Abstract
Ligase chain reaction (LCR) was evaluated as a tool for the detection of point mutations. For the mutation studied, the specificity of the method is sufficient to detect the mutant allele in the presence of a 200-fold molar excess of the wild-type sequence. LCR was therefore employed in a genetic recombination experiment as a probe for a recessive lethal point mutation. LCR greatly facilitated the isolation of a rare recombinant originating from a crossover event in the 40 kb interval separating the lethal mutation and an enhancer trap insertion in the optomotor-blind locus. The recombinant will allow the study of gene control in situ, in a largely unperturbed regulatory environment.
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References
Ballinger DG, Benzer S (1989) Targeted gene mutations in Drosophila. Proc Natl Acad Sci USA 86:9402–9406
Barany F (1991a) Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc Natl Acad Sci USA 88:189–193
Barany F (1991b) The ligase chain reaction in a PCR world. PCR Methods Applic 1:5–16
Bellen HJ, O'Kane CJ, Wilson C, Grossniklaus U, Pearson RK, Gehring WJ (1989) P-element-mediated enhancer detection: a versatile method to study development in Drosophila. Genes Dev 3:1288–1300
Bier E, Vaessin H, Shepherd S, Lee K, McCall K, Barbel S, Ackerman L, Carretto R, Uemura T, Grell E, Jan LY, Jan YN (1989) Searching for pattern and mutation in the Drosophila genome with a P-lacZ vector. Genes Dev 3:1273–1287
Champlin DT, Frasch M, Saumweber H, Lis JT (1991) Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes Dev 5:1611–1621
Chou Q, Russell M, Birch DE, Raymond J, Bloch W (1992) Prevention of pre-PCR mis-priming and primer dimerization improves low-copy-number amplifications. Nucleic Acids Res 20:1717–1723
Chung JH, Whiteley M, Felsenfeld G (1993) A 5' element of the chicken β-globin domain serves as an insulator in human erythroid cells and protects against position effects in Drosophila. Cell 74:505–514
Freeman M, Kimmel BE, Rubin GM (1992) Identifying targets of the rough homeobox gene of Drosophila: evidence that rhomboid functions in eye development. Development 116:335–346
Haenlin M, Steller H, Pirrotta V, Mohier E (1985) A 43 kilobase cosmid P transposon rescues the fs(1)K10 morphogenetic locus and three adjacent Drosophila developmental mutants. Cell 40:827–837
Heisenberg M, Wonneberger R, Wolf R (1978) Optomotor-blind H31 — a Drosophila mutant of the lobula plate giant neurons. J Comp Physiol 124:287–296
Hooper JE, Pérez-Alonso M, Bermingham JR, Prout M, Rocklein BA, Wagenbach M, Edstrom J-E, de Frutos R, Scott MP (1992) Comparative studies of the Drosophila Antennapedia genes. Genetics 132:453–469
Jupe ER, Sinden RR, Cartwright IL (1993) Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus. EMBO J 12:1067–1075
Kaiser K, Goodwin SF (1990) “Site-selected” transposon mutagenesis of Drosophila. Proc Natl Acad Sci USA 87:1686–1690
Kitamoto T, Salvaterra PM (1993) Developmental regulatory elements in the 5' flanking DNA of the Drosophila choline acetyltransferase gene. Roux's Arch Dev Biol 202:159–169
Marsh E, Schoetllin W, Cline J, Callen W, Kretz K, Mathur E (1992) Pyrococcus furiosus DNA ligase and the ligase chain reaction. Strategies in Molecular Biology (Stratagene) 5:73–76
Martín-Bermudo MD, González F, Dominguez M, Rodríguez I, Ruiz-Gómez M, Romani S, Modolell J, Jiménez F (1993) Molecular characterization of the lethal of scute genetic function. Development 118:1003–1012
Mirkovitch J, Gasser SM, Laemmli UK (1988) Scaffold attachment of DNA loops in metaphase chromosomes. J Mol Biol 200:101–109
Muralidhar MG, Callahan CA, Thomas JB (1993) Single-minded regulation of genes in the embryonic midline of the Drosophila central nervous system. Mech Dev 41:129–138
O'Kane CJ, Gehring WJ (1987) Detection in situ of genomic regulatory elements in Drosophila. Proc Natl Acad Sci USA 84:9123–9127
Pflugfelder GO, Roth H, Poeck B, Kerscher S, Schwarz S, Jonschker B, Heisenberg M (1992a) The l(1)optomotor-blind gene of Drosophila melanogaster is a major organizer of optic lobe development: isolation and characterization of the gene. Proc Natl Acad Sci USA 89:1199–1203
Pflugfelder GO, Roth H Poeck B (1992b) A homology domain shared between Drosophila optomotor-blind and mouse Brachyury is involved in DNA binding. Biochem Biophys Res Commun 186:918–925
Poeck B (1992) Untersuchungen zur Genetik und Expression des optomotor-blind locus von Drosophila melanogaster. Thesis, University of Würzburg
Poeck B, Hofbauer A, Pflugfelder GO (1993a) Expression of the Drosophila optomotor-blind gene transcript in neuronal and glial cells of the developing nervous system. Development 117:1017–1029
Poeck B, Balles J, Pflugfelder GO (1993b) Transcript identification in the optomotor-blind locus of Drosophila melanogaster by intragenic recombination mapping and PCR-aided sequence analysis of lethal point mutations. Mol Gen Genet 238:325–332
Ramos RGP, Grimwade BG, Wharton KA, Scottgale TN, Artavanis-Tsakonas S (1989) Physical and functional definition of the Drosophila Notch locus by P element transformation. Genetics 123:337–348
Rothe M, Pehl M, Taubert H, Jäckle H (1992) Loss of gene function through rapid mitotic cycles. Nature 359:156–159
Rychlik W, Rhoads RE (1989) A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA. Nucleic Acids Res 17:8543–8551
Wagner-Bernholz JT, Wilson C, Gibson G, Schuh R, Gehring WJ (1991) Identification of target genes of the homeotic gene Antennapedia by enhancer detection. Genes Dev 5:2467–2480
Walter N (1992) The development of a new method to introduce mutations into cloned genes. Thesis, University of Zürich
Weigel D, Seifert E, Reuter D, Jäckle H (1990) Regulatory elements controlling expression of the Drosophila homeotic gene fork head. EMBO J 9:1199–1207
Zavortink M, Sakonju S (1989) The morphogenetic and regulatory functions of the Drosophila Abdominal-B gene are encoded in overlapping RNAs transcribed from separate promoters. Genes Dev 3:1969–1981
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Communicated by J. Camnos-nrtega
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Balles, J., Pflugfelder, G.O. Facilitated isolation of rare recombinants by ligase chain reaction: selection for intragenic crossover events in the Drosophila optomotor-blind gene. Molec. Gen. Genet. 245, 734–740 (1994). https://doi.org/10.1007/BF00297280
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DOI: https://doi.org/10.1007/BF00297280