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Bacterial community shift along with the changes in operational conditions in a membrane-aerated biofilm reactor

  • Environmental biotechnology
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Abstract

Membrane-aerated biofilm reactor (MABR) is a promising wastewater treatment process. Although bacteria inhabiting the MABR biofilm are important in wastewater treatment, the community composition and its correlation with operating conditions were less clear. A laboratory-scale MABR was designed to investigate the shift of bacterial community through a complete operational process by pyrosequencing the bacterial 16S rRNA genes. From around 19,000 sequences, 175 bacterial genera were retrieved, mainly belonging to Betaproteobacteria, Gammaproteobacteria, Alphaproteobacteria, Bacteroidetes, and Actinobacteria. A large number of unclassified bacterial sequences were also detected in the biofilm, suggesting a wide variety of uncharacterized species in MABR. Redundancy analysis (RDA) revealed that influent chemical oxygen demand (COD), NH4-N, and NaHCO3 concentrations could exert distinct influences on the composition of the bacterial community. The influent COD and NaHCO3 concentrations stimulated proliferation of denitrification-related species such as Dokdonella, Azospira, Hydrogenophaga, Rhodocyclaceae, and Thauera, while inhibiting the growth of Acidovorax and Sinobacteraceae. Some denitrifying Thermomonas spp. tended to survive in NH4-N-rich environments, while Flavobacterium preferred to inhabit NH4-N-poor or COD-rich environments. Conversely, the influent NH4-N and NaHCO3, to some extent, appeared to be the growth-promoting factors for nitrifying bacteria. Furthermore, the presence of potential aerobic denitrifiers such as Comamonas, Enterobacter, and Aeromonas indicated that MABR could have the capability of simultaneous aerobic and anoxic denitrification particularly during treatment of low-ammonia nitrogen sewage.

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References

  • Adrados B, Sánchez O, Arias C, Becares E, Garrido L, Mas J, Brix H, Morató J (2014) Microbial communities from different types of natural wastewater treatment systems: vertical and horizontal flow constructed wetlands and biofilters. Water Res 55:304–312

    Article  CAS  PubMed  Google Scholar 

  • Ahn J, Schroeder S, Beer M, McIlroy S, Bayly RC, May JW, Vasiliadis G, Seviour RJ (2007) Ecology of the microbial community removing phosphate from wastewater under continuously aerobic conditions in a sequencing batch reactor. Appl Environ Microbiol 73:2257–2270

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Alain K, Tindall BJ, Intertaglia L, Catala P, Lebaron P (2008) Hellea balneolensis gen. nov., sp. nov., a prosthecate alphaproteobacterium from the Mediterranean Sea. Int J Syst Evol Microbiol 58:2511–2519

    Article  CAS  PubMed  Google Scholar 

  • Bock E, Schmidt I, Stüven R, Zart D (1995) Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donors and nitrite as electron acceptor. Arch Microbiol 163:16–20

    Article  CAS  Google Scholar 

  • Brindle K, Stephenson T (1996) The application of membrane biological reactors for the treatment of wastewaters. Biotechnol Bioeng 49:601–610

    Article  CAS  PubMed  Google Scholar 

  • Brindle K, Stephenson T, Semmens MJ (1998) Nitrification and oxygen utilisation in a membrane aeration bioreactor. J Memb Sci 144:197–209

    Article  CAS  Google Scholar 

  • Carter JP, Hsaio Y, Spiro S, Richardson DJ (1995) Soil and sediment bacteria capable of aerobic nitrate respiration. Appl Environ Microbiol 61:2852–2858

    PubMed Central  CAS  PubMed  Google Scholar 

  • Casey E, Glennon B, Hamer G (1999) Review of membrane aerated biofilm reactors. Resour Conserv Recycl 27:203–215

    Article  Google Scholar 

  • Cole AC, Shanahan JW, Semmens MJ, LaPara TM (2002) Preliminary studies on the microbial community structure of membrane-aerated biofilms treating municipal wastewater. Desalination 146:421–426

    Article  CAS  Google Scholar 

  • Cole AC, Semmens MJ, LaPara TM (2004) Stratification of activity and bacterial community structure in biofilms grown on membranes transferring oxygen. Appl Environ Microbiol 70:1982–1989

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Downing LS, Nerenberg R (2008a) Effect of bulk liquid BOD concentration on activity and microbial community structure of a nitrifying, membrane-aerated biofilm. Appl Microbiol Biotechnol 81:153–162

    Article  CAS  PubMed  Google Scholar 

  • Downing LS, Nerenberg R (2008b) Effect of oxygen gradients on the activity and microbial community structure of a nitrifying, membrane-aerated biofilm. Biotechnol Bioeng 101:1193–1204

    Article  CAS  PubMed  Google Scholar 

  • Fahrbach M, Kuever J, Remesch M, Huber BE, Kämpfer P, Dott W, Hollender J (2008) Steroidobacter denitrificans gen. nov., sp. nov., a steroidal hormone-degrading gammaproteobacterium. Int J Syst Evol Microbiol 58:2215–2223

    Article  CAS  PubMed  Google Scholar 

  • Fesefeldt A, Kloos K, Bothe H, Lemmer H, Gliesche C (1998) Distribution of denitrification and nitrogen fixation genes in Hyphomicrobium spp. and other budding bacteria. Can J Microbiol 44:181–186

    Article  CAS  Google Scholar 

  • Garcia SL, Jangid K, Whitman WB, Das K (2011) Transition of microbial communities during the adaption to anaerobic digestion of carrot waste. Bioresour Technol 102:7249–7256

    Article  CAS  PubMed  Google Scholar 

  • Ginige MP, Keller J, Blackall LL (2005) Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography. Appl Environ Microbiol 71:8683–8691

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Guo P, Wang BZ, Hang BJ, Li L, Li SP, He J (2010) Sphingobium faniae sp. nov., a pyrethroid-degrading bacterium isolated from activated sludge treating wastewater from pyrethroid manufacture. Int J Syst Evol Microbiol 60:408–412

    Article  CAS  PubMed  Google Scholar 

  • Hibiya K, Terada A, Tsuneda S, Hirata A (2003) Simultaneous nitrification and denitrification by controlling vertical and horizontal microenvironment in a membrane-aerated biofilm reactor. J Biotechnol 100:23–32

    Article  CAS  PubMed  Google Scholar 

  • Hoshino T, Terahara T, Tsuneda S, Hirata A, Inamori Y (2005) Molecular analysis of microbial population transition associated with the start of denitrification in a wastewater treatment process. J Appl Microbiol 99:1165–1175

    Article  CAS  PubMed  Google Scholar 

  • Hou F, Li B, Xing M, Wang Q, Hu L, Wang S (2013) Surface modification of PVDF hollow fiber membrane and its application in membrane aerated biofilm reactor (MABR). Bioresour Technol 140:1–9

    Article  CAS  PubMed  Google Scholar 

  • Humphries J, Ashe AM, Smiley J, Johnston C (2005) Microbial community structure and trichloroethylene degradation in groundwater. Can J Microbiol 51:433–439

    Article  CAS  PubMed  Google Scholar 

  • Jetten MS, Op den Camp H, Kuenen G, Strous M, Krieg N, Staley J, Brown D, Hedlung B, Paster B, Ward N (2010) Order II. “Candidatus Brocadiales” ord. nov. Bergey’s Manua Syst Bacteriol 4:918–925

    Google Scholar 

  • Kandeler E, Deiglmayr K, Tscherko D, Bru D, Philippot L (2006) Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl Environ Microbiol 72:5957–5962

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Khan ST, Horiba Y, Yamamoto M, Hiraishi A (2002) Members of the family Comamonadaceae as primary poly (3-hydroxybutyrate-co-3-hydroxyvalerate)-degrading denitrifiers in activated sludge as revealed by a polyphasic approach. Appl Environ Microbiol 68:3206–3214

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Kim BC, Kim S, Shin T, Kim H, Sang BI (2013) Comparison of the bacterial communities in anaerobic, anoxic, and oxic chambers of a pilot A2O process using pyrosequencing analysis. Curr Microbiol 66:555–565

    Article  CAS  PubMed  Google Scholar 

  • Landes N, Morse A, Jackson WA (2013) Including nitrite as an intermediate in simultaneous nitrification/denitrification membrane-aerated biofilm reactor models. Environ Eng Sci 30:606–616

    Article  CAS  Google Scholar 

  • LaPara TM, Cole AC, Shanahan JW, Semmens MJ (2006) The effects of organic carbon, ammoniacal-nitrogen, and oxygen partial pressure on the stratification of membrane-aerated biofilms. J Ind Microbiol Biotechnol 33:315–323

    Article  CAS  PubMed  Google Scholar 

  • Lim JH, Baek SH, Lee ST (2009) Ferruginibacter alkalilentus gen. nov., sp. nov. and Ferruginibacter lapsinanis sp. nov., novel members of the family ‘Chitinophagaceae’in the phylum Bacteroidetes, isolated from freshwater sediment. Int J Syst Evol Microbiol 59:2394–2399

    Article  CAS  PubMed  Google Scholar 

  • Liu H, Yang F, Shi S, Liu X (2010) Effect of substrate COD/N ratio on performance and microbial community structure of a membrane aerated biofilm reactor. J Environ Sci 22:540–546

    Article  CAS  Google Scholar 

  • Lopes AR, Manaia CM, Nunes OC (2014) Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing. FEMS Microbiol Ecol 87:650–663

    Article  CAS  PubMed  Google Scholar 

  • Loy A, Daims H, Wagner M (2002) Activated sludge: molecular techniques for determining community composition. The encyclopedia of environmental microbiology. Wiley, New York, pp 26–43

    Google Scholar 

  • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y-J, Chen Z (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376–380

    PubMed Central  CAS  PubMed  Google Scholar 

  • Mechichi T, Stackebrandt E, Gad’on N, Fuchs G (2002) Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov. Arch Microbiol 178:26–35

    Article  CAS  PubMed  Google Scholar 

  • Mergaert J, Cnockaert MC, Swings J (2003) Thermomonas fusca sp. nov. and Thermomonas brevis sp. nov., two mesophilic species isolated from a denitrification reactor with poly (ε-caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas. Int J Syst Evol Microbiol 53:1961–1966

    Article  CAS  PubMed  Google Scholar 

  • Miller TR, Colquhoun DR, Halden RU (2010) Identification of wastewater bacteria involved in the degradation of triclocarban and its non-chlorinated congener. J Hazard Mater 183:766–772

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Morgan-Sagastume F, Nielsen JL, Nielsen PH (2008) Substrate-dependent denitrification of abundant probe-defined denitrifying bacteria in activated sludge. FEMS Microbiol Ecol 66:447–461

    Article  CAS  PubMed  Google Scholar 

  • Öpik M, Metsis M, Daniell T, Zobel M, Moora M (2009) Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytol 184:424–437

    Article  PubMed  Google Scholar 

  • Osaka T, Shirotani K, Yoshie S, Tsuneda S (2008) Effects of carbon source on denitrification efficiency and microbial community structure in a saline wastewater treatment process. Water Res 42:3709–3718

    Article  CAS  PubMed  Google Scholar 

  • Patureau D, Bernet N, Moletta R (1997) Combined nitrification and denitrification in a single aerated reactor using the aerobic denitrifier Commonas sp. strain SGLY2. Water Res 31:1363–1370

    Article  CAS  Google Scholar 

  • Patureau D, Zumstein E, Delgenes J, Moletta R (2000) Aerobic denitrifiers isolated from diverse natural and managed ecosystems. Microb Ecol 39:145–152

    Article  CAS  PubMed  Google Scholar 

  • Pikuta EV, Hoover RB, Marsic D, Whitman WB, Lupa B, Tang J, Krader P (2009) Proteocatella sphenisci gen. nov., sp. nov., a psychrotolerant, spore-forming anaerobe isolated from penguin guano. Int J Syst Evol Microbiol 59:2302–2307

    Article  CAS  PubMed  Google Scholar 

  • Qing Y, Liu XH, Peng CY, Wang SY, Peng YZ (2009) N2O production during nitrogen removal via nitrite from domestic wastewater: main sources and control method. Environ Sci Technol 43:9400–9406

    Article  Google Scholar 

  • Reinhold-Hurek B, Hurek T (2006) The genera Azoarcus, Azovibrio, Azospira and Azonexus: the prokaryotes. Springer, pp 873-891

  • Ren L, Ahn Y, Logan BE (2014) A two-stage microbial fuel cell and anaerobic fluidized bed membrane bioreactor (MFC-AFMBR) system for effective domestic wastewater treatment. Environ Sci Technol 48:4199–4206

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Rotthauwe JH, Witzel KP, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63:4704–4712

    PubMed Central  CAS  PubMed  Google Scholar 

  • Semmens MJ, Dahm K, Shanahan J, Christianson A (2003) COD and nitrogen removal by biofilms growing on gas permeable membranes. Water Res 37:4343–4350

    Article  CAS  PubMed  Google Scholar 

  • Shintani T, Liu WT, Hanada S, Kamagata Y, Miyaoka S, Suzuki T, Nakamura K (2000) Micropruina glycogenica gen. nov., sp. nov., a new Gram-positive glycogen-accumulating bacterium isolated from activated sludge. Int J Syst Evol Microbiol 50:201–207

    Article  CAS  PubMed  Google Scholar 

  • Syron E, Casey E (2008) Membrane-aerated biofilms for high-rate biotreatment: performance appraisal, engineering principles, scale-up, and development requirements. Environ Sci Technol 42:1833–1844

    Article  CAS  PubMed  Google Scholar 

  • Tang YQ, Shigematsu T, Morimura S, Kida K (2007) Effect of dilution rate on the microbial structure of a mesophilic butyrate-degrading methanogenic community during continuous cultivation. Appl Microbiol Biotechnol 75:451–465

    Article  CAS  PubMed  Google Scholar 

  • Terada A, Hibiya K, Nagai J, Tsuneda S, Hirata A (2003) Nitrogen removal characteristics and biofilm analysis of a membrane-aerated biofilm reactor applicable to high-strength nitrogenous wastewater treatment. J Biosci Bioeng 95:170–178

    Article  CAS  PubMed  Google Scholar 

  • Tice H, Mayilraj S, Sims D, Lapidus A, Nolan M, Lucas S, Del Rio TG, Copeland A, Cheng J-F, Meincke L (2010) Complete genome sequence of Nakamurella multipartita type strain (Y-104T). Stand Genomic Sci 2:168

    Article  PubMed Central  PubMed  Google Scholar 

  • Wagner M, Loy A, Nogueira R, Purkhold U, Lee N, Daims H (2002) Microbial community composition and function in wastewater treatment plants. Antonie Van Leeuwenhoek 81:665–680

    Article  CAS  PubMed  Google Scholar 

  • Wei X, Li BA, Zhao S, Qiang CC, Zhang HY, Wang SC (2012a) COD and nitrogen removal in facilitated transfer membrane-aerated biofilm reactor (FT-MABR). J Memb Sci 389:257–264

    Article  CAS  Google Scholar 

  • Wei X, Li BA, Zhao S, Wang L, Zhang HY, Li C, Wang SC (2012b) Mixed pharmaceutical wastewater treatment by integrated membrane-aerated biofilm reactor (MABR) system–a pilot-scale study. Bioresour Technol 122:189–195

    Article  CAS  PubMed  Google Scholar 

  • Wilkinson J (1959) The problem of energy-storage compounds in bacteria. Exp Cell Res 7:111–130

    Article  Google Scholar 

  • Yamagiwa K, Ohkawa A, Hirasa O (1994) Simultaneous organic carbon removal and nitrification by biofilm formed on oxygen enrichment membrane. J Chem Eng Jpn 27:638–643

    Article  CAS  Google Scholar 

  • Yang Y, Quensen J, Mathieu J, Wang Q, Wang J, Li M, Tiedje JM, Alvarez PJ (2014) Pyrosequencing reveals higher impact of silver nanoparticles than Ag+ on the microbial community structure of activated sludge. Water Res 48:317–325

    Article  CAS  PubMed  Google Scholar 

  • Yoon DN, Park SJ, Kim SJ, Jeon CO, Chae JC, Rhee SK (2010) Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge. J Microbiol 48:275–283

    Article  CAS  PubMed  Google Scholar 

  • Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, Nakamura K (2003) Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, polyphosphate-accumulating microorganism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol 53:1155–1163

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

We thank Yue-Qin Tang and Xing-Jian Xu for the assistance with sequence analysis. This study was supported by the International S&T Cooperation Program of China (No. S2011ZR0434 and 2011DFA90400) and the National High Technology Research and Development Program of China (2012AA02A703).

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The authors declare that they have no conflict of interest.

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Correspondence to Bao-An Li or Xiao-Lei Wu.

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Tian, HL., Zhao, JY., Zhang, HY. et al. Bacterial community shift along with the changes in operational conditions in a membrane-aerated biofilm reactor. Appl Microbiol Biotechnol 99, 3279–3290 (2015). https://doi.org/10.1007/s00253-014-6204-7

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  • DOI: https://doi.org/10.1007/s00253-014-6204-7

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