Skip to main content
Log in

Oxaloacetate decarboxylase of Archaeoglobus fulgidus: cloning of genes and expression in Escherichia coli

  • Short Communication
  • Published:
Archives of Microbiology Aims and scope Submit manuscript

Abstract

Archaeoglobus fulgidus harbors three consecutive and one distantly located gene with similarity to the oxaloacetate decarboxylase Na+ pump of Klebsiella pneumoniae (KpOadGAB). The water-soluble carboxyltransferase (AfOadA) and the biotin protein (AfOadC) were readily synthesized in Escherichia coli, but the membrane-bound subunits AfOadB and AfOadG were not. AfOadA was affinity purified from inclusion bodies after refolding and AfOadC was affinity purified from the cytosol. Isolated AfOadA catalyzed the carboxyltransfer from [4-14C]-oxaloacetate to the prosthetic biotin group of AfOadC or the corresponding biotin domain of KpOadA. Conversely, the carboxyltransferase domain of KpOadA exhibited catalytic activity not only with its pertinent biotin domain but also with AfOadC.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Abbreviations

Af:

Archaeoglobus fulgidus

AHT:

Anhydrotetracycline

DTT:

Dithiothreitol

IPTG:

Isopropyl-β-d-thiogalactopyranoside

Kp:

Klebsiella pneumoniae

LDAO:

N,N-dimethyldodecylamine-N-oxide

MBP:

Maltose binding protein

OAD:

Oxaloacetate decarboxylase

OadA:

Oxaloacetate decarboxylase α-subunit

OadB:

Oxaloacetate decarboxylase β-subunit

OadC:

Oxaloacetate decarboxylase δ-subunit

OadG:

Oxaloacetate decarboxylase γ-subunit

PPS:

3-(1-pyridino)-1-propanesulfate

References

  • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1989) Short protocols in molecular biology, 1st edn. Greene Publishing Associates/Wiley-Interscience, New York

    Google Scholar 

  • Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296

    CAS  PubMed  Google Scholar 

  • Bott M (1997) Anaerobic citrate metabolism and its regulation in enterobacteria. Arch Microbiol 167:78–88

    Article  CAS  Google Scholar 

  • Bott M, Meyer M, Dimroth P (1995) Regulation of anaerobic citrate metabolism in Klebsiella pneumoniae. Mol Microbiol 18:533–546

    Article  CAS  PubMed  Google Scholar 

  • Bott M, Pfister K, Burda P, Kalbermatter O, Woelke G, Dimroth P (1997) Methylmalonyl-CoA decarboxylase from Propionigenium modestum: cloning and sequencing of the structural genes and purification of the enzyme complex. Eur J Biochem 250:590–599

    Article  CAS  PubMed  Google Scholar 

  • Buckel W (2001) Sodium ion-translocating decarboxylases. Biochim Biophys Acta 1505:15–27

    Article  CAS  PubMed  Google Scholar 

  • Busch W, Saier MH Jr (2003) The IUBMB-endorsed transporter classification system. Methods Mol Biol 227:21–36

    Article  CAS  PubMed  Google Scholar 

  • Di Berardino M, Dimroth P (1995) Synthesis of the oxaloacetate decarboxylase Na+ pump and its individual subunits in Escherichia coli and analysis of their function. Eur J Biochem 231:790–801

    PubMed  Google Scholar 

  • Di Berardino M, Dimroth P (1996) Aspartate 203 of the oxaloacetate decarboxylase β subunit catalyzes both the chemical and vectorial reaction of the Na+ pump. EMBO J 15:1842–1849

    PubMed  Google Scholar 

  • Dimroth P (1986) Preparation, characterization, and reconstitution of oxaloacetate decarboxylase from Klebsiella aerogenes, a sodium pump. Methods Enzymol 125:530–540

    Article  CAS  PubMed  Google Scholar 

  • Dimroth P (1997) Primary sodium ion translocating enzymes. Biochim Biophys Acta 1318:11–51

    Article  CAS  PubMed  Google Scholar 

  • Eichler J (2000) Archaeal protein translocation crossing membranes in the third domain of life. Eur J Biochem 267:3402–3412

    Article  CAS  PubMed  Google Scholar 

  • Fekkes P, Driessen AJ (1999) Protein targeting to the bacterial cytoplasmic membrane. Microbiol Mol Biol Rev 63:161–173

    CAS  PubMed  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Harrison RG (2000) Expression of soluble heterologous proteins via fusion with NusA protein. Innovations 11:4–7

    Google Scholar 

  • Huder JB, Dimroth P (1993) Sequence of the sodium ion pump methylmalonyl-CoA decarboxylase from Veillonella parvula. J Biol Chem 268:24564–24571

    CAS  PubMed  Google Scholar 

  • Jockel P, Schmid M, Steuber J, Dimroth P (2000a) A molecular coupling mechanism for the oxaloacetate decarboxylase Na+ pump as inferred from mutational analysis. Biochemistry 39:2307–2315

    Article  CAS  PubMed  Google Scholar 

  • Jockel P, Schmid M, Choinowski T, Dimroth P (2000b) Essential role of tyrosine 229 of the oxaloacetate decarboxylase β-subunit in the energy coupling mechanism of the Na+ pump. Biochemistry 39:4320–4326

    Article  CAS  PubMed  Google Scholar 

  • Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA et al (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390:364–370

    Article  PubMed  Google Scholar 

  • Lilie H, Schwarz E, Rudolph R (1998) Advances in refolding of proteins produced in E. coli. Curr Opin Biotechnol 9:497–501

    Article  CAS  PubMed  Google Scholar 

  • Miroux B, Walker JE (1996) Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J Mol Biol 260:289–298

    Article  CAS  PubMed  Google Scholar 

  • Nagamori S, Smirnova IN, Kaback HR (2004) Role of YidC in folding of polytopic membrane proteins. J Cell Biol 165:53–62

    Article  CAS  PubMed  Google Scholar 

  • Pohlschroder M, Dilks K, Hand NJ, Rose RW (2004) Translocation of proteins across archaeal cytoplasmic membranes. FEMS Microbiol Rev 28:3–24

    Article  CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    CAS  PubMed  Google Scholar 

  • Schmid M, Vorburger T, Pos KM, Dimroth P (2002a) Role of conserved residues within helices IV and VIII of the oxaloacetate decarboxylase β subunit in the energy coupling mechanism of the Na+ pump. Eur J Biochem 269:2997–3004

    Article  CAS  PubMed  Google Scholar 

  • Schmid M, Wild MR, Dahinden P, Dimroth P (2002b) Subunit γ of the oxaloacetate decarboxylase Na+ pump: interaction with other subunits/domains of the complex and binding site for the Zn2+ metal ion. Biochemistry 41:1285–1292

    Article  CAS  PubMed  Google Scholar 

  • Skerra A, Schmidt TG (2000) Use of the Strep-Tag and streptavidin for detection and purification of recombinant proteins. Methods Enzymol 326:271–304

    Article  CAS  PubMed  Google Scholar 

  • Wendt KS, Schall I, Huber R, Buckel W, Jacob U (2003) Crystal structure of the carboxyltransferase subunit of the bacterial sodium ion pump glutaconyl-coenzyme A decarboxylase. EMBO J 22:3493–3502

    Article  CAS  PubMed  Google Scholar 

  • Wild MR, Pos KM, Dimroth P (2003) Site-directed sulfhydryl labeling of the oxaloacetate decarboxylase Na+ pump of Klebsiella pneumoniae: helix VIII comprises a portion of the sodium ion channel. Biochemistry 42:11615–11624

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by Swiss National Science Foundation. We thank Prof. Dr M. Thomm and Dr Harald Huber (Archaeenzentrum Universität Regensburg) for their generous gift of large amounts of A. fulgidus cells.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Peter Dimroth.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Dahinden, P., Pos, K.M., Taralczak, M. et al. Oxaloacetate decarboxylase of Archaeoglobus fulgidus: cloning of genes and expression in Escherichia coli. Arch Microbiol 182, 414–420 (2004). https://doi.org/10.1007/s00203-004-0706-0

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00203-004-0706-0

Keywords

Navigation