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Long serial analysis of gene expression for transcriptome profiling during the initiation of ligninolytic enzymes production in Phanerochaete chrysosporium

  • Genomics and Proteomics
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Abstract

To analyze the transcriptome profile during the initiation of manganese peroxidase (MnP) and lignin peroxidase (LiP) production in Phanerochaete chrysosporium, we constructed long serial analysis of gene expression (LongSAGE) libraries. A total of 13,666 tags (the number of cumulative counted tags) that included 6,945 unique tags (the number of distinct tags) were isolated from the day-3 culture, which just started the enzymes production and was 24 h after veratryl alcohol addition and oxygen-purge into the culture (day-2 culture). A total of 12,402 tags that included 6,396 unique tags were isolated from the day-2 culture, in which the activity of enzymes is not detected. The comparison of the two libraries suggested that 38 genes showed significant (p ≤ 0.01) fourfold or greater upregulation; this included the MnP gene (mnp2, mnp3) and LiP H8 gene. On the other hand, 43 genes showed significant (p ≤ 0.01) fourfold or greater downregulation. This LongSAGE analysis found many new candidate genes regulating the enzymes production.

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Acknowledgement

We are grateful to Dr. J. Gaskell and Dr. D. Cullen for providing P. chrysosporium strain RP78. The sequence data used for annotation were produced by the US Department of Energy Joint Genome Institute http://www.jgi.doe.gov/. This work was supported in part by Grants-in-Aid for Young Scientist (B) from the Ministry of Education, Culture, Sports, Science and Technology, Japan (to T.I.).

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Authors and Affiliations

  1. Department of Environmental Science, The University of Shiga Prefecture, 2500 Hassaka-cho, Hikone, Shiga, 522-8533, Japan

    Masahiko Minami, Orie Kureha, Kazumi Suzuki & Toshikazu Irie

  2. Shiga Prefecture Agricultural Research Center, 516 Dainaka, Azuchi, Shiga, 521-1301, Japan

    Mari Mori

  3. Gifu Prefectural Research Institute for Forests, 1128-1, Sodai, Mino, Gifu, 501-3714, Japan

    Hisatoshi Kamitsuji

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  1. Masahiko Minami
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  2. Orie Kureha
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  3. Mari Mori
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  4. Hisatoshi Kamitsuji
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  5. Kazumi Suzuki
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  6. Toshikazu Irie
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Correspondence to Toshikazu Irie.

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Minami, M., Kureha, O., Mori, M. et al. Long serial analysis of gene expression for transcriptome profiling during the initiation of ligninolytic enzymes production in Phanerochaete chrysosporium . Appl Microbiol Biotechnol 75, 609–618 (2007). https://doi.org/10.1007/s00253-007-0850-y

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  • DOI: https://doi.org/10.1007/s00253-007-0850-y

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