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The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters

  • Applied Genetics and Molecular Biotechnology
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Abstract

Streptomyces are bacteria of industrial interest whose genome contains more than 73% of bases GC. In order to define, in these GC-rich bacteria, specific sequence features of strong promoters, a library of synthetic promoters of various sequence composition was constructed in Streptomyces. To do so, the sequences located upstream, between and downstream of the −35 and −10 consensus promoter sequences were completely randomized and some variability was introduced in the −35 (position 6) and −10 (positions 3, 4 and 5) hexamers recognized by the major vegetative sigma factor HrdB. The synthetic promoters were cloned into the promoter-probe plasmid pIJ487 just upstream of the promoter-less aphII gene that confers resistance to neomycin. This synthetic promoter library was transformed into Streptomyces lividans, and the resulting transformants were screened for their ability to grow in the presence of different concentrations of neomycin (20, 50, and 100 μg ml−1). Promoter strengths varied up to 12-fold, in small increments of activity increase, as determined by reverse transcriptase-PCR. This collection of promoters of various strengths can be useful for the fine-tuning of gene expression in genetic engineering projects. Thirty-eight promoters were sequenced, and the sequences of the 14 weakest and 14 strongest promoters were compared using the WebLogo software with small sample correction. This comparison revealed that the −10 box, the −10 extended motif as well as the spacer of the strong Streptomyces promoters are more G rich than those of the weak promoters.

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Acknowledgements

This work was supported by the European program ACTINOGEN (http://www.swan.ac.uk/ils/Research/BioMed/ActinoGen/), the Centre National de la Recherche Scientifique (http://www.cnrs.fr/), the University Paris Sud 11 (http://www.u-psud.fr), and the Pôle de Recherche et d'Enseignement supérieur UniverSud Paris (http://www.universud-paris.fr).

The authors wish to thank Guislaine Refregier and Barry Holland for stimulating discussions, and we are most grateful to Jeffrey Mellin for correction of the manuscript.

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Authors and Affiliations

  1. Institut de Génétique et Microbiologie, UMR8621 CNRS Université Paris Sud, 91405, Orsay, France

    Nicolas Seghezzi & Marie-Joëlle Virolle

  2. Laboratoire de Recherche en Informatique, UMR8623 CNRS Université Paris Sud, 91405, Orsay, France

    Patrick Amar

  3. Section of Molecular Microbiology, BioCentrum-DTU, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark

    Brian Koebmann & Peter R. Jensen

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  1. Nicolas Seghezzi
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Correspondence to Marie-Joëlle Virolle.

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Seghezzi, N., Amar, P., Koebmann, B. et al. The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters. Appl Microbiol Biotechnol 90, 615–623 (2011). https://doi.org/10.1007/s00253-010-3018-0

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  • DOI: https://doi.org/10.1007/s00253-010-3018-0

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