Abstract
The phosphatidylinositol (PtdIns) family of lipids plays important roles in cell differentiation, proliferation, and migration. Abnormal expression, mutation, or regulation of their metabolic enzymes has been associated with various human diseases such as cancer, diabetes, and bipolar disorder. Recently, fluorescent derivatives have increasingly been used as chemical probes to monitor either lipid localization or enzymatic activity. However, the requirements of a good probe have not been well defined, particularly modifications on the diacylglycerol side chain partly due to challenges in generating PtdIns lipids. We have synthesized a series of fluorescent PtdIns(4,5)P2 (PIP2) and PtdIns (PI) derivatives with various lengths of side chains and tested their capacity as substrates for PI3KIα and PI4KIIα, respectively. Both capillary electrophoresis and thin-layer chromatography were used to analyze enzymatic reactions. For both enzymes, the fluorescent probe with a longer side chain functions as a better substrate than that with a shorter chain and works well in the presence of the endogenous lipid, highlighting the importance of hydrophobicity of side chains in fluorescent phosphoinositide reporters. This comparison is consistent with their interactions with lipid vesicles, suggesting that the binding of a fluorescent lipid with liposome serves as a standard for assessing its utility as a chemical probe for the corresponding endogenous lipid. These findings are likely applicable to other lipid enzymes where the catalysis takes place at the lipid-water interface.
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References
Balla T. Phosphoinositides: tiny lipids with giant impact on cell regulation. Physiol Rev. 2013;93:1019–137.
Skwarek LC, Boulianne GL. Great expectations for PIP: phosphoinositides as regulators of signaling during development and disease. Dev Cell. 2009;16:12–20.
Vicinanza M, D'Angelo G, Di Campli A, De Matteis MA. Phosphoinositides as regulators of membrane trafficking in health and disease. Cell Mol Life Sci. 2008;65:2833–41.
Di Paolo G, De Camilli P. Phosphoinositides in cell regulation and membrane dynamics. Nature. 2006;443:651–7.
Vicinanza M, D'Angelo G, Di Campli A, De Matteis MA. Function and dysfunction of the PI system in membrane trafficking. EMBO J. 2008;27:2457–70.
Downes CP, Gray A, Lucocq JM. Probing phosphoinositide functions in signaling and membrane trafficking. Trends Cell Biol. 2005;15:259–68.
Weber G. Down-regulation of increased signal transduction capacity in human cancer cells. Adv Enzym Regul. 2005;45:37–51.
Tronchere H, Laporte J, Pendaries C, Chaussade C, Liaubet L, Pirola L, et al. Production of phosphatidylinositol 5-phosphate by the phosphoinositide 3-phosphatase myotubularin in mammalian cells. J Biol Chem. 2004;279:7304–12.
Takasuga S, Sasaki T. Phosphatidylinositol-3,5-bisphosphate: metabolism and physiological functions. J Biochem. 2013;154:211–8.
Ferguson CJ, Lenk GM, Meisler MH. PtdIns(3,5)P2 and autophagy in mouse models of neurodegeneration. Autophagy. 2009;6:170–1.
Network CGAR. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature. 2008;455:1061–8.
Taylor BS, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver BS, et al. Integrative genomic profiling of human prostate cancer. Cancer Cell. 2010;18:11–22.
Suwa A, Kurama T, Shimokawa T. SHIP2 and its involvement in various diseases. Expert Opin Ther Targets. 2010;14:727–37.
Shepard CR, Kassis J, Whaley DL, Kim HG, Wells A. PLC-g contributes to metastasis of in situ-occurring mammary and prostate tumors. Oncogene. 2007;26:3020–6.
Bertagnolo V, Benedusi M, Brugnoli F, Lanuti P, Marchisio M, Querzoli P, et al. Phospholipase C-b2 promotes mitosis and migration of human breast cancer-derived cells. Carcinogenesis. 2007;28:1638–45.
Sala G, Dituri F, Raimondi C, Previdi S, Maffucci T, Mazzoletti M, et al. Phospholipase C-g1 is required for metastasis development and progression. Cancer Res. 2008;68:10187–96.
Shi TJ, Liu SX, Hammarberg H, Watanabe M, Xu ZQ, Hokfelt T. Phospholipase C-b3 in mouse and human dorsal root ganglia and spinal cord is a possible target for treatment of neuropathic pain. Proc Natl Acad Sci U S A. 2008;105:20004–8.
Rusten TE, Stenmark H. Analyzing phosphoinositides and their interacting proteins. Nat Methods. 2006;3:251–8.
Idevall-Hagren O, De Camilli P. Detection and manipulation of phosphoinositides. Biochim Biophys Acta. 2015;1851:736–45.
Hokin LE, Hokin MR. Phosphoinositides and protein secretion in pancreas slices. J Biol Chem. 1958;233:805–10.
Whitman M, Downes CP, Keeler M, Keller T, Cantley L. Type-I phosphatidylinositol kinase makes a novel inositol phospholipid, phosphatidylinositol-3-phosphate. Nature. 1988;332:644–6.
Wenk MR, Lucast L, Di Paolo G, Romanelli AJ, Suchy SF, Nussbaum RL, et al. Phosphoinositide profiling in complex lipid mixtures using electrospray ionization mass spectrometry. Nat Biotechnol. 2003;21:813–7.
Ogiso H, Taguchi R. Reversed-phase LC/MS method for polyphosphoinositide analyses: changes in molecular species levels during epidermal growth factor activation in A431 cells. Anal Chem. 2008;80:9226–32.
Pettitt TR, Dove SK, Lubben A, Calaminus SD, Wakelam MJ. Analysis of intact phosphoinositides in biological samples. J Lipid Res. 2006;47:1588–96.
Balla T. Inositol-lipid binding motifs: signal integrators through protein-lipid and protein-protein interactions. J Cell Sci. 2005;118:2093–104.
Hardie RC, Liu CH, Randall AS, Sengupta S. In vivo tracking of phosphoinositides in Drosophila photoreceptors. J Cell Sci. 2015;128:4328–40.
Weber S, Wagner M, Hilbi H. Live-cell imaging of phosphoinositide dynamics and membrane architecture during Legionella infection. MBio. 2014;5:e00839–13.
Yoon Y, Lee PJ, Kurilova S, Cho W. In situ quantitative imaging of cellular lipids using molecular sensors. Nat Chem. 2011;3:868–74.
Liu SL, Sheng R, O'Connor MJ, Cui Y, Yoon Y, Kurilova S, et al. Simultaneous in situ quantification of two cellular lipid pools using orthogonal fluorescent sensors. Angew Chem Int Ed Engl. 2014;53:14387–91.
Huang W, Jiang D, Wang X, Wang K, Sims CE, Allbritton NL, et al. Kinetic analysis of PI3K reactions with fluorescent PIP2 derivatives. Anal Bioanal Chem. 2011;401:1881–8.
Wright BD, Simpson C, Stashko M, Kireev D, Hull-Ryde EA, Zylka MJ, et al. Development of a high-throughput screening assay to identify inhibitors of the lipid kinase PIP5K1C. J Biomol Screen. 2015;20:655–62.
Jiang DC, Sims CE, Allbritton NL. Single-cell analysis of phosphoinositide 3-kinase and phosphatase and tensin homolog activation. Faraday Discuss. 2011;149:187–200.
Wang K, Jiang D, Sims CE, Allbritton NL. Separation of fluorescently labeled phosphoinositides and sphingolipids by capillary electrophoresis. J Chromatogr B Analyt Technol Biomed Life Sci. 2012;907:79–86.
Meredith GD, Sims CE, Soughayer JS, Allbritton NL. Measurement of kinase activation in single mammalian cells. Nat Biotechnol. 2000;18:309–12.
Barnett SF, Ledder LM, Stirdivant SM, Ahern J, Conroy RR, Heimbrook DC. Interfacial catalysis by phosphoinositide 3′-hydroxykinase. Biochemistry. 1995;34:14254–62.
Martin SF, Pitzer GE. Solution conformations of short-chain phosphatidylcholine. Substrates of the phosphatidylcholine-preferring PLC of Bacillus cereus. Biochim Biophys Acta. 2000;1464:104–12.
Kim K, McCully ME, Bhattacharya N, Butler B, Sept D, Cooper JA. Structure/function analysis of the interaction of phosphatidylinositol 4,5-bisphosphate with actin-capping protein: implications for how capping protein binds the actin filament. J Biol Chem. 2007;282:5871–9.
Klink TA, Kleman-Leyer KM, Kopp A, Westermeyer TA, Lowery RG. Evaluating PI3 kinase isoforms using TranscreenerTM ADP assays. J Biomol Screen. 2008;13:476–85.
Carpenter CL, Duckworth BC, Auger KR, Cohen B, Schaffhausen BS, Cantley LC. Purification and characterization of phosphoinositide 3-kinase from rat-liver. J Biol Chem. 1990;265:19704–11.
Proctor A, Herrera-Loeza SG, Wang Q, Lawrence DS, Yeh JJ, Allbritton NL. Measurement of protein kinase B activity in single primary human pancreatic cancer cells. Anal Chem. 2014;86:4573–80.
Chen J, Profit AA, Prestwich GD. Synthesis of photoactivatable 1,2-O-diacyl-sn-glycerol derivatives of 1-L-phosphatidyl-D-myo-inositol 4,5-bisphosphate (PtdInsP(2)) and 3,4,5-trisphosphate (PtdInsP(3)). J Org Chem. 1996;61:6305–12.
Kubiak RJ, Bruzik KS. Comprehensive and uniform synthesis of all naturally occurring phosphorylated phosphatidylinositols. J Org Chem. 2003;68:960–8.
Ozaki S, DeWald DB, Shope JC, Chen J, Prestwich GD. Intracellular delivery of phosphoinositides and inositol phosphates using polyamine carriers. Proc Natl Acad Sci U S A. 2000;97:11286–91.
Bigay J, Casella JF, Drin G, Mesmin B, Antonny B. ArfGAP1 responds to membrane curvature through the folding of a lipid packing sensor motif. EMBO J. 2005;24:2244–53.
Acknowledgements
We thank the National Institutes of Health (GM086558 to Q.Z., CA177993 to N.A.), the American Foundation for Pharmaceutical Education (fellowship to J.W.), and the Eshelman Institute for Innovation (award to W.H.) for funding this work.
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Waybright, J., Huang, W., Proctor, A. et al. Required hydrophobicity of fluorescent reporters for phosphatidylinositol family of lipid enzymes. Anal Bioanal Chem 409, 6781–6789 (2017). https://doi.org/10.1007/s00216-017-0633-y
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DOI: https://doi.org/10.1007/s00216-017-0633-y