Abstract
Uric acid (UA) is an important biomarker for clinical diagnosis. Here, we present a novel signal transduction system for the development of UA biosensors with the characteristics of stability and ease-of-use. In this system, bacterial allosteric transcription factor HucR was used as the bio-recognition element, and the competition between HucR and the restriction endonuclease HindIII-HF to bind to the designed DNA template was employed to enable signal transduction of UA recognized by HucR. The presence of UA can induce conformational change of HucR, which dissociates HucR from the designed DNA template, allowing the access of the competitor HindIII-HF to cut this DNA template. Thus, the signal of UA recognized by HucR is transduced to easily detectable DNA signal. As proof-of-concept, we demonstrated two UA biosensors by coupling this signal transduction system with real-time quantitative PCR (RT-qPCR) and amplified luminescent proximity homogeneous assay (Alpha), respectively. The RT-qPCR-based UA biosensor has a detection limit of 5 nM with a linear range up to 300 nM UA; Alpha-based UA biosensor has a detection limit of 30 nM with a linear range of 100 nM–10 μM. Moreover, the robustness of both biosensors was verified by reliably detecting UA present in a human serum sample. Altogether, the novel UA biosensors developed in this work hold great potential for clinical application.
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References
Azmi NE, Ramli NI, Abdullah J, Abdul Hamid MA, Sidek H, Abd Rahman S, Ariffin N, Yusof NA (2015) A simple and sensitive fluorescence based biosensor for the determination of uric acid using H2O2-sensitive quantum dots/dual enzymes. Biosens Bioelectron 67:129–133. https://doi.org/10.1016/j.bios.2014.07.056
Burlein C, Bahnck C, Bhatt T, Murphy D, Lemaire P, Carroll S, Miller MD, Lai MT (2014) Development of a sensitive amplified luminescent proximity homogeneous assay to monitor the interactions between pTEFb and Tat. Anal Biochem 465:164–171. https://doi.org/10.1016/j.ab.2014.08.007
Fang A, Wu Q, Lu Q, Chen H, Li H, Liu M, Zhang Y, Yao S (2016) Upconversion ratiometric fluorescence and colorimetric dual-readout assay for uric acid. Biosens Bioelectron 86:664–670. https://doi.org/10.1016/j.bios.2016.07.055
Ghosh T, Sarkar P, Turner APF (2015) A novel third generation uric acid biosensor using uricase electro-activated with ferrocene on a Nafion coated glassy carbon electrode. Bioelectrochemistry 102:1–9. https://doi.org/10.1016/j.bioelechem.2014.11.001
Howell WM (2006) Detection of DNA hybridization using induced fluorescence resonance energy transfer. Methods Mol Biol 335:33–41. https://doi.org/10.1385/1-59745-069-3:33
Jin D, Seo M-H, Huy BT, Pham Q-T, Conte ML, Thangadurai D, Lee Y-I (2016) Quantitative determination of uric acid using CdTe nanoparticles as fluorescence probes. Biosens Bioelectron 77:359–365. https://doi.org/10.1016/j.bios.2015.09.057
Jindal K, Tomar M, Gupta V (2013) Nitrogen-doped zinc oxide thin films biosensor for determination of uric acid. Analyst 138(15):4353–4362. https://doi.org/10.1039/c3an36695b
Kubista M, Andrade JM, Bengtsson M, Forootan A, Jonak J, Lind K, Sindelka R, Sjoback R, Sjogreen B, Strombom L, Stahlberg A, Zoric N (2006) The real-time polymerase chain reaction. Mol Asp Med 27(2–3):95–125. https://doi.org/10.1016/j.mam.2005.12.007
Li S, Zhou L, Yao Y, Fan K, Li Z, Zhang L, Wang W, Yang K (2016) A platform for the development of novel biosensors by configuring allosteric transcription factor recognition with amplified luminescent proximity homogeneous assays. Chem Commun (Camb) 53(1):99–102. https://doi.org/10.1039/c6cc07244e
Libis V, Delepine B, Faulon JL (2016) Sensing new chemicals with bacterial transcription factors. Curr Opin Microbiol 33:105–112. https://doi.org/10.1016/j.mib.2016.07.006
Liu Y, Li H, Guo B, Wei L, Chen B, Zhang Y (2017) Gold nanoclusters as switch-off fluorescent probe for detection of uric acid based on the inner filter effect of hydrogen peroxide-mediated enlargement of gold nanoparticles. Biosens Bioelectron 91:734–740. https://doi.org/10.1016/j.bios.2017.01.020
Morley AA (2014) Digital PCR: a brief history. Biomol Detect Quantif 1(1):1–2. https://doi.org/10.1016/j.bdq.2014.06.001
Perez-Ruiz F, Dalbeth N, Bardin T (2015) A review of uric acid, crystal deposition disease, and gout. Adv Ther 32(1):31–41. https://doi.org/10.1007/s12325-014-0175-z
Pingoud A, Wilson GG, Wende W (2014) Type II restriction endonucleases—a historical perspective and more. Nucleic Acids Res 42(12):7489–7527. https://doi.org/10.1093/nar/gku447
Rock KL, Kataoka H, Lai JJ (2013) Uric acid as a danger signal in gout and its comorbidities. Nat Rev Rheumatol 9(1):13–23. https://doi.org/10.1038/nrrheum.2012.143
Saha K, Agasti SS, Kim C, Li X, Rotello VM (2012) Gold nanoparticles in chemical and biological sensing. Chem Rev 112(5):2739–2779. https://doi.org/10.1021/cr2001178
Ullman EF, Kirakossian H, Singh S, Wu ZP, Irvin BR, Pease JS, Switchenko AC, Irvine JD, Dafforn A, Skold CN, Wagner DB (1994) Luminescent oxygen channeling immunoassay: measurement of particle binding kinetics by chemiluminescence. Proc Natl Acad Sci U S A 91(12):5426–5430. https://doi.org/10.1073/pnas.91.12.5426
Wang H, Lu Q, Hou Y, Liu Y, Zhang Y (2016a) High fluorescence S, N co-doped carbon dots as an ultra-sensitive fluorescent probe for the determination of uric acid. Talanta 155:62–69. https://doi.org/10.1016/j.talanta.2016.04.020
Wang J, Chang Y, Wu WB, Zhang P, Lie SQ, Huang CZ (2016b) Label-free and selective sensing of uric acid with gold nanoclusters as optical probe. Talanta 152:314–320. https://doi.org/10.1016/j.talanta.2016.01.018
Wang W, Yang T, Li Y, Li S, Yin S, Styles K, Corre C, Yang K (2016c) Development of a synthetic oxytetracycline-inducible expression system for Streptomycetes using de novo characterized genetic parts. ACS Synth Biol 5(7):765–773. https://doi.org/10.1021/acssynbio.6b00087
Wilkinson SP, Grove A (2004) HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans. J Biol Chem 279(49):51442–51450. https://doi.org/10.1074/jbc.M405586200
Wilkinson SP, Grove A (2005) Negative cooperativity of uric acid binding to the transcriptional regulator HucR from Deinococcus radiodurans. J Mol Biol 350(4):617–630. https://doi.org/10.1016/j.jmb.2005.05.027
Xiang Y, Lu Y (2011) Using personal glucose meters and functional DNA sensors to quantify a variety of analytical targets. Nat Chem 3(9):697–703. https://doi.org/10.1038/nchem.1092
Zhang X, Lowe SB, Gooding JJ (2014) Brief review of monitoring methods for loop-mediated isothermal amplification (LAMP). Biosens Bioelectron 61:491–499. https://doi.org/10.1016/j.bios.2014.05.039
Zhao Y, Chen F, Li Q, Wang L, Fan C (2015) Isothermal amplification of nucleic acids. Chem Rev 115(22):12491–12545. https://doi.org/10.1021/acs.chemrev.5b00428
Zheng J, Yang R, Shi M, Wu C, Fang X, Li Y, Li J, Tan W (2015) Rationally designed molecular beacons for bioanalytical and biomedical applications. Chem Soc Rev 44(10):3036–3055. https://doi.org/10.1039/c5cs00020c
Zuo Y, Yang Y, Zhu Z, He W, Aydin Z (2011) Determination of uric acid and creatinine in human urine using hydrophilic interaction chromatography. Talanta 83(5):1707–1710. https://doi.org/10.1016/j.talanta.2010.11.073
Acknowledgments
We dedicate this paper to and in memory of our beloved friend, supervisor and colleague, Prof. Keqian Yang, who devoted his life to Streptomyces physiology, antibiotic biosynthesis, and molecular regulation.
Funding
This work was supported by grants from the National Natural Science Foundation of China (31320103911, 31430002, 31770055, 31570031, and 31772242), the Youth Innovation Promotion Association of CAS (2016087), the International Partnership Program of Chinses Academy of Science (153211KYSB20170014), and the Fundamental Research Funds for the Central Universities (22221818014).
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Yao, Y., Li, S., Cao, J. et al. A novel signal transduction system for development of uric acid biosensors. Appl Microbiol Biotechnol 102, 7489–7497 (2018). https://doi.org/10.1007/s00253-018-9056-8
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DOI: https://doi.org/10.1007/s00253-018-9056-8