Abstract
This chapter provides an overview of geographic information systems, spatial analysis and spatial statistics, and predictive ecological niche modeling as they apply to disease ecology. I provide a conceptual model of the epidemiology and outbreak ecology of anthrax and the landscape ecology of the pathogen Bacillus anthracis. I apply Anselin’s exploratory spatial data analysis process to these two components of the anthrax-transmission and spore-survival model. Spatial clustering statistics are reviewed in the context of outbreak epidemiology and potential mechanical vector transmission. I then provide a primer on ecological niche theory and apply ecological niche modeling to estimate the potential geographic distribution of B. anthracis on the landscape of the contiguous United States under current and future climate scenarios and to estimate the unknown distribution of B. anthracis in Mexico.
Keywords
- Geographic Information System
- Bacillus Anthracis
- Exploratory Spatial Data Analysis
- Disease Ecology
- Geographic Information System Data
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References
Anselin, L. Spatial statistical modeling in a GIS environment. In Maguire, D., Batty, M., Goodchild, M., editors. GIS, spatial analysis, and modeling. Redlands, CA: ESRI Press; 2005. p. 498.
Smith, K.L., De Vos, V., Price, L.B., Hugh-Jones, M.E., Keim, P. 2000. Bacillus anthracis diversity in Kruger National Park. J. Clin. Microbiol. 38:3780–3784.
Hugh-Jones, M.E., De Vos, V. 2002. Anthrax and wildlife. Rev. Sci. Tech. 21:359–383.
Blackburn, J.K., McNyset, K.M., Hugh-Jones, M.E., Curtis, A. 2007. Modeling the geographic distribution of Bacillus anthracis, the causative agent of anthrax disease, for the contiguous United States using predictive ecological niche modeling. Am. J. Trop. Med. Hyg. 77:1103–1110.
Van Ness, G., Stein, C.D. 1956. Soils of the United States favorable for anthrax. J. Am. Vet. Med. Assoc. 128:7–9.
Van Ness, G.B. 1971. Ecology of anthrax. Science 172:1303–1307.
Dragon, D.C., Rennie, R.P. 1995. The ecology of anthrax spores: tough but not invincible. Can. Vet. J. 36:295–301.
Turner, A.J., Galvin, J.W., Rubira, R.J., Miller, G.T. 2001. Anthrax explodes in an Australian summer. J. Appl. Microbiol. 87:196–199.
Parkinson, R. Andrijana, R. Jenson, C. 2003. Investigation of an anthrax outbreak in Alberta in 1999 using a geographic information system. Can. Vet. J. 44:315–318.
Lindeque, P.M., Turnbull, P.C.B. 1994. Ecology and epidemiology of anthrax in the Etosha National Park, Namibia. Onderstepoort J. Vet. Res. 61:71–83.
Smith, K.L., De Vos, V., Bryden, H.B., Hugh-Jones, M.E., Klevytska, A., Price, L.B., Keim, P., Scholl, D.T. 1999. Meso-scale ecology of anthrax in southern Africa: a pilot study of diversity and clustering. J. Appl. Microbiol. 87:204–207.
Blackburn, J.K. Evaluating the spatial ecology of anthrax in North America: examining epidemiological components across multiple geographic scales using a GIS-based approach. Doctoral Dissertation, Louisiana State University, Department of Geography and Anthropology, 2006.
Braack, L.E.O., De Vos, V. 1990. Feeding habits and flight ranges of blow-flies (Chryosoma spp.) in relation to anthrax transmission in the Kruger National Park, South Africa. Onderstepoort J. Vet. Res. 57:141–142.
De Vos, V., Bryden, H.B. 1996. Anthrax in the Kruger National Park: temporal and spatial patterns of disease occurrence. Salisbury Med. Bull. 87(suppl.):26–30.
Kraneveld F.C., Djaenoedin, R. 1940. Test on the dissemination of anthrax by Tabanus rubidus in horses and buffalo. Overgedrukt uit de Nederlands-Indische Bladen Voor Diergeneeskunde 52:339–380.
Rao, N.S., Mohiyudeen, S. 1958. Tabanus flies as transmitters of anthrax - a field experience. Indian Vet. J. 35:348–353
Davies, J.C. 1983. A major epidemic of anthrax in Zimbabwe. Part II. Cent. Afr. J. Med. 29:8–12.
Turell, M.J., Knudson, G.B. 1987. Mechanical transmission of Bacillus anthrasis by stable flies (Stomoxys calcitrans) and mosquitoes (Aedes aegypti and Aedes taeniorhynchus). Infect. Immun. 55:1859–1861.
Ganeva, D.J. 2004. Analysis of the Bulgarian tabanid fauna with regard to its potential for epidemiological involvement. Bulg. J. Vet. Med. 7:1–8.
Fullbright, T.E., Ortega-S., J.A. White-tailed deer habitat ecology and management on rangelands. College Station, TX: Texas A&M University Press; 2006.
Gates, C.C., Elkin, B.T., Dragon, D.C. 1995. Investigation, control, and epizootiology of anthrax in a geographically isolated, free-roaming bison population in northern Canada. Can. J. Vet. Res. 59:256–264.
Getis, A., Morrison, A.C., Gray, K., Scott, T.W. 2003. Characteristics of the spatial pattern of the dengue vector, Aedes aegypti, in Iquitos, Peru. Am. J. Trop. Med. Hyg. 69:494–505.
Haines-Young, R., Green, D.R., Cousins, S. Landscape ecology and spatial information systems. In: Haines-Young, R., Green, D.R., Cousins, S, editors. Landscape ecology and geographic information systems. Bristol, UK: Taylor & Francis, Inc.; 1994. pp. 3–8.
Dragon D.C., Bader D.E., Mitchell J., Wollen N. 2005. Natural dissemination of Bacillus anthracis spores in northern Canada. Appl. Environ. Microbiol. 71:1610–1615.
Rogers, D.J. 2006. Models for vectors and vector-borne diseases. In: Hay, S., Graham, A.J., Rogers, D.J., editors. Global mapping of infectious diseases: methods, examples, and emerging application. London: Academic Press; 2006.
Clarke, K.C., McLafferty, S.L., Tempalski, B.J. 1996. On epidemiology and geographic information systems: a review and discussion of future directions. Emerg. Infect. Dis. 2:85–92.
Smith, A.P., Horning, N., Moore, D. 1997. Regional biodiversity planning and lemur conservation with GIS in western Madagascar. Conserv. Biol. 11:498–512.
Blackburn, J.K., Curtis, A., Mujia, F.C., Jones, F., Dorn, P., Coates, R. 2008. The development of the Chagas’ Online Data Entry System (CODES-GIS). Trans. GIS 12:249–265.
Kulldorff, M. 2001. Prospective time periodic geographical disease surveillance using a scan statistic J. Royal Stat. Soc. Series A (Stat. Soc.) 164:61–72.
Guisan, A., Zimmermann, N.E. 2000. Predictive habitat distribution models in ecology. Ecol. Model. 135:147–186.
Curtis, A.C., Blackburn, J.K., Sansyzbayev, Y. Using a geographic information system to spatially investigate infectious disease. In: Tibayrenc, M., editor. Encyclopedia of infectious diseases: modern methodologies. London: John Wiley & Sons, Inc; 2007.
Cutter, S.L., Boruff, B.J., Shirley, W.L. 2003. Social vulnerability to environmental hazards. Soc. Sci. Q. 84:242–261.
Longley, P.A., Goodchild, M.F., Maguire, D.J., Rhind, D.W. Geographic information systems and science, second edition. New York: Wiley; 2005.
Maguire, D.J., Batty, M., Goodchild, M.F., editors. GIS, spatial analysis, and modeling. Redlands, CA: ESRI Press; 2005.
Curtis, A., Mills, J.W., Leitner, M. 2007. Katrina and vulnerability: the geography of stress. J. Health Care Poor Underserved 18:315–330.
Eisen, R.J., Bearden, S.W., Wilder, A.P., Montenieri, J.A., Antolin, M.F., Gage, K.L. 2006. Early-phase transmission of Yersinia pestis by unblocked fleas as a mechanism explaining rapidly spreading plague epizootics. Proc. Natl. Acad. Sci. U S A 103:15380–15385.
Randolph, S., Rogers, D.J. Ecology of tick-borne disease and the role of climate. In: Ergonul, O., Whitehouse, C.A., editors. Crimean-Congo hemorrhagic fever: a global perspective. New York: Springer;2007. pp. 167–186.
Peterson, A.T., Sanchez-Cordero, V., Beard, C.B., Ramsey, J.M. 2002. Ecologic niche modeling and potential reservoirs for Chagas disease, Mexico. Emerg. Infect. Dis. 8:662–667.
Lam N.S.N., Liu, K.B. 1994. Spread of AIDS in rural America, 1982-1990. J. Acquir. Immune Defic. Syndr. 7:485–490.
Peterson, A.T., Bauer, J.T., Mills, J.N. 2004. Ecologic and geographic distribution of Filovirus disease. Emerg. Infect. Dis. 10:40–47.
Goodchild, M.F. 1992. Geographical information science. Int. J. Geo. Inform. Sys. 6:31–45.
Mark, D.M. Geographic information science: defining the field. In: Duckham, M., Goodchild, M.F., Worboys, M.F., editors. Foundations of geographic information science. New York: Taylor and Francis; 2003. pp. 3–18.
Goodchild, M.F. 2004. GIScience: geography, form, and process. Ann. Assoc. Am. Geographers 94:709–714.
Goodchild, M.F. Geographical information science: fifteen years later. In Fisher, P.F., editor. Classics from IJGIS: twenty years of the International Journal of Geographical Information Science and Systems. Boca Raton, FL: CRC Press; 2006. pp. 199–204.
Getis, A., Ord, J.K. 1992. The analysis of spatial association by use of distance statistics. Geo. Anal. 24:189–260.
Durbeck, H., Greiling, D., Estberg, L., Long, A., Jacquez, G. ClusterSeer™ software for identifying event clusters: user guide 2. Crytsal Lake, IL: TerraSeer, Inc.; 2002. p. 316.
Sagiyev, Z., Pazilov, Y., Lukhnova, L., Temiraliyeva, G., Meka-Menchenko, T., Sansyzbayev, Y., Joyner, T.A., Curtis, A., Hugh-Jones, M.E., Blackburn, J.K. Spatial hotspots of anthrax cases in Kazakh livestock: identifying control strategy needs. Oral Presentation. URISA’s GIS in Public Health Conference, May 20–23, 2007, New Olreans, Louisiana.
Hutchinson, G.E. 1978. An introduction to population ecology. New Haven, CT: Yale University Press; 1978.
Johnson, R.H. Determinate evolution in the color pattern of the lady-beetles. Publication No. 122. Washington, DC: Carnegie Institute of Washington; 1910.
Grinnell, J. 1917. The niche-relationships of the California Thrasher. Auk. 34:427–433.
Hutchinson, G.E. 1944. Limnological studies in Connecticut. VII. A critical examination of the supposed relationship between phytoplakton periodicity and chemical changes in lake waters. Ecology 25:3–26.
Hutchinson, G.E. 1957. Concluding remarks. Cold Spring Harbour Symposium on Quantitative Biology 22:415–427.
MacArthur, R.H. 1958. Population ecology of some warblers of northeastern coniferous forests. Ecology 39:599–619.
Morrison, M.L., Hall, L.S. Standard terminology: toward a common language to advance ecological understanding and application. In: Scott, J.M., Heglund, P.J., Morrison, M.L., Haufler, J.B., Raphael, M.G., Wall, W.A., Samson, F.B., editors. Predicting species occurrences: issues of accuracy and scale. Washington, DC: Island Press; 2002. pp. 43–52.
Chase, J.M., Leibold, M.A. Ecological niches: linking classical and contemporary approaches. Chicago: University of Chicago Press; 2003.
Peterson, A.T. 2008. Biogeography of diseases: a framework for analysis. Naturwissenschaften 95:483–491.
Peterson, A.T. 2006. Ecologic niche modeling and spatial patterns of disease transmission. Emerg. Infect. Dis. 12:1822–1826.
Stockwell, D., Peters, D. 1999. The GARP modelling system: problems and solutions to automated spatial prediction. Int. J. Geo. Inform. Sci. 13:143–158.
Rogers, D.J. Satellites, space, time and the African trypanosomiases. In: Hay, S.I., Randolph, S.E., Rogers, D.J., editors. Remote sensing and geographical information systems in epidemiology. London: Academic Press; 2000.
Phillips, S.J., Anderson, R.P., Schapire, R.E. 2006. Maximum entropy modeling of species geographic distributions. Ecol. Model. 190:231–259.
Adjemian, J.C.Z., Girvetz, E.H., Beckett, L., Foley, J.E. 2006. Analysis of genetic algorithm for rule-set prodution (GARP) modeling approach for predicting distributions of fleas implicated as vectors of plague, Yersinia pestis, in California. J. Med. Entomol. 43:93–103.
Ron, R.S. 2005. Predicting the distribution of the amphibian pathogen Batrachochytrium dendrobatidis in the New World. Biotropica 37:209–221.
Stockwell D.R.B., Peterson A.T. 2002. Effects of sample size on accuracy of species distribution models. Ecol. Model. 148:1–13.
Anderson, R.P., Lew, D., Peterson, A.T. 2003. Evaluating predictive models of species’ distributions: criteria for selecting optimal models. Ecol. Model. 162:211–232.
Kluza, D.A., McNyset, K.M. 2005. Ecological niche modeling of aquatic invasion species. Aquat. Invad. 16:1–7.
McNyset, K.M. 2005. Use of ecological niche modelling to predict distributions of freshwater fish species in Kansas. Ecol. Freshwater Fish 14:243–255.
Hijmans, R.J., Cameron, S.E., Parra, J.L., Jones P.G., Jarvis, A. 2005. Very high resolution interpolated climate surfaces for global land areas. Int. J. Climatol. 25:1965–1978.
Hay, S.I., Tatem, A.J., Graham, A.J., Goetz, S.J., Rogers, D.J. Global environmental data for mapping infectious disease distribution. In: Hay, S., Graham, A.J., Rogers, D.J., editors. Global mapping of infectious diseases: methods, examples, and emerging application. London: Academic Press; 2006.
Nakicenovic, N., Swart, R., editors. Emissions scenarios: a special report of Working Group III of the Intergovernmental Panel on Climate Change. Cambridge, UK: Cambridge University Press; 2000.
Peterson, A.T., Martínez-Meyer, E., González-Salazar, C., Hall, P. 2004. Modeled climate change effects on distributions of Canadian butterfly species. Can. J. Zool. 82:851–858.
Wiley, E.O., McNyset, K.M., Peterson, A.T., Robins, C.R., Stewart, A.M. 2003. Niche modeling and geographic range predictions in the marine environment using a machine-learning algorithm. Oceanography 16:120–127.
Centor, R.M. 1991. Signal detectability: the use of ROC curves and their analyses. Med. Decis. Mak. 11:102–106.
Zweig, M.H., Campbell, G. 1993. Receiver-operating characteristic (ROC) plots: a fundamental evaluation tool in clinical medicine. Clin. Chem. 39:561–577.
Hanley, J.A., McNeil, B.J. 1982. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143:29–36.
Patterson, B.D., Ceballos, G., Sechrest, W., Tognelli, M.F., Brooks, T., Luna, L., Ortega, P., Salazar, I., Young, B.E. Digital distribution maps of the mammals of the western hemisphere, version 3.0. Arlington, VA: NatureServe; 2007.
Stein, C.D. 1945. The history and distribution of anthrax in livestock in the United States. Vet. Med. 40:340–349.
Van Ert, M.N., Easterday, W.R., Huynh, L.Y., Okinaka, R.T., Hugh-Jones, M.E., Ravel, J., Zanecki, S.R., Pearson, T., Simonson, T., Uren, J.M., Kachur, S.M., Leadem-Dougherty, R.R., Rhoton, S.D., Zinser, G., Farlow, J., Coker, P.R., Smith, K.L., Wang, B., Kenefic, L.J., Fraser-Liggett, C.M., Wagner, D.M., Keim, P. 2007. Global genetic population structure of Bacillus anthracis. PLoS ONE 2:e461.
Machado, M.A. 1976. An industry in limbo: the Mexican cattle industry 1920–1924. Ag. His. 50:615–625.
Hugh-Jones, M. 1999. 1996–97 global anthrax report. J. Appl. Microbiol. 87:189–191.
Fragoso Uribe, R., Villicana Fuentes, H. 1984. Antrax en dos communidades de Zacatecas, Mexico. Bol. Oficina Sanit. Panam. 97:526–533.
Anthrax-cattle, human, livestock, Mexico (Michoacan). ProMED-mail, June 22, 2003. 20030622.1543. Available at http://www.promedmail.org. Accessed August 27, 2007.
Siefert, H.S., Bader, K., Cyplik, J., González Salinas, J., Roth, F., Salinas Meléndez, J.A., Sukop, U. 1996. Environment, incidence, aetiology, epizootiology and immunoprophylaxis of soil-borne diseases in north-east Mexico. Zentralbl. Veterinarmed B. 43:593–606.
de la Rocque, S., Hendrickx, G., Morand, S., editors. 2008. Climate change: impact on epidemiology and control in animal diseases. Revue Scientifique et Technique, OIE, 27(2).
Holt, R.D., Gaines, M.S. 1992. Analysis and adaptation in heterogeneous landscapes: implications for the evolution of fundamental niches. Evolution. Ecol. 6:433–337.
Peterson, A.T., Soberon, J., Sanchez-Cordero, V. 1999. Conservatism of ecological niches in evolutionary time. Science 285:1265–1267.
Peterson, A.T. 2003. Predicting the geography of species’ invasions via ecological niche modeling. Q. Rev. Biol. 78:419–433.
Van Ness, G.B. 1959. Soil relationship in the Oklahoma-Kansas anthrax outbreak of 1957. J. Soil Water Conserv. 14:70–71.
Isard, S.A., Schaetzl, R.J., Andresen, J.A. 2007. Soils cool as climate warms in the Great Lakes region: 1951–2000. Ann. Assoc. Am. Geog. 97:467–476.
Strode, P.K. 2003. Implications of climate change for North American wood warblers (Parulidae). Global Change Biol. 9:1137–1144.
Bradley, N.L., Leopold, A.C., Ross, J., Huffaker, W. 1999. Phenological changes reflect climate change in Wisconsin. Proc. Natl. Acad. Sci. U S A 96:9701–9704.
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Blackburn, J.K. (2010). Integrating Geographic Information Systems and Ecological Niche Modeling into Disease Ecology: A Case Study of Bacillus anthracis in the United States and Mexico. In: O'Connell, K., Skowronski, E., Sulakvelidze, A., Bakanidze, L. (eds) Emerging and Endemic Pathogens. NATO Science for Peace and Security Series A: Chemistry and Biology, vol 00. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-9637-1_7
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