Skip to main content

Graphene Oxide-triplex Structure Based DNA Nanoswitches as a Programmable Tetracycline-Responsive Fluorescent Biosensor

  • Conference paper
  • First Online:
Book cover Bio-Inspired Computing: Theories and Applications (BIC-TA 2021)

Abstract

The overuse of antibiotics will lead to the emergence of drug resistance so that many common diseases can not be effectively treated. Therefore, based on the special structure of graphene oxide (GO) and DNA triple strand, a programmable DNA nanodevice for quantitative detection of tetracycline (TC) is designed in this paper. The introduction of GO as a quencher can effectively reduce the background fluorescence and whether there is any change in the fluorescence in the auxiliary system; Stabilizing the trigger chain with three chain structure will reduce the error more likely. The feasibility analysis preliminarily confirmed the realizability of the designed model, and the optimal conditions were obtained by condition optimization, which laid the foundation for the subsequent quantitative detection of TC, while the selective experiments in different systems fully showed that the model had excellent specificity.

L. Wang and Y. Wang---These authors contributed equally to this work.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 79.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 99.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Xu, D., Xiao, Y., Pan, H., et al.: Toxic effects of tetracycline and its degradation products on freshwater green algae. Ecotoxicol. Environ. Saf. 174(6), 43–47 (2019)

    Article  Google Scholar 

  2. Daghrir, R., Drogui, P.: Tetracycline antibiotics in the environment: a review. Environ. Chem. Lett. 11(3), 209–227 (2013)

    Article  Google Scholar 

  3. Liu, X.G., Huang, D.L., Lai, C., et al.: Recent advances in sensors for tetracycline antibiotics and their applications. TrAC Trends Anal. Chem. 109(11), 260–274 (2018)

    Google Scholar 

  4. Ma, C., Liu, H.Y., Tian, T., et al.: A simple and rapid detection assay for peptides based on the specific recognition of aptamer and signal amplification of hybridization chain reaction. Biosens. Bioelectron. 83(11), 15–18 (2016)

    Article  Google Scholar 

  5. Sun, Y.L., Fan, J.F., Cui, L.Y., et al.: Fluorometric nanoprobes for simultaneous aptamer-based detection of carcinoembryonic antigen and prostate specific antigen. Microchim. Acta 186(3), 152–161 (2019)

    Article  Google Scholar 

  6. Wang, Y.H., Fang, Z.Y., Ning, G., et al.: G-quadruplex-bridged triple-helix aptamer probe strategy: a label-free chemiluminescence biosensor for ochratoxin A. Sens. Actuators, B Chem. 298(11), 126867–126874 (2019)

    Article  Google Scholar 

  7. Malhotra, B.D., Srivastava, S., Ali, M.A., et al.: Nanomaterial-based biosensors for food toxin detection. Appl. Biochem. Biotechnol. 174(3), 880–896 (2014)

    Article  Google Scholar 

  8. Liu, C., Wang, J., Zhang, X., et al.: Mercury ion fluorescence biosensor based on oligonucleotide chain. Anal. Chem. 45(2), 164–168 (2017)

    Google Scholar 

  9. Chen, J.L., Zhang, Y.Y., Cheng, M.P., et al.: Highly active G-quadruplex/hemin DNAzyme for sensitive colorimetric determination of lead (II). Microchim. Acta 186(12), 1–8 (2019)

    Google Scholar 

  10. Lin, T., Zeng, G., Shen, G., et al.: Study on a novel glucose oxidase sensor based on inhibition for the determination of mercury ions in environmental pollutants (2005)

    Google Scholar 

  11. Santiago, I.: Trends and innovations in biosensors for COVID-19 mass testing. ChemBioChem 21(20), 2880–2889 (2020)

    Article  Google Scholar 

  12. Cho, E.J., Lee, J.W., Ellington, A.D.: Applications of aptamers as sensors. Annu. Rev. Anal. Chem. 2(1), 241–264 (2009)

    Article  Google Scholar 

  13. Rajendran, M., Ellington, A.D.: Selection of fluorescent aptamer beacons that light up in the presence of zinc. Anal. Bioanal. Chem. 390(4), 1067–1075 (2008)

    Article  Google Scholar 

  14. Kim, J., Jang, D., Park, H., et al.: Functional-DNA-driven dynamic nanoconstructs for biomolecule capture and drug delivery. Adv. Mater. 30(45), 1707351–1707382 (2018)

    Article  Google Scholar 

  15. Kwon, Y.S., Raston, N.H.A., Gu, M.B.: An ultra-sensitive colorimetric detection of tetracyclines using the shortest aptamer with highly enhanced affinity. Chem. Commun. 50(1), 40–42 (2014)

    Article  Google Scholar 

  16. Barnoy, E.A., Popovtzer, R., Fixler, D.: Fluorescence for biological logic gates. J. Biophotonics 13(9), 158–172 (2020)

    Article  Google Scholar 

  17. Wang, Y.F., Zhang, Y.X., Wang, J.J., et al.: Aggregation-induced emission (AIE) fluorophores as imaging tools to trace the biological fate of nano-based drug delivery systems. Adv. Drug Delivery Rev. 143(3), 161–176 (2019)

    Google Scholar 

  18. He, L., Luo, Y.F., Zhi, W.T., et al.: Colorimetric sensing of tetracyclines in milk based on the assembly of cationic conjugated polymer-aggregated gold nanoparticles. Food Anal. Meth. 6(6), 1704–1711 (2013)

    Article  Google Scholar 

  19. Chen, T.X., Ning, F., Liu, H.S., et al.: Label-free fluorescent strategy for sensitive detection of tetracycline based on triple-helix molecular switch and G-quadruplex. Chin. Chem. Lett. 28(7), 1380–1384 (2017)

    Article  Google Scholar 

  20. Yang, P., Zhu, Z.Q., Chen, M.M., et al.: Microwave-assisted synthesis of xylan-derived carbon quantum dots for tetracycline sensing. Opt. Mater. 85(11), 329–336 (2018)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yafei Dong .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 Springer Nature Singapore Pte Ltd.

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Wang, L., Wang, Y., Hu, M., Xi, S., Cheng, M., Dong, Y. (2022). Graphene Oxide-triplex Structure Based DNA Nanoswitches as a Programmable Tetracycline-Responsive Fluorescent Biosensor. In: Pan, L., Cui, Z., Cai, J., Li, L. (eds) Bio-Inspired Computing: Theories and Applications. BIC-TA 2021. Communications in Computer and Information Science, vol 1565. Springer, Singapore. https://doi.org/10.1007/978-981-19-1256-6_28

Download citation

  • DOI: https://doi.org/10.1007/978-981-19-1256-6_28

  • Published:

  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-19-1255-9

  • Online ISBN: 978-981-19-1256-6

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics