Abstract
Forty loci (16 polymorphic and 24 non-polymorphic) together with 23 cosmids isolated from a chromosome 11-specific library were used to construct a detailed genetic map of 11p13-11g13. The map was constructed by using a panel of 13 somatic cell hybrids that sub-divided this region into 19 intervals, a meiotic mapping panel of 33 multiple endocrine neoplasia type 1 (MEN1) families (134 affected and 269 unaffected members) and a mitotic mapping panel that was used to identify loss of heterozygosity in 38 MENI-associated tumours. The results defined the most likely order of the 16 loci as being: 11pter-D11S871(D11S288, D11S149)-11cen-CNTF-PGA-ROM1-D11S480-PYGM-SEA-D11S913-D115970-D11S97-D11S146-INT2-D11S971-D11S533-11gter. The meiotic mapping studies indicated that the most likely location of the MEN1 gene was in the interval flanked by PYGM and D11S97, and the results of mitotic mapping suggested a possible location of the MEN1 gene telomeric to SEA. Mapping studies of the gene encoding μ-calpain (CAPN1) located CAPN1 to llg13 and in the vicinity of the MEN1 locus. However, mutational analysis studies did not detect any germ-line CAPN1 DNA sequence abnormalities in 47 unrelated MEN1 patients and the results therefore exclude CAPN1 as the MEN1 gene. The detailed genetic map that has been constructed of the 11p13-11g13 region should facilitate the construction of a physical map and the identification of candidate genes for disease loci mapped to this region.
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Aoki K, Imajoh S, Ohno S, Emori Y, Koike M, Kosaki G, Suzuki K (1986) Complete amino acid sequence of the large subunit of the low-Ca2+-requiring form of human Ca2+-activated neutral protease (μCANP) deduced from its cDNA sequence FEBS Lett 205:313–317
Barker D, Green P, Knowlton R, Schumm J, Lander E, Oliphant A, Willard H, Akots G, Brown V, Gravius T, Helms C, Nelson C, Parker C, Rediker K, Rising M, Watt D, Weiffenbach B, Donis-Keller H (1987) Genetic linkage map of human chromosome 7 with 63 DNA markers. Proc Natl Acad Sci USA 84:8006–8010
Bascom RA, García-Heras J, Hseih C-L, Gerhard DS, Jones C, Francke U, Willard HF, Ledbetter DH, McInnes RR (1992) Localization of the photoreceptor geneROM1 to human chromosome 11 and mouse chromosome 19: sublocalization to human 11 q 13 betweenPGA andPYGM. Am J Hum Genet 51:1028–1035
Benovic JL, Stone WC, Huebner K, Croce C, Caron MG, Lefkowitz RJ (1991) cDNA cloning and chromosomal localization of the human B-adrenergic receptor kinase. FEBS Lett 283:122–126
Bhattacharya S, Wilson TME, Wojciechowski AP, Volpe CP, Scott J (1991) Hypervariable polymorphism in the APOC3 gene. Nucleic Acids Res 19:4799
Bickmore WA, Sumner AT (1989) Mammalian chromosome banding — an expression of genome organisation. Trends Genet 5:144–148
Browne DL, Litt M (1992) Characterisation of (CA) n microsatellites with degenerate sequencing primers. Nucleic Acids Res 20:141
Bufton L, Mohandas TK, Magenis RE, Sheehy R, Bestwick RK, Litt M (1986) A highly polymorphic locus on chromosome 16q revealed by a probe from a chromosome-specific cosmid library. Hum Genet 74:425–431
Carillo S, Pariat M, Steff A-M, Roux P, Etienne-Julan M, Lorca T, Piechaczyk M (1994) Differential sensitivity of FOS and JUN family members to calpains. Oncogene 9:1679–1689
Compton DA, Szilak I, Cleveland DW (1992) Primary structure of NuMA, an intranuclear protein that defines a novel pathway for segregation of proteins at mitosis. J Cell Biol 116:1395–1408
Cowell JK, Wadey RB, Buckle BB, Pritchard J (1989) The aniridia-Wilms' tumour association: molecular and genetic analysis of chromosome deletions on the short arm of chromosome 11. Hum Genet 82:123–126
Craig JM, Bickmore WA (1994) The distribution of CpG islands in mammalian chromosomes. Nat Genet 7:376–381
Davies JL, Kaawaguchi Y, Bennett ST, Copeman JB, Cordell HJ, Pritchard LE, Reed PW, Gough SCL, Jenkins SC, Palmer SM, Balfour KM, Rowe BR, Farrall M, Barnett AH, Bain SC, Todd JA (1994) A genome-wide search for human type 1 diabetes susceptibility genes. Nature 371:130–136
Dowdy SF, Scanlon DJ, Fasching CL, Casey G, Stanbridge EJ (1990) Irradiation microcell-mediated chromosome transfer (XMMCT): the generation of specific chromosomal arm deletions. Genes Chromosom Cancer 2:318–327
Eubanks JH, Selleri L, Hart, R Rosette C, Evans GA (1991) Isolation, localization, and physical mapping of a highly polymorphic locus on human chromosome 11g13. Genomics 11:720–729
Friedman E, Sakaguchi K, Bale AE, Falchetti A, Streeten E, Zimering MB, Weinstein LS, McBride WO, Nakamura Y, Brandi M-L, Norton JA, Auerbach GD, Spiegel AM, Marx SJ (1989) Clonality of parathyroid tumors in familial multiple endocrine neoplasia type 1. N Engl J Med 321:213–218
Gerhard DS, Lawrence E, Wu J, Chua H, Ma N, Bland S, Jones C (1992) Isolation of 1001 new markers from human chromosome 11, excluding the region of 11p13-p15.5, and their sublocalization by a new series of radiation-reduced somatic cell hybrids. Genomics 13:1133–1142
Gillett GT, McConville CM, Byrd PJ, Stankovic T, Taylor AM, Hunt DM, West LF, Fox MF, Povey S, Benham FJ (1993) Irradiation hybrids for human chromosome 11: characterization and use for generating region-specific markers in 11g14-q23. Genomics 15:332–341
Glaser T, Housman D, Lewis WH, Gerhard D, Jones C (1989) A fine-structure deletion map of chromosome 11p: analysis of J1 series hybrids. Somat Cell Mol Genet 15:477–501
Gyapay G, Morissette J, Vignal A, Dib C, Fizames C, Millasseau P, Marc S, Bemardi G, Lathrop M, Weissenbach J (1994) The 1993–94 Généthon human genetic linkage map. Nat Genet 7:246–339
Hashimoto L, Habita C, Beressi JP, Delepine M, Besse C, Cambon-Thomsen A, Deschamps I, Rotter JI, Djoulah S, James MR, Froguel P, Weissenbach J, Lathrop GM, Julier C (1994) Genetic mapping of a susceptibility locus for insulin-dependent diabetes mellitus on chromosome 11q. Nature 371:161–164
Iwasaki H, Stewart PW, William GD, Holt MS, Steinbrueck TD, Wells Jr SA, Donis-Keller H (1992) A minisatellite and a microsatellite polymorphism within 1.5 kb at the human muscle glycogen phosphorylase (PYGM) locus can be amplified by PCR and have combined informativeness of PIC 0.95. Genomics 13: 7–15
James MR, Richard III CW, Schott J-J, Yousry C, Clark K, Bell J, Terwilliger JD, Hazan J, Dubay C, Vignal A, Agrapart M, Imai T, Nakamura Y, Polymeropoulos M, Weissenbach J, Cox DR, Lathrop GM (1994) A radiation hybrid map of 506 STS markers spanning human chromosome 11. Nat Genet 8:70–76
Janson M, Larsson C, Werelius B, Jones C, Glaser T, Nakamura Y, Jones CP, Nordenskjold M (1991) Detailed physical map of human chromosomal region 11g12-13 shows high meiotic recombination rate around the MEN1 locus. Proc Natl Acad Sci USA 88:10609–10613
Jones C, Bill J, Larizza L, Pym B, Goodfellow P, Tunnacliffe A (1984) Relationships between genes on human chromosome 11 encoding cell-surface antigens. Somat Cell Mol Genet 10:423–428
Julier C, Nakamura Y, Lathrop M, O'Connell P, Leppert M, Litt M, Mohandas T, Lalouel JM, White R (1990) A detailed genetic map of the long arm of chromosome 11. Genomics 7:335–345
Kao F-T, Jones C, Puck TT (1976) Genetics of somatic mammalian cells: genetic, immunologic, and biochemical analysis with Chinese hamster cell hybrids containing selected human chromosomes. Proc Natl Acad Sci USA 73:193–197
Kas K, Schoenmakers E, Ven W van de, Weber G, Nordenskjold M, Michiels L, Merregaert J, Larsson C (1993) Assignment of the human FAU gene to a subregion of chromosome 11g13. Genomics 17:387–392
Kimberling WJ, Möller CG, Davenport S, Priluck IA, Beighton PH, Greenberg J, Reardon W, Weston MD, Kenyon JB, Grunkemeyer JA, Pieke Dahl S, Overbeck LD, Blackwood DJ, Brower AM, Hoover DM, Rowland P, Smith RJH (1992) Linkage of Usher syndrome type 1 (USHB1) to the long arm of chromosome 11. Genomics 14:988–994
Kishimoto A, Mikawa K, Hashimoto K, Yasuda I, Tanaka S, Tominaga M, Kuroda T, Nishizuka Y (1989) Limited proteolysis of protein kinase C subspecies by calcium-dependent neutral protease (calpain) J. Biol. Chem 264:4088–4092
Krebs CJ, Horton JH, Mullins CM, Paradee WJ, Taggart RT (1993) D11S971 CATT polymorphism (RC27) located near the MEN1 locus at 11q13. Hum Mol Genet 2:825
Larsson C, Skogseid B, Öberg K, Nakamura Y, Nordenskjöld MC (1988) Multiple endocrine neoplasia type 1 gene maps to chromosome 11 and is lost in insulinoma. Nature 332:85–87
Larsson C, Shepherd J, Nakamura Y, Blomberg C, Weber G, Werelius B, Hayward N, Teh B, Tokino T, Seizinger B, Skogseid B, Öberg K, Nordenskjold M (1992) Predictive testing for multiple endocrine neoplasia type 1 using DNA polymorphisms. J Clin Invest 89:1344–1349
Lathrop GM, Lalouel JM (1984) Easy calculation of LOD scores and genetic risk on small computers. Am J Hum Genet 36:460–465
Lathrop GM, Lalouel JM, Julier C, Ott J (1984) Strategies for multilocus linkage analysis in humans. Proc Natl Acad Sci USA 81:3443–3446
Leppert M, Baird L, Anderson KL, Otterud B, Lupski JR, Lewis RA (1994) Bardet-Biedl syndrome is linked to DNA markers on chromosome 11q and is genetically heterogeneous. Nature Genetics 7:108–111
Lev AA, Rosen DR, Kos C, Clifford E, Landes G, Hauser SL, Brown Jr RH (1993) Human ciliary neurotrophic factor: localization to the proximal region of the long arm of chromosome 11 and association with CA/GT dinucleotide repeat. Genomics 16:539–541
Li Y, Müller B, Fuhrmann C, Nouhuys E van, Laqua H, Humphries P, Schwinger E, Gal A (1992) The autosomal dominant familial exudative vitreoretinopathy locus maps on 11q and is closely linked to D11S533. Am J Hum Genet 51:749–754
Lloyd SE, Pearce SHS, Fisher SE, Steinmeyer K, Schwappach B, Scheinman SJ, Harding B, Bolino A, Devoto M, Goodyer P, Rigden SPA, Wrong O, Jentsch TJ, Craig IW, Thakker RV (1996) A common molecular basis for three inherited kidney stone diseases. Nature 379:445–449
Magnusson A, Haug LS, Walaa I, Østwold AC (1993) Calcium-induced degradation of the inositol (1, 4, 5)-triphosphate receptor/Ca2+-channel. FEBS Lett 323:229–232
Moffatt MF (1993) Dinucleotide repeat polymorphism at the D11S480 locus. Hum Mol Genet 2:492
Mohandas T, Sparkes RS, Hellkuhl B, Grzeschik KH, Shapiro LJ (1980) Expression of an X-linked gene from an inactive human X chromosome in mouse-human hybrid cells: further evidence for the noninactivation of the steroid sulfatase locus in man. Proc Natl Acad Sci USA 77:6759–6763
Montandon AJ, Green PM, Gianelli F, Bentley DR (1989) Direct detection of point mutations by mismatch analysis: application to haemophilia B. Nucleic Acids Res 17:3347–3358
Nichols BE, Bascom RA, Litt M, McInnes R, Sheffield VC, Stone EM (1994) Refining the locus for Best vitelliform macular dystrophy and mutation analysis of the candidate gene ROM1. Am J Hum Genet 54:95–103
Oda A, Druker BJ, Ariyoshi H, Smith M, Salzman EW (1993) pp60src is an endogenous substrate for calpain in human blood platelets. J Biol Chem 268:12603–12608
Ohno S, Minoshima S, Kudoh J, Fukuyama R, Shimizu Y, OhmiImajoh S, Shizimu N, Suzuki K (1990) Four genes for the calpain family locate on four distinct human chromosomes. Cytogenet Cell Genet 53:225–229
Pang JT, Pook MA, Eubanks JH, Jones C, Van Heyningen V, Evans GA, Thakker RV (1992) Molecular genetic mapping of the multiple endocrine neoplasia type 1 (MEN1) locus. Henry Ford Hosp Med J 40:162–166
Park D, Jhon D-Y, Lee C-W, Ryu SH, Rhee SG (1993) Removal of the carboxyl-terminal of phospholipase C-β1 by calpain abolishes activation by Gαq. J Biol Chem 268:3710–3714
Parkinson DB, Thakker RV (1992) A donor splice site mutation in the parathyroid hormone gene is associated with autosomal recessive hypoparathyroidism. Nature Genet 1:149–152
Parkinson DB, Shaw NJ, Himsworth RL, Thakker RV (1993) Parathyroid hormone gene analysis in autosomal hypoparathyroidism using an intragenic tetranucleotide (AAAT)n polymorphism. Hum Genet 91:281–284
Pearce SHS, Trump D, Wooding C, Besser GM, Chew SL, Grant DB, Heath DA, Hughes IA, Paterson CR, Whyte MP, Thakker RV (1995) Calcium-sensing receptor mutations in familial benign hypercalcemia and neonatal hyperparathyroidism. J Clin Invest 96:2683–2692
Polymeropoulos MH, Xiao H, Rath DS, Merril CR (1990) Dinucleotide repeat polymorphism at the int-2 proto-oncogene locus (INT2). Nucleic Acids Res 18:7468
Pook MA, Thakrar R, Pottinger B, Harding B, Porteous D, Heyningen V van, Cowell J, Jones C, Povey S, Davies KE, Thakker RV (1996)EagI andNotI linking clones from human chromosomes 11 and Xp. Hum Genet 97: 742–749
Porteous DJ, Wilkinson MM, Fletcher JM, Van Heyningen V (1989) Human-mouse hybrids carrying fragments of single chromosomes selected by tumor growth. Genomics 5:680–684
Ranum LPW, Schut LJ, Lundgren JK, Off HT, Livingston DM (1994) Spinocerebellar ataxia type 5 in a family descended from the grandparents of President Lincoln maps to chromosome 11. Nat Genet 8:280–284
Richard III CW, Withers DA, Meeker TC, Maurer S, Evans GA, Myers RM, Cox DR (1991) A radiation hybrid map of the proximal long arm of human chromosome 11 containing the multiple endocrine neoplasia type 1 (MEN-1) and bcl-1 disease loci. Am J Hum Genet 49:1189–1196
Scheinman SJ, Pock MA, Wooding C, Pang JT, Frymoyer PA, Thakker RV (1993) Mapping the gene causing X-linked recessive nephrolithiasis to Xp11.22 by linkage studies. J Clin Invest 91:2351–2357
Smith RJH, Lee EC, Kimberling WJ, Daiger SP, Pelias MZ, Keats BJB, Jay M, Bird A, Reardon W, Guest M, Ayyagari R. Hejtmancik (1992) Localisation of two genes for Usher syndrome type 1 to chromosome 11. Genomics 14:995–1002.
Smith MW, Clark SP, Hutchinson JS, Wei YH, Chrukian AC, Daniels LB, Diggle KL, Gen MW, Romo AJ, Lin Y, Selleri L, McElligott DL, Evans GA (1993) A sequence-tagged site map of human chromosome 11. Genomics 17:699–725
Stone EM, Nichols BE, Streb LM, Kimura AE, Sheffield VC (1992a) Genetic linkage of vitelliform macular degeneration (Best's disease) to chromosome 11g13. Nat Genetics 1:246–250
Stone EM, Kimura AE, Folk JC, Bennett SR, Nichols BE, Streb LM, Sheffield VC (1992b) Genetic linkage of autosomal dominant neovascular inflammatory vitreoretinopathy to chromosome 11q13. Hum Mol Genet 1:685–689
Szepetowski P, Perucca-Lostanlen D, Gaudray P (1993) Mapping genes according to their amplification status in tumour cells: contribution to the map of 11q13. Genomics 16:745–750
Taggart RT, Krebs CJ, Mullins CM, Horton JH, Paradee WJ, Slusher R (1993) D11S970 CATT polymorphism (RC29) located near the MEN1 locus at 11q13. Hum Mol Genet 2:336
Thakker RV (1993) The molecular genetics of multiple endocrine neoplasia syndromes. Clin Endocrinol 38:1–14
Thakker RV, Bouloux P, Wooding C, Chotai K, Broad PM, Spurr NK, Besser GM, O'Riordan JLH (1989) Association of parathyroid tumors in multiple endocrine neoplasia type 1 with loss of alleles on chromosome 11. N Engl J Med 321:218–224
Thakker RV, Davies KE, Whyte MP, Wooding C, O'Riordan JLH (1990) Mapping the gene causing X-linked recessive idiopathic hypoparathyroidism to Xg26–Xg27 by linkage studies. J Clin Invest 86:40–45
Thakker RV, Wooding C, Pang IT, Farren B, Harding B, Anderson DC, Besser GM, Bouloux P, Brenton DP, Buchanan KD, Edwards CR, Heath DA, Jackson CE, Jansen S, Lips K, Norum RA, Sampson J, Shalet SM, Taggart RT, Tailor D, Wheeler MH, Woollard PM, Yates J (1993a) Linkage analysis of 7 polymorphic markers at chromosome 11p11.2–11g13 in 27 multiple endocrine neoplasia type 1 families. Ann Hum Genet 57:17–25
Thakker RV, Pook MA, Wooding C, Boscaro M, Scanarini M, Clayton RN (1993b) Association of somatotrophinomas with loss of alleles on chromosome 11 and with gsp mutations. J Clin Invest 91:2815–2821
Toda T, Iida A, Miwa T, Nakamura Y, Imai T (1994) Isolation and characterisation of a novel gene encoding nuclear protein at a locus (D11S636) tightly linked to multiple endocrine neoplasia type 1 (MEN1). Hum Mol Genet 3:465–470
Tokino T, Takahashi E, Mori M, Tanigami A, Glaser T, ParkJW, Jones C, Hori T, Nakamura Y (1991) Isolation and mapping of 62 new RFLP markers on human chromosome 11. Am J Hum Genet 48:258–268
Trump D, Pilia G, Dixon PH, Wooding C, Thakrar R, Leigh SEA, Nagaraja Ramaiah, Whyte MP, Schlessinger D, Thakker RV (1996) Construction of a YAC contig and an STS map spanning 3.6 megabase pairs in Xp22.1. Hum Genet 97:60–69
Weber G, Friedman E, Grimmond S, Hayward NK, Phelan C, Skogseid B, Gobl A, Zedenius J, Sandelin K, Teh BT, Carson E, White I, Öberg K, Shepherd J, Nordenskjöld M, Larsson C (1994) The phospholipase C β3 gene located in the MENI region shows loss of expression in endocrine tumours. Hum Mol Genet 3:1775–1781
Williamson R, Bowcock A, Kidd K, Pearson P, Schmidtke J, Ceverha P, Chipperfield M, Cooper DN, Coutelle C, Hewitt J, Klinger K, Langley K, Beckmann J, Tolley M, Maidak B (1991) Report for the DNA Committee and catalogues of the cloned and mapped genes, markers formulated for PCR and DNA polymorphisms. Cytogenet Cell Genet 58:1190–1832
Young RP, Sharp PA, Lynch JR, Faux JA, Lathrop GM, Cookson WOCM, Hopkin JM (1992) Conformation of genetic linkage between atopic immunoglobulin E responses and chromosome 11q13. J Med Genet 29:236–238
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Pang, J.T., Lloyd, S.E., Wooding, C. et al. Genetic mapping studies of 40 loci and 23 cosmids in chromosome 11p13-11g13, and exclusion of μ-calpain as the multiple endocrine neoplasia type 1 gene. Hum Genet 97, 732–741 (1996). https://doi.org/10.1007/BF02346182
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DOI: https://doi.org/10.1007/BF02346182