B. pumilus as a novel γ-PAB producer. No studies on short-chain γ-PAB production in bacteria have been reported previously and we considered that this is a new discovery in the field of homopolymer research.

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All data generated or analysed during this study are included in this published article.

References

  1. Kunioka M (1997) Biosynthesis and chemical reactions of poly(amino acid)s from microorganisms. Appl Microbiol Biotechnol 47:469–475. https://doi.org/10.1007/s002530050958

    Article  CAS  Google Scholar 

  2. Yamanaka K, Maruyama C, Takagi H (2008) epsilon-poly-l-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase. Nat Chem Biol 4:766–772. https://doi.org/10.1038/nchembio.125

    Article  CAS  PubMed  Google Scholar 

  3. Obst M, Steinbüchel A (2004) Microbial degradation of poly(amino acid)s. Biomacromol 5:1166–1176. https://doi.org/10.1021/bm049949u

    Article  CAS  Google Scholar 

  4. Hiraki J, Ichikawa T, Ninomiya S (2003) Use of ADME studies to confirm the safety of polylysine as a preservative in food. Regul Toxicol Pharm 37:328–340. https://doi.org/10.1016/S0273-2300(03)00029-1

    Article  CAS  Google Scholar 

  5. Xia J, Xu H, Feng X, Xu Z, Chi B (2013) Poly(L-diaminopropionic acid), a novel non-proteinic amino acid oligomer co-produced with poly(ε-l-lysine) by Streptomyces albulus PD-1. Appl Microbiol Biot 97:7597–7605. https://doi.org/10.1007/s00253-013-4936-4

    Article  CAS  Google Scholar 

  6. Takehara M, Saimura M, Inaba H, Hirohara H (2008) Poly(γ-L-diaminobutanoic acid), a novel poly(amino acid), coproduced with poly(ε-L-lysine) by two strains of Streptomyces celluloflavus. FEMS Microbiol Lett 286:110–117. https://doi.org/10.1111/j.1574-6968.2008.01261.x

    Article  CAS  PubMed  Google Scholar 

  7. Xu Z-X, Sun Z-Z, Li S, Xu Z, Cao C-G, Xu Z-Q, Feng X-H, Xu H (2015) Systematic unravelling of the biosynthesis of poly(L-diaminopropionic acid) in Streptomyces albulus PD-1. Sci Rep 5:17–28. https://doi.org/10.1038/srep17400

    Article  CAS  Google Scholar 

  8. Chen X-S, Ren X-D, Zeng X, Mao Z-G (2013) Enhancement of ε-poly-L-lysine production coupled with precursor L-lysine feeding in glucose-glycerol co-fermentation by Streptomyces sp. M-Z18. Bioprocess Biosyst Eng 36:1843–1849. https://doi.org/10.1007/s00449-013-0958-7

    Article  CAS  PubMed  Google Scholar 

  9. Hirohara H, Munenori T, Masayuki S (2006) Biosynthesis of poly(ε-L-lysine)s in two newly isolated strains of Streptomyces sp. Appl Microbiol Biotechnol 73:321–331. https://doi.org/10.1007/s00253-006-0479-2

    Article  CAS  PubMed  Google Scholar 

  10. Zhang Y, Feng X-H, Xu H, Yao Z (2010) ε-Poly-L-lysine production by immobilized cells of Kitasatospora sp. MY 5–36 in repeated fed-batch cultures. Bioresour Technol 14:5523–5527. https://doi.org/10.1016/j.biortech.2010.02.021

    Article  CAS  Google Scholar 

  11. Li S, Tang L, Chen X-S, Liao L-J, Li F, Mao Z-G (2011) Isolation and characterization of a novel ε-poly-L-lysine producing strain: Streptomyces griseofuscus. J Ind Microbiol Biotechnol 38:557–563. https://doi.org/10.1007/s10295-010-0803-9

    Article  CAS  PubMed  Google Scholar 

  12. Li S, Li F, Chen X-S, Wang L, Tang L, Mao Z-G (2012) Genome shuffling enhanced ε-Poly-L-Lysine production by improving glucose tolerance of Streptomyces graminearus. Appl Biochem Biotechnol 166:414–423. https://doi.org/10.1007/s12010-011-9437-2

    Article  CAS  PubMed  Google Scholar 

  13. Nermeen A, Abeer E, Samia S, Dunja M, Soraya A (2012) Antibacterial and anticancer activity of ε-poly-L-lysine (ε-PL) produced by a marine Bacillus subtilis sp. J Basic Microb 52:1–10. https://doi.org/10.1002/jobm.201100290

    Article  CAS  Google Scholar 

  14. Anuj HC, Madhavi R (2015) Enhancement of ε-poly-L-lysine (ε-PL) production by a novel producer Bacillus cereus using metabolic precursors and glucose feeding. Biotech 5:839–846. https://doi.org/10.1007/s13205-015-0291-8

    Article  Google Scholar 

  15. Wang L, Chen X-S, Wu G-Y, Zeng X, Ren X-D, Li S, Mao Z-G (2016) Genome shuffling and gentamicin-resistance to improve ε-poly-L-lysine productivity of Streptomyces albulus W-156. Appl Biochem Biotechnol 180:1601–1617. https://doi.org/10.1007/s12010-016-2190-9

    Article  CAS  PubMed  Google Scholar 

  16. Nishikawa M, Ogawa K (2002) Distribution of microbes producing antimicrobial ε-Poly-L-Lysine polymers in soil microflora determined by a novel method. Appl Environ Microb 68:3575–3581. https://doi.org/10.1128/AEM.68.7.3575-3581

    Article  CAS  Google Scholar 

  17. Shima S, Sakai H (1981) Poly-L-lysine produced by Streptomyces. part III. chemical studies. Agric Biol Chem 45:2497–2502. https://doi.org/10.1080/00021369.1981.10864930

    Article  CAS  Google Scholar 

  18. Takehara M, Hibino A, Saimura M, Hirohara H (2010) High-yield production of short chain length poly(ε-L-lysine) consisting of 5–20 residues by Streptomyces aureofaciens, and its antimicrobial activity. Biotechnol Lett 32:1299–1303. https://doi.org/10.1007/s10529-010-0294-9

    Article  CAS  PubMed  Google Scholar 

  19. Kahar P, Lwata T, Hiraki J (2001) Enhancement of ε-poly-L-lysine production by Streptomyces albulus strain 410 using pH control. J Biosci Bioeng 91:190–194. https://doi.org/10.1016/S1389-1723(01)80064-5

    Article  CAS  PubMed  Google Scholar 

  20. Kito M, Takimoto R, Yoshida T, Nagasawa T (2002) Purification and characterization of ε-poly-L-lysine-degrading enzyme from the ε-poly-L-lysine tolerant Chryseobactrium sp QJ7. J Biosci Bioeng 1:92–104. https://doi.org/10.1016/S1389-1723(03)90105-8

    Article  Google Scholar 

  21. Yamanaka K, Kito N, Imokawa Y (2010) Mechanism of ε-poly-L-lysine production and accumulation revealed by identification and analysis of an ε-poly-L-lysine degrading enzyme. Appl Environ Microbiol 68:5669–5675. https://doi.org/10.1128/AEM.00853-10

    Article  CAS  Google Scholar 

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Acknowledgement

We appreciated Liang Wang for mass spectrometry analysis in the manuscript.

Funding

This work was financially supported by Shandong Natural Science Foundation (ZR2019BC044).

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Correspondence to Shu Li.

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Li, S., Yao, Y., Hu, S. et al. Short-Chain Poly(γ-diaminobutanoic acid), A Poly(amino acid) Produced by a Marine Bacteria Bacillus pumilus. Curr Microbiol 78, 1142–1149 (2021). https://doi.org/10.1007/s00284-021-02371-6

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  • DOI: https://doi.org/10.1007/s00284-021-02371-6

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