Skip to main content
Log in

Deep learning-based multi-parametric magnetic resonance imaging (mp-MRI) nomogram for predicting Ki-67 expression in rectal cancer

  • Hollow Organ GI
  • Published:
Abdominal Radiology Aims and scope Submit manuscript

Abstract

Purpose

To explore the value of deep learning-based multi-parametric magnetic resonance imaging (mp-MRI) nomogram in predicting the Ki-67 expression in rectal cancer.

Methods

The data of 491 patients with rectal cancer from two centers were retrospectively analyzed and divided into training, internal validation, and external validation sets. They were categorized into high- and low-expression group based on postoperative pathological Ki-67 expression. Each patient’s mp-MRI data were analyzed to extract and select the most relevant features of deep learning, and a deep learning model was constructed. Independent predictive risk factors were identified and incorporated into a clinical model, and the clinical and deep learning models were combined to obtain a nomogram for the prediction of Ki-67 expression. The performance characteristics of the DL-model, clinical model, and nomogram were assessed using ROCs, calibration curve, decision curve, and clinical impact curve analysis.

Results

The strongest deep learning features were extracted and screened from mp-MRI data. Two independent predictive factors, namely Magnetic Resonance Imaging T (mrT) staging and differentiation degree, were identified through clinical feature selection. Three models were constructed: a deep learning (DL)-model, a clinical model, and a nomogram. The AUCs of clinical model in the training, internal validation, and external validation set were 0.69, 0.78, and 0.67, respectively. The AUCs of the deep model and nomogram ranged from 0.88 to 0.98. The prediction performance of the deep learning model and nomogram was significantly better than the clinical model (P < 0.001).

Conclusion

The nomogram based on deep learning can help clinicians accurately and conveniently predict the expression status of Ki-67 in rectal cancer.

Graphical abstract

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

References

  1. Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, et al. Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries. CA Cancer J Clin. 2021;71(3):209-249.

    Article  PubMed  Google Scholar 

  2. Dekker E, Tanis PJ, Vleugels JLA, Kasi PM, Wallace MB. Colorectal cancer. Lancet. 2019;394(10207):1467-1480.

    Article  PubMed  Google Scholar 

  3. Cui Y, Liu H, Ren J, Du X, Xin L, Li D, et al. Development and validation of a MRI-based radiomics signature for prediction of KRAS mutation in rectal cancer. Eur Radiol. 2020;30(4):1948-1958.

    Article  CAS  PubMed  Google Scholar 

  4. Mondaca S, Yaeger R. Genetics of rectal cancer and novel therapies: primer for radiologists. Abdom Radiol (NY). 2019;44(11):3743-3750.

    Article  PubMed  PubMed Central  Google Scholar 

  5. Viani L, Dell'Abate P, Del Rio P, Marchesi F, Tartamella F, Rossini M, et al. Colorectal cancer screenings: a single center experience. Acta Biomed. 2020;91(4):e2020101.

    PubMed  PubMed Central  Google Scholar 

  6. Santiago I, Figueiredo N, Parés O, Matos C. MRI of rectal cancer-relevant anatomy and staging key points. Insights Imaging. 2020;11(1):100.

    Article  PubMed  PubMed Central  Google Scholar 

  7. Xie J, Zhao Y, Zhou Y, He Q, Hao H, Qiu X, et al. Predictive Value of Combined Preoperative Carcinoembryonic Antigen Level and Ki-67 Index in Patients With Gastric Neuroendocrine Carcinoma After Radical Surgery. Front Oncol. 2021;11:533039.

    Article  PubMed  PubMed Central  Google Scholar 

  8. Smith I, Robertson J, Kilburn L, Wilcox M, Evans A, Holcombe C, et al. Long-term outcome and prognostic value of Ki67 after perioperative endocrine therapy in postmenopausal women with hormone-sensitive early breast cancer (POETIC): an open-label, multicentre, parallel-group, randomised, phase 3 trial. Lancet Oncol. 2020;21(11):1443-1454.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Ao W, Bao X, Mao G, Yang G, Wang J, Hu J. Value of Apparent Diffusion Coefficient for Assessing Preoperative T Staging of Low Rectal Cancer and Whether This Is Correlated With Ki-67 Expression. Can Assoc Radiol J. 2020;71(1):5-11.

    Article  PubMed  Google Scholar 

  10. Imaizumi K, Suzuki T, Kojima M, Shimomura M, Sakuyama N, Tsukada Y, et al. Ki67 expression and localization of T cells after neoadjuvant therapies as reliable predictive markers in rectal cancer. Cancer Sci. 2020;111(1):23-35.

    Article  CAS  PubMed  Google Scholar 

  11. Tong G, Zhang G, Liu J, Zheng Z, Chen Y, Niu P, et al. Cutoff of 25% for Ki67 expression is a good classification tool for prognosis in colorectal cancer in the AJCC-8 stratification. Oncol Rep. 2020;43(4):1187-1198.

    CAS  PubMed  PubMed Central  Google Scholar 

  12. Boros M, Moncea D, Moldovan C, Podoleanu C, Georgescu R, Stolnicu S. Intratumoral Heterogeneity for Ki-67 Index in Invasive Breast Carcinoma: A Study on 131 Consecutive Cases. Appl Immunohistochem Mol Morphol. 2017;25(5):338-340.

    Article  CAS  PubMed  Google Scholar 

  13. Kather JN, Pearson AT, Halama N, Jäger D, Krause J, Loosen SH, et al. Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer. Nat Med. 2019;25(7):1054-1056.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. De Paepe KN, Cunningham D. Deep learning as a staging tool in gastric cancer. Ann Oncol. 2020;31(7):827-828.

    Article  PubMed  Google Scholar 

  15. Liu W, Cheng Y, Liu Z, Liu C, Cattell R, et al. Preoperative Prediction of Ki-67 Status in Breast Cancer with Multiparametric MRI Using Transfer Learning. Acad Radiol. 2021;28(2):e44-e53.

    Article  PubMed  Google Scholar 

  16. Liang C, Cheng Z, Huang Y, He L, Chen X, Ma Z, et al. An MRI-based Radiomics Classifier for Preoperative Prediction of Ki-67 Status in Breast Cancer. Acad Radiol. 2018;25(9):1111-1117.

    Article  PubMed  Google Scholar 

  17. Shen L, Zhou G, Tong T, Tang F, Lin Y, Zhou J, et al. ADC at 3.0 T as a noninvasive biomarker for preoperative prediction of Ki67 expression in invasive ductal carcinoma of breast. Clin Imaging. 2018;52:16-22.

    Article  PubMed  Google Scholar 

  18. Li L, Chen W, Yan Z, Feng J, Hu S, Liu B, et al. Comparative Analysis of Amide Proton Transfer MRI and Diffusion-Weighted Imaging in Assessing p53 and Ki-67 Expression of Rectal Adenocarcinoma. J Magn Reson Imaging. 2020;52(5):1487-1496.

    Article  PubMed  Google Scholar 

  19. Beets-Tan RG, Beets GL. MRI for assessing and predicting response to neoadjuvant treatment in rectal cancer. Nat Rev Gastroenterol Hepatol. 2014;11(8):480-8.

    Article  CAS  PubMed  Google Scholar 

  20. Yao X, Ao W, Zhu X, Tian S, Han X, Hu J, et al. A novel radiomics based on multi-parametric magnetic resonance imaging for predicting Ki-67 expression in rectal cancer: a multicenter study. BMC Med Imaging. 2023;23(1):168.

    Article  PubMed  PubMed Central  Google Scholar 

  21. Yang Y, Li J, Jin L, Wang D, Zhang J, Wang J, et al. Independent Correlation Between Ki67 Index and Circulating Tumor Cells in the Diagnosis of Colorectal Cancer. Anticancer Res. 2017;37(8):4693-4700.

    CAS  PubMed  Google Scholar 

  22. Li P, Xiao ZT, Braciak TA, Ou QJ, Chen G, Oduncu FS. Association between Ki67 Index and Clinicopathological Features in Colorectal Cancer. Oncol Res Treat. 2016;39(11):696-702.

    Article  CAS  PubMed  Google Scholar 

  23. Yerushalmi R, Woods R, Ravdin PM, Hayes MM, Gelmon KA. Ki67 in breast cancer: prognostic and predictive potential. Lancet Oncol. 2010;11(2):174-83.

    Article  CAS  PubMed  Google Scholar 

  24. Li S, Chen X, Shen K. Association of Ki-67 Change Pattern After Core Needle Biopsy and Prognosis in HR+/HER2- Early Breast Cancer Patients. Front Surg. 2022;9:905575.

    Article  PubMed  PubMed Central  Google Scholar 

  25. Klæstad E, Opdahl S, Raj SX, Bofin AM, Valla M. Long term trends of breast cancer incidence according to proliferation status. BMC Cancer. 2022;22(1):1340.

    Article  PubMed  PubMed Central  Google Scholar 

  26. Vlajnic T, Brunner P, Eppenberger-Castori S, Rentsch CA, Zellweger T, Bubendorf L. High Inter- and Intratumoral Variability of Ki67 Labeling Index in Newly Diagnosed Prostate Cancer with High Gleason Scores. Pathobiology. 2022;89(2):74-80.

    Article  CAS  PubMed  Google Scholar 

  27. Wang L, Liu Z, Fisher KW, Ren F, Lv J, Davidson DD, et al. Prognostic value of programmed death ligand 1, p53, and Ki-67 in patients with advanced-stage colorectal cancer. Hum Pathol. 2018;71:20-29.

    Article  CAS  PubMed  Google Scholar 

  28. Meng X, Li H, Kong L, Zhao X, Huang Z, Zhao H, et al. MRI In rectal cancer: Correlations between MRI features and molecular markers Ki-67, HIF-1α, and VEGF. J Magn Reson Imaging. 2016;44(3):594-600.

    Article  PubMed  Google Scholar 

  29. Deng S, Ding J, Wang H, Mao G, Sun J, Hu J, et al. Deep learning-based radiomic nomograms for predicting Ki67 expression in prostate cancer. BMC Cancer. 2023;23(1):638.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Li H, Liu Z, Li F, Shi F, Xia Y, Zhou Q, et al. Preoperatively Predicting Ki67 Expression in Pituitary Adenomas Using Deep Segmentation Network and Radiomics Analysis Based on Multiparameter MRI. Acad Radiol. 2023:S1076-6332(23)00278-7.

    Google Scholar 

  31. Lin SL. Application Combining VMD and ResNet101 in Intelligent Diagnosis of Motor Faults. Sensors (Basel). 2021;21(18):6065.

    Article  PubMed  PubMed Central  ADS  Google Scholar 

  32. Chen YM, Huang WT, Ho WH, Tsai JT. Classification of age-related macular degeneration using convolutional-neural-network-based transfer learning. BMC Bioinformatics. 2021;22(Suppl 5):99.

    Article  PubMed  PubMed Central  Google Scholar 

  33. You J, Yin J. Performances of Whole Tumor Texture Analysis Based on MRI: Predicting Preoperative T Stage of Rectal Carcinomas. Front Oncol. 2021;11:678441.

    Article  PubMed  PubMed Central  Google Scholar 

  34. Meng X, Xia W, Xie P, Zhang R, Li W, Wang M, et al. Preoperative radiomic signature based on multiparametric magnetic resonance imaging for noninvasive evaluation of biological characteristics in rectal cancer. Eur Radiol. 2019;29(6):3200-3209.

    Article  PubMed  Google Scholar 

  35. Heijnen LA, Lambregts DM, Mondal D, Martens MH, Riedl RG, Beets GL, et al. Diffusion-weighted MR imaging in primary rectal cancer staging demonstrates but does not characterise lymph nodes. Eur Radiol. 2013;23(12):3354-60.

    Article  PubMed  Google Scholar 

  36. Su Y, Zhao H, Liu P, Zhang L, Jiao Y, Xu P, et al. A nomogram model based on MRI and radiomic features developed and validated for the evaluation of lymph node metastasis in patients with rectal cancer. Abdom Radiol (NY). 2022;47(12):4103-4114.

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

Not application

Funding

This work was supported by the Medical Science and Technology Project of Zhejiang Province (2022KY122, 2024KY052); Traditional Chinese Medicine Science and Technology Project of Zhejiang Province (2024ZL040).

Author information

Authors and Affiliations

Authors

Contributions

SW, WA, and GM contributed to the study conception and design. Material preparation, data collection, and analysis were performed by NW, JH, and WX. The first draft of the manuscript was written by SW and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.

Corresponding author

Correspondence to Guoqun Mao.

Ethics declarations

Conflict of interest

The authors declare that there is no conflict of interest.

Consent for publication

Not application.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Wu, S., Wang, N., Ao, W. et al. Deep learning-based multi-parametric magnetic resonance imaging (mp-MRI) nomogram for predicting Ki-67 expression in rectal cancer. Abdom Radiol (2024). https://doi.org/10.1007/s00261-024-04232-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00261-024-04232-9

Keywords

Navigation