Skip to main content
Log in

Development and applications of real-time PCR standards for GMO quantification based on tandem-marker plasmids

  • Original Paper
  • Published:
European Food Research and Technology Aims and scope Submit manuscript

An Erratum to this article was published on 19 October 2005

Abstract

The need to comply with mandatory thresholds introduced for the labeling of GM food and feed by recent European Regulations is increasing the interest for reliable standards for GMO quantification. Certified reference materials (CRMs) for the different GMO lines are an essential element to calibrate measurement systems adopted to quantify GM ingredients. Unfortunately, conventional CRMs are affected not only by their high production costs but also by time consuming production and certification procedures. At the moment CRMs are available only for few of the GMOs authorized in Europe. In addition, latest developments in European legislation makes conceivable that the number of different authorized GM lines to be analysed will increase significantly, raising the need for additional CRMs. In the field of GMO detection and quantification, plasmids have been demonstrated to represent a cheap and reliable alternative to conventional CRMs. Here we describe the production of tandem-marker plasmids containing simultaneously specific target sequences for the GMO of interest and a species-specific reference marker sequence in a 1:1 ratio have been developed and used as real-time PCR standards. Strengths and weaknesses of these novel standards are discussed in detail.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. The European Parliament and The Council (2001) Directive 2001/18/EC of the European Parliament and of the Council of 12 march 2001 on the deliberate release into the environment of genetically modified organisms and repealing council directive 90/220/EEC (14/04/2001). Off J Eur Communities L106:1–38

    Google Scholar 

  2. The European Parliament and The Council (2003) Regulation (EC) No 1829/2003 of the European Parliament and of the Council of 22 September 2003 on genetically modified food and feed (18/10/2003). Off J Eur Communities L268:1–23

    Google Scholar 

  3. The European Parliament and The Council (2003) Regulation (EC) No 1830/2003 of the European Parliament and of the Council of 22 September 2003 concerning the traceability and labelling of genetically modified organisms and the traceability of food and feed products produced from genetically modified organisms and amending Directive 2001/18/EC (18/10/2003). Off J Eur Communities L268:24–28

    Google Scholar 

  4. The European Commission (2000) Commission regulation (EC) No 49/2000 of 10 January 2000 amending council regulation (EC) No 1139/98 concerning the compulsory indication on the labelling of certain foodstuffs produced from genetically modified organisms of particulars other than those provided for in directive 79/112/EEC (11/01/2000). Off J Eur Communities L6:13–14

    Google Scholar 

  5. Weighardt F (2003) Quantitative PCR for the detection of GMOs. In: Querci M, Jermini M, Van den Eede G (eds) The analysis of food samples for the presence of genetically modified organisms. Special publication No.I.03.114. European commission DG-JRC, pp 10/1–10/20

  6. Lie YS, Petropoulos CJ (1998) Curr Opin Biotechnol 9:43–48

    Article  CAS  PubMed  Google Scholar 

  7. Weighardt F, Barbati C, Paoletti C, Querci M, Kay S, De Beuckeleer M, Van den Eede G (2004) J AOAC Int 87:1342–1355

    Article  CAS  PubMed  Google Scholar 

  8. Trapmann S, Schimmel H, Kramer G, Van den Eede G, Pauwels J (2002) J AOAC Int 85:775–779

    Article  CAS  PubMed  Google Scholar 

  9. Trapmann S, Catalani P, Conneely P, Corbisier P, Gancberg D, Hannes E, Guern L, Kramer GN et al. (2002) The certification of reference materials of dry-mixed soya powder with different mass fractions of roundup ready soya. Certified reference materials IRMM-410S. (http://www.irmm.jrc.be/rm/cert-reports/IRMM-410s_report.pdf) European Commission, DG-JRC, IRMM

  10. Kuribara H, Shindo Y, Matsuoka K, Takubo T, Futo S, Aoki N, Hirao T, Akiyama H, Goda Y, Toyoda M, Hino A (2002) J AOAC Int 85:1077–1089

    Article  CAS  PubMed  Google Scholar 

  11. Shindo Y, Kuribara H, Matsuoka T, Futo S, Sawada C, Shono J, Akiyama H, Goda Y, Toyoda M, Hino A (2002) J AOAC Int 85:1119–1126

    Article  CAS  PubMed  Google Scholar 

  12. Taverniers I, Windels P, Van Bockstaele E, De Loose M (2001) Eur Food Res Technol 213:417–424

    Article  CAS  Google Scholar 

  13. The Commission of European Communities (1998) Commission Decision No 98/293/EC of 22 April 1998 concerning the placing on the market of genetically modified maize (Zea mays L. T25), pursuant to Council Directive 90/220/EEC (05/05/1998). Off J Eur Communities L131:30–31

    Google Scholar 

  14. The European Council (1990) Council Directive No 90/220/EEC of 23 April 1990 on the deliberate release into the environment of genetically modified organisms (8/5/1990). Off J Eur Communities L117:241–262

    Google Scholar 

  15. The Commission of European Communities (1998) Commission Decision No 98/292/EC of 22 April 1998 concerning the placing on the market of genetically modified maize (Zea mays L. line Bt-11), pursuant to Council Directive 90/220/EEC (05/05/1998). OffJ Eur Communities L131:28–29

    Google Scholar 

  16. The Commission of European Communities (1998) Commission Decision No 98/294/EC of 22 April 1998 concerning the placing on the market of genetically modified maize (Zea mays L. line MON 810), pursuant to Council Directive 90/220/EEC (05/05/1998). Off J Eur Communities L131:33

    Google Scholar 

  17. Hernandez M, Pla M, Esteve T, Prat S, Puigdomenech P, Ferrando A (2003) Transgenic Res 12:179–189

    Article  CAS  PubMed  Google Scholar 

  18. Dellaporta SL, Wood J, Hicks JB (1985) Maize DNA miniprep. In: Messing Malberg J, Sussex I (eds) Molecular biology of plants, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA, pp 36–37

    Google Scholar 

  19. Somma M (2003) Extraction and purification of DNA. In: Querci M, Jermini M, Van den Eede G (eds) The analysis of food samples for the presence of genetically modified organisms. Special publication No.I.03.114. European Commission DG-JRC, pp 4/13–4/16

  20. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning—A laboratory manual vol.1. 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

    Google Scholar 

  21. Haugland RP (2002) In: The handbook of fluorescent probes and research products, 9th edn. Molecular Probes Inc., Eugene, OR (USA), pp 365–348 http://www.probes.com

    Google Scholar 

  22. Bennett MD, Leitch IJ. Plant DNA C-values Database of The Royal Botanic Garden, Kew, UK http://www.rbgkew.org.uk/cval/exhibition/html/homepage.html

  23. Trifa Y, Zhang D (2004) J Agr Food Chem 52:1044–1048

    Article  CAS  Google Scholar 

  24. Anderson E (1944) Ann Mo Bot Gard 31:355–361

    Article  Google Scholar 

  25. Lane Rayburn A, Wetzel JB (2002) Cytometry 49:36–41

    Article  PubMed  Google Scholar 

  26. Fu H, Dooner HK (2002) Proc Nat Acad Sci USA 99:9573–9578

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Gregory TR (2004) Gene 324:15–34

    Article  CAS  PubMed  Google Scholar 

  28. Zhang L, Kosakovssky S, Gaut BG (2001) J Mol Evol 52:144–156

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

E. M. and C. B. did all the cloning and real-time PCR laboratory work; F. W. ideated and developed the technique, the working strategy, elaborated data and wrote the manuscript. M. Q. provided as laboratory supervisor all the scientific and logistical support needed for the experiments and G. V.d.E. is the head of the Biotechnology and GMOs Unit of the JRC. Mr. M. Maretti was helpful in his lab technician duties. Finally, the authors whish to thank Dr. S. Langrell who provided a critical reading of the manuscript

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Maddalena Querci.

Additional information

An Erratum for this chapter can be found at http://dx.doi.org/10.1007/s00217-005-0148-1

Rights and permissions

Reprints and permissions

About this article

Cite this article

Mattarucchi, E., Weighardt, F., Barbati, C. et al. Development and applications of real-time PCR standards for GMO quantification based on tandem-marker plasmids. Eur Food Res Technol 221, 511–519 (2005). https://doi.org/10.1007/s00217-005-1168-6

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00217-005-1168-6

Keywords

Navigation