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Isolation and analysis of chromosome 21 genes potentially involved in Down Syndrome

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The Molecular Biology of Down Syndrome
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Abstract

Down syndrome is the most common birth defect (1 in 700 newborns) and the most important cause of mental retardation. This disease is characterized by a complex phenotype, mainly including morphological abnormalities of the head and limbs, short stature, hypotonia, hyperlaxity of ligaments, visceral malformations (particularly heart defects), and a constant mental retardation. In most cases, it results from the presence of an entire chromosome 21 in excess in all cells of the afflicted individuals. Phenotype-genotype correlation of rare patients with partial trisomy 21 identified a small region of chromosome 21 on 21q22.2, duplication of which is associated with many features of the syndrome (Rahmani et al., 1989, 1990). This region, named Down syndrome Chromosome Region 1 or DCR1, is associated with short stature, hypotonia, joint hyperlaxity, face and limbs dysmorphy, and mental retardation (Delabar et al., 1993).

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References

  • Blouin JL, Duriaux-Sail G, Chen H, Gos A, Morris MA, Rossier C, Antonarakis SE (1996) Mapping of the gene for the p60 subunit of the human chromatin assembly factor (CAF1A) to the Down syndrome region of chromosome 21. Genomics 33(2): 309–312

    Article  PubMed  CAS  Google Scholar 

  • Blouin JL, Duriaux Saïl G, Antonarakis SE (1996) Mapping of the human holocarboxylase synthetase gene (HCS) to the Down syndrome critical region of chromosome 21q22. Ann Genet 39(3): 185–188

    Google Scholar 

  • Chen H, Antonarakis SE (1997) Localisation of a human homologue of the Drosophila mnb and rat Dyrk genes to chromosome 21q22.2. Hum Genet 99(2): 262–265

    Article  PubMed  CAS  Google Scholar 

  • Chen H, Chrast R, Rossier C, Gos A, Antonarakis SE, Kudoh J, Yamaki A, Shindoh N, Maeda H, Minoshima S, Shimizu N (1995) Single-minded and Down Syndrome? Nat Genet 10(1): 9–10

    Article  PubMed  Google Scholar 

  • Crété N, Gosset P, Théophile D, Duterque-Coquillaud M, Blouin JL, Vayssettes C, Sinet PM, Créau-Goldberg N (1993) Mapping the Down syndrome chromosome region. Establishment of a YAC contig spanning 1.2 megabases. Eur J Hum Genet 1(1): 51–63

    PubMed  Google Scholar 

  • Dahmane N, Charron G, Lopes C, Yaspo ML, Maunoury C, Decorte L, Sinet PM, Bloch B, Delabar JM (1995) Down syndrome-critical region contains a gene homologous to Drosophila sim expressed during rat and human central nervous system development. Proc Natl Acad Sci USA 92(20): 9191–9195

    Article  PubMed  CAS  Google Scholar 

  • Dahmane N, Ait Ghezala G, Gosset P, Chamoun Z, Dufresne Zacharia MC, Lopes C, Rabatel N, Gassanova Maugenre S, Chettouh Z, Abramowski V, Fayet E, Yaspo ML, Korn B, Blouin JL, Lehrach H, Poutska A, Antonarakis SE, Sinet PM, Créau N, Delabar JM (1998) Transcriptional map of the 2.5-Mb CBR-ERG region of chromosome 21 involved in Down syndrome. Genomics 48(1): 12–23

    Google Scholar 

  • Delabar JM, Théophile D, Rahmani Z, Chettouh Z, Blouin JL, Prieur M, Noel B, Sinet PM (1993) Molecular mapping of twenty-four features of Down syndrome on chromosome 21. Eur J Hum Genet 1(2): 114–124

    PubMed  CAS  Google Scholar 

  • Dufresne-Zacharia MC, Dahmane N, Théophile D, Orti R, Chettouh Z, Sinet PM, Delabar JM (1994) 3.6 megabase genomic and YAC physical map of the Down syndrome region on chromosome 21. Genomics 19: 462–469

    Article  PubMed  CAS  Google Scholar 

  • Fan CM, Kuwana E, Bulfone A, Fletcher CF, Copeland NG, Jenkins NA, Crews S, Martinez S, Puelles L, Rubenstein JL, Tessier-Lavigne M (1996) Expression patterns of two murine homologs of Drosophila single-minded suggest possible roles in embryonic patterning and in the pathogenesis of Down syndrome. Mol Cell Neurosci 7(1): 1–16

    Article  PubMed  CAS  Google Scholar 

  • Gosset P (1998) Cloning, physical mapping, and identification of genes of the D21S55-ETS2 region, which is involved in the Down Syndrome. [Isolement, cartographie et identification des gènes de la région D21S55-ETS2 impliquée dans la pathogénie de la trisomie 21]. Thesis, Université Paris 7

    Google Scholar 

  • Gosset P, Crété N, Ait Ghezala G, Théophile D, Van Broeckhoven C, Vayssettes C, Sinet PM, Créau N (1995) A high-resolution map of 1.6 Mb in the Down syndrome region: a new map between D21S55 and ETS2. Mamm Genome 6(2): 127–130

    Google Scholar 

  • Gosset P, Ait Ghezala G, Korn B, Yaspo ML, Poutska A, Lehrach H, Sinet PM, Créau N (1997) A new inwardly rectifier potassium channel gene (KCNJ15) localized on chromosome 21 in the Down syndrome chromosome region 1 (DCR1). Genomics 44: 237–241

    Google Scholar 

  • Guimera J, Casas C, Pucharcós C, Solans A, Domènech A, Planas AM, Ashley J, Lovett M, Estivili X, Pritchard MA (1996) A human homologue of Drosophila minibrain (MNB) is expressed in the neuronal regions affected in Down syndrome and maps to the critical region. Hum Mol Genet 5(9): 1305–1310

    Article  PubMed  CAS  Google Scholar 

  • Katsanis N, Fisher EM (1996) The gene encoding the p60 subunit of chromatin assembly factor I (CAF1P60) maps to human chromosome 21q22.2, a region associated with some of the major features of Down syndrome. Hum Genet 98(4): 497–499

    Article  PubMed  CAS  Google Scholar 

  • Kaufman PD, Kobayashi R, Kessler N, Stillman B (1995) The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication. Cell 81(7): 1105–1114

    Article  PubMed  CAS  Google Scholar 

  • Korenberg JR, Bradley C, Disteche CM (1992) Down syndrome: molecular mapping of the congenital heart disease and duodenal stenosis. Am J Hum Genet 50: 294–302

    PubMed  CAS  Google Scholar 

  • Korenberg JR, Chen XN, Schipper R, Sun Z, Gonsky R, Gerwehr S, Carpenter N, Daumer C, Dignan P, Disteche C et al (1994) Down syndrome phenotypes: the consequences of chromosomal imbalance. Proc Natl Acad Sci USA 91(11): 4997–5001

    Article  PubMed  CAS  Google Scholar 

  • Korn B, Sedlacek Z, Manca A, Kioschis P, Konecki D, Lehrach H, Poustka A (1992) A strategy for the selection of transcribed sequences in the Xq28 region. Hum Mo1 Genet 1(4): 235–242

    Article  CAS  Google Scholar 

  • Lemieux N, Malfoy B, Forrest GL (1993) Human carbonyl reductase (CBR) localized to band 21q22.1 by high-resolution fluorescence in situ hybridization displays gene dosage effects in trisomy 21 cells. Genomics 15(1): 169–172

    Article  PubMed  CAS  Google Scholar 

  • Lopes C, Rachidi M, Gassanova S, Sinet PM, Delabar JM (1999) Developmentally regulated expression of mtprd, the murine ortholog of tprd, a gene from the Down syndrome chromosomal region 1. Mech Dev 84(1–2): 189–193

    Article  PubMed  CAS  Google Scholar 

  • Mattei JF, Mattei MG, Beateman MA, Giraud F (1981) Trisomy 21 for the region 21q22.3: identification by high resolution R banding patterns. Hum Genet 56:409–411

    Article  PubMed  CAS  Google Scholar 

  • McCormick MK, Schinzel A, Petersen MB, Stetten G, Driscoll DJ, Cantu ES, Tranebjaerg L, Mikkelsen M, Watkins PC, Antonarakis SE (1989) Molecular genetic approach to the characterization of the Down syndrome region of chromosome 21. Genomics 5(2): 325–331

    Article  PubMed  CAS  Google Scholar 

  • Muenke M, Bone LJ, Mitchell HF, Hart I, Walton K, Hall-Johnson K, Ippel EF, Dietz-Band J, Kvaløy K, Fan CM, et al (1995) Physical mapping of the holoprosencephaly critical region in 21q22.3, exclusion of SIM2 as a candidate gene for holoprosencephaly, and mapping of SIM2 to a region of chromosome 21 important for Down syndrome. Am J Hum Genet 57(5): 1074–1079

    PubMed  CAS  Google Scholar 

  • Nagase T, Seki N, Tanaka A, Ishikawa K, Nomura N (1995) Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1. DNA Res 2(4): 167–174

    Article  PubMed  CAS  Google Scholar 

  • Nizetic D, Zehetner G, Monaco AP, Gellen L, Young BD, Lehrach H (1991) Construction, arraying, and high-density screening of large insert libraries of human chromosomes X and 21: their potential use as reference libraries. Proc Natl Acad Sci USA 88: 8233–8237

    Article  Google Scholar 

  • Ohira M, Ootsuyama A, Suzuki E, Ichikawa H, Seki N, Nagase T, Nomura N, Ohki M (1996) Identification of a novel human gene containing the tetratricopeptide repeat domain from the Down syndrome region of chromosome 21. DNA Res 3(1): 9–16

    Article  PubMed  CAS  Google Scholar 

  • Ohira M, Seki N, Nagase T, Suzuki E, Nomura N, Ohara O, Hattori M, Sakaki Y, Eki T, Murakami Y, Saito T, Ichikawa H, Ohki M (1997) Gene identification in 1.6 Mb region of the Down syndrome region on chromosome 21. Genome Res 7: 47–58

    Article  PubMed  CAS  Google Scholar 

  • Patii N, Cox DR, Bhat D, Faham M, Myers RM, Peterson AS (1995) A potassium channel mutation in weaver mice implicates membrane excitability in granule cell differentiation. Nat Genet 11(2): 126–129

    Article  Google Scholar 

  • Poissonnier M, Saint-Paul B, Dutrillaux B, Chassaigne M, Gruyer P, de Blignières-Strouk G (1976) Trisomie 21 partielle (21q21-21q22.2). Ann Genet 19(1): 69–73

    PubMed  CAS  Google Scholar 

  • Rahmani Z, Blouin JL, Créau-Goldberg N, Watkins PC, Mattei JF, Poissonnier M, Prieur M, Chettouh Z, Nicole A, Aurias A, Sinet PM, Delabar JM (1989) Critical role of the D21S55 region on chromosome 21 in the pathogenesis of Down syndrome. Proc Natl Acad Sci USA 86: 5958–5962

    Article  PubMed  CAS  Google Scholar 

  • Rahmani Z, Blouin JL, Créau-Goldberg N, Watkins PC, Mattei JF, Poissonnier M, Prieur M, Chettouh Z, Nicole A, Aurias A, et al (1990) Down syndrome critical region around D21S55 on proximal 21q22.3. Am J Med Genet [Suppl] 7: 98–103

    CAS  Google Scholar 

  • Rahmani Z, Lopes C, Rachidi M, Delabar JM (1998) Expression of the mnb (dyrk) protein in adult and embryonic mouse tissues. Biochem Biophys Res Commun 253(2): 514–518

    Article  PubMed  CAS  Google Scholar 

  • Shindoh N, Kudoh J, Maeda H, Yamaki A, Minoshima S, Shimizu Y, Shimizu N (1996) Cloning of a human homolog of the Drosophila minibrain/rat Dyrk gene from the Down syndrome critical region of chromosome 21. Biochem Biophys Res Commun 225(1): 92–99

    Article  PubMed  CAS  Google Scholar 

  • Shuck ME, Piser TM, Bock JH, Slightom JL, Lee KS, Bienkowski MJ (1997) Cloning and characterization of two K+ inward rectifier (Kir) 1.1 potassium channel homologs from human kidney (Kir1.2 and Kir1.3). J Biol Chem 272(1): 586–593

    Article  PubMed  CAS  Google Scholar 

  • Signorini S, Liao YJ, Duncan SA, Jan LY, Stoffel M (1997) Normal cerebellar development but susceptibility to seizures in mice lacking G protein-coupled, inwardly rectifying K+ channel GIRK2. Proc Natl Acad Sci USA 94(3): 923–927

    Article  PubMed  CAS  Google Scholar 

  • Smith DJ, Stevens ME, Sudanagunta SP, Bronson RT, Makhinson M, Watabe AM, O’Dell TJ, Fung J, Weier HU, Cheng JF, Rubin EM (1997) Functional screening of 2Mb of human chromosome 21q22.2 in transgenic mice implicates minibrain in learning defects associated with Down syndrome. Nat Genet 16(1): 28–36

    Article  PubMed  CAS  Google Scholar 

  • Song WJ, Sternberg LR, Kasten-Sportès C, Keuren ML, Chung SH, Slack AC, Miller DE, Glover TW, Chiang PW, Lou L, Kurnit DM (1996) Isolation of human and murine homologues of the Drosophila minibrain gene: human homologue maps to 21q22.2 in the Down syndrome critical region. Genomics 38(3): 331–339

    Article  PubMed  CAS  Google Scholar 

  • Suzuki Y, Aoki Y, Ishida Y, Chiba Y, Iwamatsu A, Kishino T, Niikawa N, Matsubara Y, Narisawa K (1994) Isolation and characterization of mutations in the human holocarboxylase synthetase cDNA. Nat Genet 8(2): 122–128 (Abstract)

    Article  PubMed  CAS  Google Scholar 

  • Velculescu VE, Zhang L, Vogelstein B, Kinzler KW (1995) Serial analysis of gene expression. Science 270(5235): 484–487

    Article  PubMed  CAS  Google Scholar 

  • Wermuth B, Bohren KM, Heinemann G, von Wartburg JP, Gabbay KH (1988) Human carbonyl reductase. Nucleotide sequence analysis of a cDNA and amino acid sequence of the encoded protein. J Biol Chem 263(31): 16185–16188

    PubMed  CAS  Google Scholar 

  • Yamaki A, Noda S, Kudoh J, Shindoh N, Maeda H, Minoshima S, Kawasaki K, Shimizu Y, Shimizu N (1996) The mammalian single-minded (SIM) gene: mouse cDNA structure and diencephalic expression indicate a candidate gene for Down syndrome. Genomics 35(1): 136–143

    Article  PubMed  CAS  Google Scholar 

  • Yaspo ML, Gellen L, Mott R, Korn B, Nizetic D, Poustka AM, Lehrach H (1995) Model for a transcript map of human chromosome 21: isolation of new coding sequences from exon and enriched cDNA libraries. Hum Mol Genet 4(8): 1291–1304

    Article  PubMed  CAS  Google Scholar 

  • Zhang XX, León-Del-Rio A, Gravel RA, Eydoux P (1997) Assignment of holocar-boxylase synthetase gene (HLCS) to human chromosome band 21q22.1 and to mouse chromosome band 16C4 by in situ hybridization. Cytogenet Cell Genet 76(3–4): 179

    Article  PubMed  CAS  Google Scholar 

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© 1999 Springer-Verlag Wien

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Gosset, P., Ait-Ghezala, G., Sinet, PM., Créau, N. (1999). Isolation and analysis of chromosome 21 genes potentially involved in Down Syndrome. In: Lubec, G. (eds) The Molecular Biology of Down Syndrome. Springer, Vienna. https://doi.org/10.1007/978-3-7091-6380-1_12

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  • DOI: https://doi.org/10.1007/978-3-7091-6380-1_12

  • Publisher Name: Springer, Vienna

  • Print ISBN: 978-3-211-83377-3

  • Online ISBN: 978-3-7091-6380-1

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