Skip to main content

Performance Analysis of Deep CNN Assisted Optimized HIV-I Protease Cleavage Site Prediction with Hybridized Technique

  • Conference paper
  • First Online:
International Conference on Communication, Computing and Electronics Systems

Part of the book series: Lecture Notes in Electrical Engineering ((LNEE,volume 733))

Abstract

In recent years, human immunodeficiency virus infection and acquired immune deficiency syndrome (HIV/AIDS) has emerged as a global health issue. The disease is caused by a virus that affects the CD4 cell in the human body that lowers the immune system in the human body. HIV-protease is the agent that replicates itself and affects the CD4 T cells in the human blood. To overcome the problem of replication, inhibitors can be analyzed and designed that can bind the active sites in the proteases. To design efficient protease inhibitors, the knowledge about the specificity of cleavage sites is essential. Several encoding techniques and classifiers have been proposed to study and analyze the active cleavage sites in proteases. This paper proposes a new model and comparatively analyses the performance of Hybridized SVM_Genetic modeling with Deep CNN assisted optimized prediction of Cleavage sites. For optimal tuning of activation functions, two metaheuristic algorithms such as moth search and dragonfly are proposed in this work. The performance of both the methodologies is compared based on different parameters such as accuracy, specificity, F1 score, sensitivity, and NPV. To authenticate the performance of the proposed model, standard data from machine learning algorithms called UCI repository is processed for experimentation. The performance measured is compared with existing available techniques for predicting cleavages.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 229.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 299.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 299.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Brik A, Wong C-H (2003) HIV-I protease: mechanism and drug discovery Org Biomol Chem 1(1):5–14

    Google Scholar 

  2. World Health Organization. http://www.who.int/gho/hiv/en/

  3. De Clercq E (2009) The history of anti retro viral: key discoveries over the past 25 years. Med Virol 19(5):287–299

    Google Scholar 

  4. Singh et al (2019) Clean: evolutionary based ensemble framework for realizing transfer learning in HIV-1 Protease cleavage sites prediction. Appl Intell 49:1260–1282

    Google Scholar 

  5. Fathi et al (2018) A genetic programming method for feature mapping to improve prediction of HIV-1 protease cleavage site. Appl soft Comput 72:56–64

    Article  Google Scholar 

  6. Singh et al (2018) Evolutionary based optimal ensemble classifiers for HIV-1 protease cleavage sites prediction. Expert Syst Appl 109:86–99. https://doi.org/10.1016/j.eswa.2018.05.003

  7. Ogul et al (2009) Variable context Markov chains for HIV protease cleavage site prediction. Bio Syst 96(3):246–250. https://doi.org/10.1016/j.biosystems.2009.03.001

  8. Singh O, Su ECY (2016) Prediction of HIV-1 protease cleavage site using a combination of sequence, structural, and physicochemical features. BMC Bioinform 17(Suppl 17):478. https://doi.org/10.1186/s12859-016-1337-6

  9. Nanni L, Lumini A (2008) Using ensemble of classifiers for predicting HIV protease cleavage sites in proteins. Amino Acids 36(3):409–416. https://doi.org/10.1007/s00726-008-0076-z(2008)

  10. Jiangning Song Hao Tan,Andrew J. Perry,Tatsuya Akutsu,Geoffrey I. Webb,James C. hisstock, Robert N. Pike.: PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites. Briefings Bioinform 20:638–658

    Google Scholar 

  11. Gai-Ge Wang (2016) Solar Moth search algorithm: a bio-inspired metaheuristic algorithm for global optimization problems. Memetic Comput 10:151–164

    Google Scholar 

  12. Li Z, Zhou Y, Zhang S, Song J (2016) Lévy-flight moth-flame algorithm for function optimization and engineering design problems. Math Probl Eng https://doi.org/10.1155/2016/1423930

  13. Mirjalili S (2016) Dragonfly algorithm: a new meta-heuristic optimization technique for solving single-objective, discrete, and multi-objective problems. Neural Comput Appl 27:1053–1073. https://doi.org/10.1007/s00521-015-1920-1

    Article  Google Scholar 

  14. Mafarja MM, Eleyan D, Jaber J, Hammouri A, Mirjalili S (2017) Binary dragonfly algorithm for feature selection. In: 2017 international conference on new trends in computing sciences (ICTCS). https://doi.org/10.1109/ictcs42043

  15. Rahamn S (2019) Dragonfly algorithm and its applications. Appl Sci Surv

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Navneet Kaur .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Kaur, N., Ghai, W. (2021). Performance Analysis of Deep CNN Assisted Optimized HIV-I Protease Cleavage Site Prediction with Hybridized Technique. In: Bindhu, V., Tavares, J.M.R.S., Boulogeorgos, AA.A., Vuppalapati, C. (eds) International Conference on Communication, Computing and Electronics Systems. Lecture Notes in Electrical Engineering, vol 733. Springer, Singapore. https://doi.org/10.1007/978-981-33-4909-4_40

Download citation

  • DOI: https://doi.org/10.1007/978-981-33-4909-4_40

  • Published:

  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-33-4908-7

  • Online ISBN: 978-981-33-4909-4

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics