Skip to main content
Log in

Tagging QTLs for late blight resistance and plant maturity from diploid wild relatives in a cultivated potato (Solanum tuberosum) background

  • Original Paper
  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

Phytophthora infestans causes an economically important disease of potato called late blight. The epidemic is controlled chemically but resistant potatoes can become an environment-friendly and financially justified alternative solution. The use of diploid Solanum tuberosum derived from European tetraploid cultivars enabled the introgression of novel genes encoding foliage resistance and tuber resistance from other species into the modern cultivated potato gene pool. This study evaluated the resistance of the obtained hybrids, its quality, expression in leaflets and tubers and its relation to the length of vegetation period. We also identified genetic loci involved in late blight resistance and the length of vegetation period. A family of 156 individuals segregating for resistance to late blight was assessed by three laboratory methods: detached leaflet, tuber slice and whole tuber test, repeatedly over 5 years. Length of vegetation period was estimated by a field test over 2 years. The phenotypic distributions of all traits were close to normal. Using sequence-specific PCR markers of known chromosomal position on the potato genetic map, six quantitative trait loci (QTLs) for resistance and length of vegetation period were identified. The most significant and robust QTL were located on chromosomes III (explaining 17.3% of variance observed in whole tuber tests), IV (15.5% of variance observed in slice tests), X (15.6% of variance observed in leaflet tests) and V (19.9% of variance observed in length of vegetation period). Genetic characterization of these novel resistance sources can be valuable for potato breeders and the knowledge that the most prominent QTLs for resistance and vegetation period length do not overlap in this material is promising with respect to breeding early potatoes resistant to P. infestans.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Allefs JJHM, Muskens MWM, van der Vossen EAG (2005) Breeding for foliage blight resistance in the genomics era. In: Haverkort AJ, Striuk PC (eds) Potato in progress. Science meets practice. Academic, Wageningen, pp 255–267

  • Bendahmane A, Kanyuka K, Baulcombe DC (1997) High-resolution genetical and physical mapping of the Rx gene for extreme resistance to potato virus X in tetraploid potato. Theor Appl Genet 95:153–162

    Article  CAS  Google Scholar 

  • Beketova MP, Drobyazina PE, Khavkin EE (2006) The R1 gene for late blight resistance in early and late maturing potato cultivars. Russ J Plant Physiol 53:384–389

    Article  CAS  Google Scholar 

  • Bisognin DA, Douches DS, Buszka L, Bryan G, Wang D (2005) Mapping late blight resistance in Solanum microdontum Bitter. Crop Sci 45:340–345

    Article  CAS  Google Scholar 

  • Bormann CA, Rickert AM, Castillo Ruiz RA, Paal J, Lübeck J, Strahwald J, Buhr K, Gebhardt C (2004) Tagging quantitative trait loci for maturity-corrected late blight resistance in tetraploid potato with PCR-based candidate gene markers. Mol Plant Microbe Interact 17:1126–1138

    PubMed  CAS  Google Scholar 

  • Bradshaw JE, Pande B, Bryan GJ, Hackett CA, McLean K, Stewart HE, Waugh R (2004) Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum). Genetics 168:983–995

    Article  PubMed  CAS  Google Scholar 

  • Collins A, Milbourne D, Ramsay L, Meyer R, Chatot-Balandras C, Oberhagemann P, De Jong W, Gebhardt C, Bonnel E, Waugh R (1999) QTL for field resistance to late blight in potato are strongly correlated with maturity and vigour. Mol Breed 5:387–398

    Article  CAS  Google Scholar 

  • Costanzo S, Šimko I, Christ BJ, Haynes KG (2005) QTL analysis of late blight resistance in a diploid potato family of Solanum phureja × S. stenotomum. Theor Appl Genet 111:609–617

    Article  PubMed  CAS  Google Scholar 

  • Flier WG, Turkensteen LJ, van den Bosch GMB, Verijken PFG, Mulder A (2001) Differential interaction of potato cultivars with different levels of blight resistance. Plant Pathol 50:292–301

    Article  Google Scholar 

  • Gebhardt C (2004) Potato genetics: maps and more. In: Lörtz H, Wenzel G (eds) Molecular marker systems in plant breeding and crop improvement. Biotechnology in agriculture and forestry. Springer, Heidelberg, pp 215–227

    Google Scholar 

  • Gebhardt C, Valkonen JPT (2001) Organization of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol 39:79–102

    Article  PubMed  CAS  Google Scholar 

  • Gebhardt C, Ballvora A, Walkemeier B, Oberhagemann P, Schüler K (2004) Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with variation of resistance to late blight and maturity type. Mol Breed 13:93–102

    Article  CAS  Google Scholar 

  • Ghislain M, Trognitz B, Herrera M del R, Solis J, Casallo G, Vásquez C, Hurtado O, Castillo R, Portal R, Orillo M (2001) Genetic loci associated with field resistance to late blight in offspring of Solanum phureja and S. tuberosum grown under short-day conditions. Theor Appl Genet 103:433–442

    Article  CAS  Google Scholar 

  • Hawkes JG (1990) The potato, evolution, biodiversity and genetic resources. Belhaven Press, London

    Google Scholar 

  • Landeo JA, Gastelo M, Pinedo H, Flores F (1995) Breeding to horizontal resistance to late blight in potato free of R genes. In: Dowley LJ, Bannon E, Cooke LR, Keane T, O’Sullivan E (eds) Phytophthora infestans. Boole Press, Dublin, vol 150, pp 268–274

  • Leonards-Schippers C, Gieffers W, Schäfer-Pregl R, Ritter E, Knapp S J, Salamini F, Gebhardt C (1994) Quantitative resistance to Phytophthora infestans in potato: a case study for QTL mapping in an allogamous plant species. Genetics 137:67–77

    PubMed  CAS  Google Scholar 

  • Malcolmson JF (1969) Races of Phytophthora infestans occurring in Great Britain. Trans Br Mycol Soc 53:417–423

    Article  Google Scholar 

  • Marczewski W, Strzelczyk-Żyta D, Hennig J, Witek K, Gebhardt C (2006) Potato chromosomes IX and XI carry genes for resistance to potato virus M. Theor Appl Genet 112:1232–1238

    Article  PubMed  CAS  Google Scholar 

  • Niederhauser JS, Cervantes J, Servin L (1954) Late blight in Mexico and its implications. Phytopathology 44:406–408

    Google Scholar 

  • Niewöhner J, Salamini F, Gebhardt C (1995) Development of PCR assays diagnostic for RFLP marker alleles closely linked to alleles Gro1 and H1, conferring resistance to the root cyst nematode Globodera rostochiensis in potato. Mol Breed 1:65–78

    Article  Google Scholar 

  • Oberhagemann P, Chatot-Balandras C, Schäfer-Pregl R, Wegener D, Palomino C, Salamini F, Bonnel E, Gebhardt C (1999) A genetic analysis of quantitative resistance to late blight in potato: towards marker-assisted selection. Mol Breed 5:399–415

    Article  CAS  Google Scholar 

  • Paal J, Henselewski H, Muth J, Meksem K, Menéndez CM, Salamini F, Ballvora A, Gebhardt C (2004) Molecular cloning of the potato Gro1–4 gene conferring resistance to pathotype Ro1 of the root cyst nematode Globodera rostochiensis, based on a candidate gene approach. Plant J 38:285–297

    Article  PubMed  CAS  Google Scholar 

  • Pajerowska KM, Parker JE, Gebhardt C (2005) Potato homologues of Arabidopsis thaliana genes functional in defense signaling—identification, genetic mapping and molecular cloning. Mol Plant Microbe Interact 18:1107–1119

    PubMed  CAS  Google Scholar 

  • Park T-H, Vleeshouwers VGAA, Kim J-B, Hutten RCB, Visser RGF (2005) Dissection of foliage and tuber blight resistance in mapping populations of potato. Euphytica 143:75–83

    Article  Google Scholar 

  • Plomion C, Hurme P, Frigerio J-M, Ridolfi M, Pot D, Pionneau C, Avila C, Gallardo F, David H, Neutelings G, Campbell M, Canovas FM, Savolainen O, Bodénès C, Kremer A (1999) Developing SSCP markers in two Pinus species. Mol Breed 5:21–31

    Article  CAS  Google Scholar 

  • Ratuszniak E, Komorowska-Jędrys J (1995) Metodyka prowadzenia badań I obserwacji w doświadczeniach wstępnych z rodami hodowlanymi (odmianami) ziemniaka (instrukcja). Instytut Ziemniaka, Bonin, Poland

  • Rickert AM, Kim JH, Meyer S, Nagel A, Ballvora A, Oefner PJ, Gebhardt C (2003) First-generation SNP/InDel markers tagging loci for pathogen resistance in the potato genome. Plant Biotechnol J 1:399–410

    Article  PubMed  CAS  Google Scholar 

  • Ritter E, Gebhardt C, Salamini F (1990) Estimation of recombination frequencies and construction of RFLP linkage maps in plants from crosses between heterozygous parents. Genetics 125:645–654

    PubMed  CAS  Google Scholar 

  • Roer L, Toxopeus HJ (1961) The effect of R-genes for hypersensitivity in potato-leaves on tuber resistance to Phytophthora infestans. Euphytica 10:35–42

    Article  Google Scholar 

  • Rudkiewicz F (1985) Zaraza ziemniaka (Phytophthora infestans (Mont) de Bary). In: Gabriel W (ed) Biologia ziemniaka. Państwowe Wydawnictwa Naukowe, Warszawa, pp 381–398

    Google Scholar 

  • Sandbrink JM, Colon LT, Wolters PJCC, Stiekema W (2000) Two related genotypes of Solanum microdontum carry different segregating alleles for field resistance to Phytophthora infestans. Mol Breed 6:215–225

    Article  CAS  Google Scholar 

  • Slabaugh MB, Huestis GM, Leonard J, Holloway JL, Rosato C, Hongtrakul V, Martini N, Toepfer R, Voetz M, Schell J, Knapp SJ (1997) Sequence-based genetic markers for genes and gene families: single-strand conformational polymorphisms for the fatty acid synthesis genes of Cuphea. Theor Appl Genet 94:400–408

    Article  CAS  Google Scholar 

  • Śliwka J, Jakuczun H, Lebecka R, Marczewski W, Gebhardt, Zimnoch-Guzowska E (2006) A novel late blight resistance gene Rpi-phu1 mapped to potato chromosome IX is not related to long vegetation period. Theor Appl Genet 113:685–695

    Article  PubMed  CAS  Google Scholar 

  • Stewart HE, Bradshaw JE (2001) Assessment of the field resistance of potato genotypes with major gene resistance to late blight (Phytophthora infestans (Mont.) de Bary) using inoculum comprised of two complementary races of the fungus. Potato Res 44:41–51

    Article  Google Scholar 

  • Stewart HE, Bradshaw JE, Wastie RL (1994) Correlation between resistance to late blight in foliage and tubers in potato clones from parents of contrasting resistance. Potato Res 37:429–434

    Article  Google Scholar 

  • Stewart HE, Bradshaw JE, Pande B (2003) The effect of the presence of R-genes for resistance to late blight (Phytophthora infestans) of potato (Solanum tuberosum) on the underlying level of field resistance. Plant Pathol 52:193–198

    Article  Google Scholar 

  • Świeżyński KM (1990) Resistance to Phytophthora infestans in potato cultivars and its relation to maturity. Genet Pol 31:99–106

    Google Scholar 

  • Świeżyński KM, Zimnoch-Guzowska E (2001) Breeding potato cultivars with tubers resistant to Phytophthora infestans. Potato Res 44:97–117

    Article  Google Scholar 

  • Świeżyński KM, Sieczka MT, Sujkowski LS, Zarzycka H, Zimnoch-Guzowska E (1991) Resistance to Phytophthora infestans in potato genotypes originating from wild species. Plant Breed 107:28–38

    Article  Google Scholar 

  • Toxopeus HJ (1958) Some notes of the relations between field resistance to Phytophthora infestans in leaves and tubers and ripening time in Solanum tuberosum subsp. tuberosum. Euphytica 7:123–130

    Article  Google Scholar 

  • Toxopeus HJ (1961) On the inheritance of tuber resistance of Solanum tuberosum to Phytophthora infestans in the field. Euphytica 10:307–314

    Article  Google Scholar 

  • Umaerus V, Umaerus M (1994) Inheritance of resistance to late blight. In: Bradshaw JE, Mackay GR (eds) Potato genetics. CAB International, Wallingford, pp 319–337

    Google Scholar 

  • Van der Vossen EAG, Gros J E, Sikkema A, Muskens M, Wouters D, Wolters P, Pereira A, Allefs S (2005) The Rpi-blb2 gene from Solanum bulbocastanum is an Mi-1 gene homolog conferring broad-spectrum late blight resistance in potato. Plant J 44:208–222

    Article  PubMed  CAS  Google Scholar 

  • Visker MHPW, Keizer LCP, van Eck HJ, Jacobsen E, Colon LT, Struik PC (2003) Can the QTL for late blight resistance on potato chromosome 5 be attributed to foliage maturity type? Theor Appl Genet 106:317–325

    PubMed  CAS  Google Scholar 

  • Visker MHPW, Heilersig HJB, Kodde LP, Van de Weg WE, Voorrips RE, Struik PC, Colon LT (2005) Genetic linkage of QTLs for late blight resistance and foliage maturity type in six related potato progenies. Euphytica 143:189–199

    Article  CAS  Google Scholar 

  • Zarzycka H (2001a) Evaluation of resistance to Phytophthora infestans in detached leaflet assay. Preparation of the inoculum. Monografie i Rozprawy Naukowe IHAR, Radzików, Poland, vol 10a, pp 75–77

  • Zarzycka H (2001b) Assessment of resistance to Phytophthora infestans in tuber slices and whole tubers. Monografie i Rozprawy Naukowe IHAR, Radzików, Poland, vol 10a, pp 78–80

Download references

Acknowledgments

The authors thank Agim Ballvora, Christina Bormann, Evgeniya Ilarionova, Karolina Pajerowska and Andreas Rickert (Max-Planck Institute for Plant Breeding Research, Cologne, Germany) for providing PCR primers as well as Zygmunt Kaczmarek and Marcin Przystalski (Institute of Plant Genetics, Polish Academy of Sciences, Poznań, Poland) for performing the analysis of variance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to J. Śliwka.

Additional information

Communicated by C. Hackett.

Electronic supplementary material

Below is the link to the electronic supplementary material.

S1 (DOC 27 kb)

122_2007_546_MOESM2_ESM.doc

S2. Population 98-21. Analysis of variance for mean late blight resistance scores in leaflet, slice and whole tuber tests, repeated in two dates and five years. (DOC 49 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Śliwka, J., Jakuczun, H., Lebecka, R. et al. Tagging QTLs for late blight resistance and plant maturity from diploid wild relatives in a cultivated potato (Solanum tuberosum) background. Theor Appl Genet 115, 101–112 (2007). https://doi.org/10.1007/s00122-007-0546-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00122-007-0546-9

Keywords

Navigation