Abstract
Integrated biosystem is becoming a major aspect of wastewater management practice. Microbial communities in piggery wastewater sampled from anaerobic (thermophilic and mesophilic) and aerobic digesters (algal tanks) during waste remediation were analyzed by culture-independent techniques based on polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE). The use of Muyzer's 314F-GC, 518R bacterial primers, and archaeal A934F, 1309R primers followed by partial 16s rDNA sequence analysis of the main bands from DGGE revealed the presence of unknown and as yet uncultured microorganisms but also showed functional and ecologically significant denitrifying, acetogenic bacteria along with autotrophic, hydrogenotrophic, and acetoclastic methanogen archaea. Thermophilic digesters were dominated by γ-Proteobacteria, Methanothermobacter sp., while mesophilic digesters showed dominance by Firmicutes, uncultured bacteria, Methanosarcina, and Methanoculleus genera. Under aerobic conditions within algal tanks, pH rose from 7.17 to 9.32, with a significant decrease in total ammonia nitrogen, chemical oxygen demand, and soluble phosphorus levels. PCR-DGGE proved a useful tool for investigating the dynamics of microbial community in the bio-processing of piggery wastewater. Knowledge of the microbial communities involved in digestion of piggery wastewater will allow optimization of integrated biosystem by removing the main pollutants like inorganic ammonium-nitrogen, phosphorus, and pathogens from intensive farming system.
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References
Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143–169
Ball AS, Pretty JN, Mahmud R, Adetutu E (2007) Methods in Environmental Forensics, Boca Raton, pp 195-218
Banhazi T, Glatz P, Cargill C, Ru Y (2000) Integrated farming systems can improve sustainability of pig and poultry farming and reduce environmental pollution problems. In: Kumar MS (ed) National workshop on wastewater treatment and integrated aquaculture production, 17–19 September 1999. South Australian Research and Development Institute, West Beach, Adelaide, South Australia, pp 160–166
Begon M, Harper JL, Townsend CR (1990) Ecology: individuals, populations and communities, 2nd edn. Blackwell Scientific Publications, Cambridge, p 945
Blotevogel KH, Gahl-JanBen R, Jannsen S, Fischer U, Pilz F, Auling G, Macario AJL, Tindall BJ (1992) Isolation and characterization of a novel mesophilic, fresh-water methanogen from river sediment Methanoculleus oldenburgensis sp. Arch Microbiol 157:54–59
Bryant MP, Boone DR (1987) Emended description of strain MST (DSM 800T), the type strain of Methanosarcina barkeri. Int J Syst Bacteriol 37:169–170
Chikh G, Pourquie J, Kaiser P, Davila AM (1997) Characterization of the bacterial flora isolated from a pilot-scale lagoon processing swine manure. Can J Microbiol 43:1079–1083
Clesceri LS, Greenberg AE, Eaton AD, Rice EW (2005) Standard Methods for the Examination of Water and Wastewater, 21st edn, American Public Health Association (APHA)
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM (2005) The ribosomal database project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucl Acids Res 33 (data-base issue) D294-D296
Connaughton S, Collins G, O'Flaherty V (2006) Development of microbial community structure and activity in a high-rate anaerobic bioreactor at 18 °C. Water Res 40:1009–1017
Department of Climate Change and the Department of Resources, Energy and Tourism (2008) Methane to markets partnership agriculture taskforce, animal waste management country specific profile, Australia
Dilly O, Bloem J, Vos A, Munch JC (2004) Bacterial diversity in agricultural soils during litter composition. Appl Environ Microbiol 70:468–474
Head IM, Saunders JR, Pickup RW (1998) Microbial evolution, diversity and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms. Microbiol Ecol 35:1–21
Hori T, Haruta S, Ueno Y, Ishii M, Igarashi Y (2006) Dynamic transition of a methanogenic population in resoponse to the concentration of volatile fatty acids in a thermophilic anaerobic digester. Appl Environ Microbiol 72:1623–1630
Iannotti EL, Fischer JR, Sievers DM (1982) Characterization of bacteria from a swine manure digester. Appl Environ Microbiol 43:136–143
Karakashev D, Batstone DJ, Angelidaki I (2005) Influence of environmental conditions on methanogenic compositions in anaerobic biogas reators. Appl Environ Microbiol 71:331–338
Krebs CJ (1999) Similarity coefficients and cluster analysis. Ecol Method, 2nd edn. Benjamin Cummings, Menlo Park, p 470
Kumar M, Clarke S, Sierp M (2000) Linkage between wastewater treatment and aquaculture; initiatives by the South Australian Research and Development Institute (SARDI). In: Kumar MS (ed) National workshop on wastewater treatment and integrated aquaculture production, 17–19 September 1999. South Australian Research and Development Institute, West Beach, Adelaide, South Australia, pp 153–159
Kumar MS (2005) Integrated biosystem subprogram: commercial scale integrated biosystem for organic waste and wastewater treatment for the livestock and food processing industries. Aquaculture Program Research Highlights- 2005, http://www.sardi.sa.gov.au/pages/fisheries/aqua/aqua_proghilights_2005.htm:sectID=241&tempID=1. Accessed 15 Aug 2007
Kumar MS, Garman D (2005) Fish food from wastewater. ECOS 35:126
LaPara TM, Nakatsu CH, Pantea L, Alleman JE (2000) Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl Environ Microbiol 66:3951–3959
Leser TL, Linderrona RH, Jensen TK, Jensen BB, Moller K (2000) Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae. Appl Environ Microbiol 66:3290–3296
Leung K, Topp E (2001) Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol Ecol 38:169–177
Leven L, Eriksson ARB, Schnurer A (2007) Effect of process temperature on bacterial and archaeal community in two methanogenic bioreactors treating organic household waste. FEMS Microbiol Ecol 59:683–693
Mawdsley JL, Bardgett RD, Merry RJ, Pain BF, Theodorou MK (1995) Pathogens in livestock waste, their potential for movement through soil and environmental pollution. Appl Soil Ecol 2:1–15
McKew BA, Coulon F, Osborn AM, McGenity TJ, Timmis KN (2007) Effects of temperature and biostimulation on oil- degrading microbial communities in temperate estuarine waters. Environ Microbiol 9:177–186
Mladenovska Z, Hartmann H, KvistT Sales-Cruz M, Gani R, Ahring BK (2006) Thermal pretreatment of the solid fraction of manure:impact on the biogas reactor performance and microbial community. Water Sci Tech 53:59–67
Muyzer G, de Waal EC, Uitterlinden A (1993) Profiling of complex microbial populations using denaturing gradient gel electrophoresis analysis of polymerase chain reaction- amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695–700
Nakatsu CH, Torsvik V, Ovreas L (2000) Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Sci Soc Am J 64:1382–1388
Paccard E, Christen R, Libert MF, Besnainou B, Moletta R (1995) Isolation and properties of a high-rate denitrifying bacterium: Pseudomonas halodenitrificans, sp. Nov. R. Christen, CNRS and Univ. Paris 6, Station Zoologique, Observatoire Oceanologique, F- 06230 Villefranche sur Mer, France
Pryde SE, Richardson AJ, Stewart CS, Flint HJ (1999) Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig. Appl Environ Microbiol 65:5372–5377
Roest K, Heilig H-GHJ, Smidt H, Vos W-M, Stams A-JM, Akkermans A-DL (2005) Community analysis of a full-scale anaerobic treating paper mill wastewater. Syst Appl Microbiol 28:175–185
Rowan AK, Snape JR, Fearnside D, Barer MR, Curtis TP, Head IM (2003) Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different design treating identical wastewater. FEMS Microbiol Ecol 43:195–206
Salanitro JP, Blake IG, Muirhead PA (1977) Isolation and identifcation of fecal bacteria from adult swine. Appl Environ Microbiol 33:79–84
Sasaki K, Haruta S, Tatara M, Yamazawa A, Ueno Y, Ishii M, Igarashi Y (2006) Microbial community in methanogenic packed-bed reactor successfully operating at short hydraulic retention time. J Biosci Bioeng 101:271–273
Sasaki K, Haruta S, Ueno Y, Ishii M, Igarashi Y (2007) Microbial population in the biomass adhering to supporting material in a packed-bed reactor degrading organic solid waste. Appl Microbiol Biotechnol 75:941–952
Shannon C, Weaver W (1949) The mathematical theory of communication. University of Illinois Press, Urbana
Shigematsu T, Tang YQ, Kawaguchi H, Ninomiya K, Kijima J, Kobayashi T, Morimura S, Kida K (2003) Effect of dilution rate on structure of mesophilic acetate-degrading methanogenic community during continuous cultivation. J Biosci Bioeng 96:547–558
Snello-Castro RS, Godon JJ, Delgenes JP, Dabert P (2005) Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis. FEMS Microbiol Ecol 52:229–242
Sorensen T (1948) A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biologlske Skrifter 4:1
Spoelstra SF (1978) Enumeration and isolation of anaerobic microbiota of piggery wastes. Appl Environ Microbiol 35:841–846
Tang YQ, Shigematsu T, Ikbal MS, Kida K (2004) The effect of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester. Water Res 38:2537–2550
Vandamme P, Devriese LA, Haesebrouck F, Kersters K (1999) Streptococcus intestinalis and Streptococcus alactolyticus are phenotypically indistinguishable. Int J Syst Bacteriol 49:737–741
Watanabe T, Asakawa S, Nakamura A, Nagaoka K, Kimura M (2004) DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol Lett 232:153–163
Whitehead TR, Cotta MA (1999) Phylogenetic diversity of meethanogenic archaea in swine waste storage pits. FEMS Microbiol Lett 179:223–226
Wu JH, Liu WT, Tseng IC, Cheng SS (2001) Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Microbiol 147:373–382
Ye NF, Lu F, Shao LM, Gordon JJ, He PJ (2007) Bacterial community dynamics and product distribution during pH-adjusted fermentation of vegetable wastes. J Appl Microbiol 103:1055–1065
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The authors thank the members of South Australian Research and Development Institute (SARDI) and Biological Sciences, Flinders University for assistance in sample collection and for providing constructive comments.
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Patil, S.S., Kumar, M.S. & Ball, A.S. Microbial community dynamics in anaerobic bioreactors and algal tanks treating piggery wastewater. Appl Microbiol Biotechnol 87, 353–363 (2010). https://doi.org/10.1007/s00253-010-2539-x
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DOI: https://doi.org/10.1007/s00253-010-2539-x