Skip to main content

The Family Comamonadaceae

  • Reference work entry
  • First Online:

Abstract

The family Comamonadaceae is a large and diverse bacterial family belonging to the order Burkholderiales. It is regularly enlarged with new genera and species and currently comprises over 100 species in the following 29 genera: Acidovorax, Albidiferax, Alicycliphilus, Brachymonas, Caenimonas, Comamonas, Curvibacter, Delftia, Diaphorobacter, Extensimonas, Giesbergeria, Hydrogenophaga, Hylemonella, Lampropedia, Limnohabitans, Macromonas, Malikia, Ottowia, Polaromonas, Pseudacidovorax, Pseudorhodoferax, Ramlibacter, Rhodoferax, Simplicispira, Tepidicella, Variovorax, Verminephrobacter, Xenophilus, and Xylophilus. These genera form a phylogenetic cluster with a relative level of 16S rRNA gene sequence similarity of 93–97 %, yet harbor a remarkable phenotypic diversity that includes aerobic organotrophs, anaerobic denitrifiers and Fe3+-reducing bacteria, hydrogen oxidizers, photoautotrophic and photoheterotrophic bacteria, and fermentative bacteria. Most are environmental bacteria from water and soil habitats; however, some Comamonadaceae are also pathogens, and others have been described from earthworms, rumen fluid, and human clinical samples. Most are mesophiles, although a few have been found in Antarctic habitats and some in hot springs.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   699.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD   849.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  • Andersson S, Dalhammar G, Kuttuva Rajarao G (2011) Influence of microbial interactions and EPS/polysaccharide composition on nutrient removal activity in biofilms formed by strains found in wastewater treatment systems. Microbiol Res 166:449–457

    Google Scholar 

  • Bathe S (2004) Conjugal transfer of plasmid pNB2 to activated sludge bacteria leads to 3-chloroaniline degradation in enrichment cultures. Lett Appl Microbiol 38:527–531

    Article  CAS  PubMed  Google Scholar 

  • Blümel S, Busse HJ, Stolz A, Kämpfer P (2001) Xenophilus azovorans gen. nov., sp. nov., a soil bacterium that is able to degrade azo dyes of the Orange II type. Int J Syst Evol Microbiol 51:1831–1837

    Article  PubMed  Google Scholar 

  • Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA (2012) Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. J Bacteriol 194:5991–5993

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Bruland N, Bathe S, Willems A, Steinbüchel A (2009) Pseudorhodoferax soli gen. nov., sp. nov. and Pseudorhodoferax caeni sp. nov., two members of the class Betaproteobacteria belonging to the family Comamonadaceae. Int J Syst Evol Microbiol 59:2702–2707

    Article  CAS  PubMed  Google Scholar 

  • Byrne-Bailey KG, Weber KA, Chair AH, Bose S, Knox T, Spanbauer TL, Chertkov O, Coates JD (2010) Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY. J Bacteriol 192:1475–1476

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Canale-Parola E, Rosenthal SL, Kupfer DG (1966) Morphological and physiological characteristics of Spirillum gracile sp. n. Antonie van Leeuwenhoek. J Microbiol Serol 32:113–124

    CAS  Google Scholar 

  • Castagnola E, Conte M, Venzano P, Garaventa A, Viscoli C, Barretta MA, Pescetto L, Tasso L, Nantron M, Milanaccio C, Giacchino R (1997) Broviac catheter-related bacteraemias due to unusual pathogens in children with cancer: case reports with literature review. J Infect 34:215–218

    Article  CAS  PubMed  Google Scholar 

  • Chang YH, Han J, Chun J, Lee KC, Rhee MS, Kim YB, Bae KS (2002) Comamonas koreensis sp. nov., a non-motile species from wetland in Woopo, Korea. Int J Syst Evol Microbiol 52:377–381

    Article  CAS  PubMed  Google Scholar 

  • Chen WM, Lin YS, Sheu DS, Sheu SY (2012) Delftia litopenaei sp. nov., a poly-beta-hydroxybutyrate-accumulating bacterium isolated from a freshwater shrimp culture pond. Int J Syst Evol Microbiol 62:2315–2321

    Article  CAS  PubMed  Google Scholar 

  • Chen WM, Lin YS, Young CC, Sheu SY (2013) Pseudorhodoferax aquiterrae sp. nov., isolated from groundwater. Int J Syst Evol Microbiol 63:169–174

    Article  CAS  PubMed  Google Scholar 

  • Chitpirom K, Tanasupawat S, Akaracharanya A, Leepepatpiboon N, Prange A, Kim KW, Chul Lee K, Lee JS (2012) Comamonas terrae sp. nov., an arsenite-oxidizing bacterium isolated from agricultural soil in Thailand. J Gen Appl Microbiol 58:245–251

    Article  CAS  Google Scholar 

  • Choi JH, Kim MS, Roh SW, Bae JW (2010) Acidovorax soli sp. nov., isolated from landfill soil. Int J Syst Evol Microbiol 60:2715–2718

    Article  CAS  PubMed  Google Scholar 

  • Chou JH, Sheu SY, Lin KY, Chen WM, Arun AB, Young CC (2007) Comamonas odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus. Int J Syst Evol Microbiol 57:887–891

    Article  CAS  PubMed  Google Scholar 

  • Chung BS, Ryu SH, Park M, Jeon Y, Chung YR, Jeon CO (2007) Hydrogenophaga caeni sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 57:1126–1130

    Article  CAS  PubMed  Google Scholar 

  • Contzen M, Moore ERB, Blümel S, Stolz A, Kämpfer P (2000) Hydrogenophaga intermedia sp. nov., a 4-aminobenzenesulfonate degrading organism. Syst Appl Microbiol 23:487–493

    Article  CAS  PubMed  Google Scholar 

  • Cooper GR, Staples ED, Iczkowski KA, Clancy CJ (2005) Comamonas (Pseudomonas) testosteroni endocarditis. Cardiovasc Pathol 14:145–149

    Article  PubMed  Google Scholar 

  • Dangel W, Tschech A, Fuchs G (1988) Anaerobic metabolism of cyclohexanol by denitrifying bacteria. Arch Microbiol 150:358–362

    Article  CAS  PubMed  Google Scholar 

  • Darcy JL, Lynch RC, King AJ, Robeson MS, Schmidt SK (2011) Global distribution of Polaromonas phylotypes – evidence for a highly successful dispersal capacity. PLoS ONE 6:e23742

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Davidson SK, Stahl DA (2006) Transmission of nephridial bacteria of the earthworm Eisenia fetida. Appl Environ Microbiol 72:769–775

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Davidson SK, Stahl DA (2008) Selective recruitment of bacteria during embryogenesis of an earthworm. ISME J 2:510–518

    Article  PubMed  Google Scholar 

  • Davis GHG, Park RWA (1962) A taxonomic study of certain bacteria currently classified as Vibrio species. J Gen Microbiol 27:101–119

    Google Scholar 

  • Davis DH, Stanier RY, Doudoroff M, Mandel M (1970) Taxonomic studies on some Gram negative polarly flagellated “hydrogen bacteria” and related species. Arch Mikrobiol 70:1–13

    Article  CAS  PubMed  Google Scholar 

  • Degryse E, Glansdorff N, Pierard A (1978) A comparative analysis of extreme thermophilic bacteria belonging to the genus Thermus. Arch Microbiol 117:189–196

    Article  CAS  PubMed  Google Scholar 

  • Delafield FP, Doudoroff M, Palleroni NJ, Lusty CJ, Contopoulos R (1965) Decomposition of poly-β-hydroxybutyrate by pseudomonads. J Bacteriol 90:1455–1466

    CAS  PubMed Central  PubMed  Google Scholar 

  • De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Maréchal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Méjean V, DuBow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Verméglio A, Achouak W, Heulin T (2011) The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment. PLoS One 6:e23784

    Article  PubMed Central  PubMed  CAS  Google Scholar 

  • den Dooren de Jong LE (1926) Bijdrage tot de kennis van het mineralisatieproces. Nijgh en Van Ditmar, Rotterdam

    Google Scholar 

  • De Vos P, De Ley J (1983) Intra- and intergeneric similarities of Pseudomonas and Xanthomonas ribosomal ribonucleic acid cistrons. Int J Syst Bacteriol 33:487–509

    Article  Google Scholar 

  • De Vos P, Kersters K, Falsen E, Pot B, Gillis M, Segers P, De Ley J (1985) Comamonas Davis and Park 1962 gen. nov., norn. rev. emend., and Comamonas terrigena Hugh 1962 sp. nov., norn. rev. Int J Syst Bacteriol 35:443–453

    Article  Google Scholar 

  • Ding L, Yokota AA (2004) Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis, [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum] autotrophicum as Herbaspirillum huttiense comb. nov., Curvibacter lanceolatus comb. nov., Curvibacter delicatus comb. nov. and Herbaspirillum autotrophicum comb. nov. Int J Syst Evol Microbiol 54:2223–2230

    Article  CAS  PubMed  Google Scholar 

  • Ding L, Yokota A (2010) Curvibacter fontana sp. nov., a microaerobic bacteria isolated from well water. J Gen Appl Microbiol 56:267–271

    Article  CAS  PubMed  Google Scholar 

  • Dreo T, Gruden K, Manceau C, Janse JD, Ravnikar M (2007) Development of a real-time PCR-based method for detection of Xylophilus ampelinus. Plant Pathol 56:9–16

    Article  CAS  Google Scholar 

  • Dubinina GA, Rainey FA, Kuenen JG (2005) Genus VII. Macromonas Utermöhl and Koppe in Koppe 1924. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s manual of systematic bacteriology, vol 2C, 2nd edn. Springer, New York, pp 721–724

    Chapter  Google Scholar 

  • Dullius CH, Chen CY, Schink B (2011) Nitrate-dependent degradation of acetone by Alicycliphilus and Paracoccus strains and comparison of acetone carboxylase enzymes. Appl Environ Microbiol 77:6821–6825

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Eisenstadt E, Carlton BC, Brown BJ (1994) Gene mutation. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 297–316

    Google Scholar 

  • Ender PT, Dooley DP, Moore RH (1996) Vascular catheter-related Comamonas acidovorans bacteremia managed with preservation of the catheter. Pediatr Infect Dis J 15:918–920

    Article  CAS  PubMed  Google Scholar 

  • Etchebehere C, Errazquin MI, Dabert P, Moletta R, Muxi L (2001) Comamonas nitrativorans sp. nov., a novel denitrifier isolated from a denitrifying reactor treating landfill leachate. Int J Syst Evol Microbiol 51:977–983

    Article  CAS  PubMed  Google Scholar 

  • Felföldi T, Kéki Z, Sipos R, Márialigeti K, Tindall BJ, Schumann P, Tóth EM (2011) Ottowia pentelensis sp. nov., a floc-forming Betaproteobacterium isolated from an activated sludge system treating coke plant effluent. Int J Syst Evol Microbiol 61:2146–2150

    Article  PubMed  CAS  Google Scholar 

  • Felföldi T, Székely AJ, Gorál R, Barkács K, Scheirich G, András J, Rácz A, Márialigeti K (2010) Polyphasic bacterial community analysis of an aerobic activated sludge removing phenols and thiocyanate from coke plant effluent. Bioresour Technol 101:3406–3414

    Article  PubMed  CAS  Google Scholar 

  • Finneran KT, Johnson CV, Loveley DR (2003) Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III). Int J Syst Evol Microbiol 53:669–673

    Article  CAS  PubMed  Google Scholar 

  • França L, Rainey FA, Nobre MF, Da Costa MS (2006) Tepidicella xavieri gen. nov., sp. nov., a Betaproteobacterium isolated from a hot spring runoff. Int J Syst Evol Microbiol 56:907–912

    Article  PubMed  CAS  Google Scholar 

  • Franzetti F, Cernuschi M, Esposito R, Moroni M (1992) Pseudomonas infections in patients with AIDS and AIDS-related complex. J Intern Med 231:437–443

    Article  CAS  PubMed  Google Scholar 

  • Frette L, Johnsen K, Jørgensen NOG, Nybroe O, Kroer N (2004) Functional characteristics of culturable bacterioplankton from marine and estuarine environments. Int Microbiol 7:219–227

    PubMed  Google Scholar 

  • Gan HM, Chew TH, Tay YL, Lye SF, Yahya A (2012) Genome sequence of Hydrogenophaga sp. strain PBC, a 4-aminobenzenesulfonate-degrading bacterium. J Bacteriol 194:4759–4760

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Gardan L, Dauga C, Prior P, Gillis M, Saddler GS (2000) Acidovorax anthurii sp. nov., a new phytopathogenic bacterium which causes bacterial leaf-spot of anthurium. Int J Syst Evol Microbiol 50:235–246

    Article  CAS  PubMed  Google Scholar 

  • Gardan L, Stead DE, Dauga C, Gillis M (2003) Acidovorax valerianellae sp. nov., a novel pathogen of lamb’s lettuce [Valerianella locusta (L.) Laterr.]. Int J Syst Evol Microbiol 53:795–800

    Article  CAS  PubMed  Google Scholar 

  • Gomila M, Pinhassi J, Falsen E, Moore ERB, Lalucat J (2010) Kinneretia asaccharophila gen. nov., sp. nov., isolated from a freshwater lake, a member of the Rubrivivax branch of the family Comamonadaceae. Int J Syst Evol Microbiol 60:809–814

    Article  CAS  PubMed  Google Scholar 

  • Gong W, Kisiela M, Schilhabel MB, Xiong G, Maser E (2012) Genome sequence of Comamonas testosteroni ATCC 11996, a representative strain involved in steroid degradation. J Bacteriol 194:1633–1634

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Gosink JJ, Staley JT (1995) Biodiversity of gas vacuolated bacteria from Antarctic sea-ice and water. Appl Environ Microbiol 61:3486–3489

    CAS  PubMed Central  PubMed  Google Scholar 

  • Gottlieb Y, Lavy E, Kaufman M, Markovics A, Ghanim M, Aroch I (2012) A novel bacterial symbiont in the nematode Spirocerca lupi. BMC Microbiol 12:133

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Grabovich M, Gavrish E, Kuever J, Lysenko A, Podkopaeva D, Dubinina G (2006) Proposal of Giesbergeria voronezhensis gen. nov., sp. nov. and G. kuznetsovii sp. nov. and reclassification of [Aquaspirillum] anulus, [A.] sinuosum and [A.] giesbergeri as Giesbergeria anulus comb. nov., G. sinuosa comb. nov. and G. giesbergeri comb. nov., and [Aquaspirillum] metamorphum and [A.] psychrophilum as Simplicispira metamorpha gen. nov., comb. nov. and S. psychrophila comb. nov. Int J Syst Evol Microbiol 56:569–576

    Article  CAS  PubMed  Google Scholar 

  • Gray PHH, Thornton HG (1928) Soil bacteria that decompose certain aromatic compounds. Zentralbl Bakteriol Parasitenk Abt 2 73:74–96

    CAS  Google Scholar 

  • Gul M, Ciragil P, Bulbuloglu E, Aral M, Alkis S, Ezberci F (2007) Comamonas testosteroni bacteremia in a patient with perforated acute appendicitis. Acta Microbiol Immunol Hung 54:317–321

    Article  PubMed  Google Scholar 

  • Gumaelius L, Magnusson G, Pettersson B, Dalhammar G (2001) Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge. Int J Syst Evol Microbiol 51:999–1006

    Article  CAS  PubMed  Google Scholar 

  • Hahn MW, Kasalicky V, Jezbera J, Brandt U, Jezberova J, Simek K (2010a) Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. Int J Syst Evol Microbiol 60:1358–1365

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Hahn MW, Kasalicky V, Jezbera J, Brandt U, Simek K (2010b) Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans. Int J Syst Evol Microbiol 60:2946–2950

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Hahn MW, Stadler P, Wu QL, Pöckl M (2004) The filtration acclimatization method for isolation of an important fraction of the not readily cultivable bacteria. J Microbiol Methods 57:379–390

    Article  CAS  PubMed  Google Scholar 

  • Halet D, Defoirdt T, Van Damme P, Vervaeren H, Forrez I, Van de Wiele T, Boon N, Sorgeloos P, Bossier P, Verstraete W (2007) Poly-beta-hydroxybutyrate-accumulating bacteria protect gnotobiotic Artemia franciscana from pathogenic Vibrio campbellii. FEMS Microbiol Ecol 60:363–369

    Article  CAS  PubMed  Google Scholar 

  • Halpern M, Shakèd T, Schumann P (2009) Brachymonas chironomi sp. nov., isolated from a chironomid egg mass, and emended description of the genus Brachymonas. Int J Syst Evol Microbiol 59:3025–3029

    Article  CAS  PubMed  Google Scholar 

  • Hamana K, Sakane T, Yokota A (1994) Polyamine analysis of the genera Aquaspirillum, Magnetospirillum, Oceanospirillum and Spirillum. J Gen Appl Microbiol 40:75–82

    Article  CAS  Google Scholar 

  • Han J, Sun L, Dong X, Cai Z, Sun X, Yang H, Wang Y, Song W (2005) Characterization of a novel plant growth-promoting bacteria strain Delftia tsuruhatensis HR4 both as a diazotroph and a potential biocontrol agent against various plant pathogens. Syst Appl Microbiol 28:66–76

    Article  CAS  PubMed  Google Scholar 

  • Han Y-K, Han K-S, Lee S-C, Kim S (2012) First report of bacterial black spot disease in watermelon caused by Acidovorax valerianellae in Korea. Plant Dis 96:759–760

    Article  Google Scholar 

  • Heulin T, Barakat M, Christen R, Lesourd M, Sutra L, De Luca G, Achouak W (2003) Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from sub-desert soil in Tunisia. Int J Syst Evol Microbiol 53:589–594

    Article  CAS  PubMed  Google Scholar 

  • Heylen K, Lebbe L, De Vos P (2008) Acidovorax caeni sp. nov., a denitrifying species with genetically diverse isolates from activated sludge. Int J Syst Evol Microbiol 58:73–77

    Article  CAS  PubMed  Google Scholar 

  • Himananto O, Thummabenjapone P, Luxananil P, Kumpoosiri M, Hongprayoon R, Kositratana W, Gajanandana O (2011) Novel and highly specific monoclonal antibody to Acidovorax citrulli and development of ELISA-based detection in Cucurbit leaves and seed. Plant Disease 95:1172–1178

    Article  CAS  Google Scholar 

  • Hiraishi A, Hoshino Y, Satoh T (1991) Rhodoferax fermentans gen. nov., sp. nov., a phototrophic purple nonsulfur bacterium previously referred to as the “Rhodocyclus gelatinosus-like” group. Arch Microbiol 155:330–336

    Article  Google Scholar 

  • Hiraishi A, Kahn ST (2003) Application of polyhydroxyalkanoates for denitrification in water and wastewater treatment. Appl Microbiol Biotechnol 61:103–109

    Article  CAS  PubMed  Google Scholar 

  • Hiraishi A, Imhoff JF (2005) Genus IX. Rhodoferax Hiraishi, Hosino and Satoh 1992. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s manual of systematic bacteriology, vol 2C, 2nd edn. Springer, New York, pp 727–732

    Chapter  Google Scholar 

  • Hiraishi A, Shin YK, Sugiyama J (1995) Brachymonas denitrificans gen. nov., sp. nov., an aerobic chemoorganotrophic bacterium which contains rhodoquinones, and evolutionary relationships of rhodoquinone producers to bacterial species with various quinone classes. J Gen Appl Microbiol 41:99–117

    Article  CAS  Google Scholar 

  • Horowitz H, Gilroy S, Feinstein S, Gilardi G (1990) Endocarditis associated with Comamonas acidovorans. J Clin Microbiol 28:143–145

    CAS  PubMed Central  PubMed  Google Scholar 

  • Huang Y, Li H, Rensing C, Zhao K, Johnstone L, Wang G (2012) Genome sequence of the facultative anaerobic arsenite-oxidizing and nitrate-reducing bacterium Acidovorax sp. strain NO1. J Bacteriol 194:1635–1636

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Hylemon PB, Wells JS Jr, Krieg NR, Jannasch HW (1973) The genus Spirillum: a taxonomic study. Int J Syst Bacteriol 23:340–380

    Article  CAS  Google Scholar 

  • Im WT, Liu QM, Lee KJ, Kim SY, Lee ST, Yi TH (2010) Variovorax ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field. Int J Syst Evol Microbiol 60:1565–1569

    Article  CAS  PubMed  Google Scholar 

  • Irgens RL, Gosink JJ, Staley JT (1996) Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica. Int J Syst Bacteriol 46:822–826

    Article  CAS  PubMed  Google Scholar 

  • Irgens RL, Suzuki I, Staley JT (1989) Gas vacuolate bacteria obtained from marine waters of Antarctica. Curr Microbiol 18:261–265

    Article  Google Scholar 

  • Jenni B, Isch C, Aragno M (1989) Nitrogen fixation by new strains of Pseudomonas pseudoflava and related bacteria. J Gen Microbiol 135:461–467

    CAS  Google Scholar 

  • Jeon CO, Park W, Ghiorse WC, Madsen EL (2004) Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. Int J Syst Evol Microbiol 54:93–97

    Article  CAS  PubMed  Google Scholar 

  • Jin L, Kim KK, Ahn CY, Oh HM (2012) Variovorax defluvii sp. nov., isolated from sewage. Int J Syst Evol Microbiol 62:1779–1783

    Article  CAS  PubMed  Google Scholar 

  • Jørgensen NOG, Brandt KK, Nybroe O, Hansen M (2009) Delftia lacustris sp. nov., a peptidoglycan-degrading bacterium from fresh water, and emended description of Delftia tsuruhatensis as a peptidoglycan-degrading bacterium. Int J Syst Evol Microbiol 59:2195–2199

    Article  PubMed  CAS  Google Scholar 

  • Kahn ST, Horiba Y, Takahashi N, Hiraishi A (2007) Activity and community composition of denitrifying bacteria in poly(3-hydroxybutyrate-co-3-hydroxyvalerate)-using solid-phase denitrification processes. Microbe Environ 22:20–31

    Article  Google Scholar 

  • Kämpfer P, Busse HJ, Falsen E (2006) Polaromonas aquatica sp. nov., isolated from tap water. Int J Syst Evol Microbiol 56:605–608

    Article  PubMed  CAS  Google Scholar 

  • Kämpfer P, Schulze R, Jäckel U, Malik KA, Amann R, Spring S (2005) Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 55:341–344

    Article  PubMed  CAS  Google Scholar 

  • Kämpfer P, Thummes K, Chu HI, Tan CC, Arun AB, Chen WM, Lai WA, Shen FT, Rekha PD, Young CC (2008) Pseudacidovorax intermedius gen. nov., sp. nov., a novel nitrogen-fixing Betaproteobacterium isolated from soil. Int J Syst Evol Microbiol 58:491–495

    Article  PubMed  CAS  Google Scholar 

  • Kasalicky V (2012) Ecophysiological characteristics of key members of Betaproteobacteria in freshwater bacterioplankton. PhD thesis, Series No. 7. University of South Bohemia, Faculty of Science, School of Doctoral Studies in Biological Sciences, České Budějovice, Czech Republic, 132 pp

    Google Scholar 

  • Kasalicky V, Jezbera J, Simek K, Hahn MW (2010) Limnohabitans planktonicus sp. nov., and Limnohabitans parvus sp. nov., novel planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans. Int J Syst Evol Microbiol 60:2710–2714

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Khan ST, Hiraishi A (2002) Diaphorobacter nitroreducens gen. nov., sp. nov., a poly(3-hydroxybutyrate)-degrading denitrifying bacterium isolated from activated sludge. J Gen Appl Microbiol 48:299–308

    Article  CAS  PubMed  Google Scholar 

  • Khardenavis AA, Kapley A, Purohit HJ (2007) Simultaneous nitrification and denitrification by diverse Diaphorobacter sp. Appl Microbiol Biotechnol 77:403–409

    Article  CAS  PubMed  Google Scholar 

  • Kim SJ, KIM YS, Weon HY, Anandham R, Noh HJ, Kwon SW (2010) Xenophilus aerolatus sp. nov., isolated from air. Int J Syst Evol Microbiol 60:327–330

    Article  PubMed  CAS  Google Scholar 

  • Kim KH, Ten LN, Liu QM, Im WT, Lee ST (2008) Comamonas granuli sp. nov., isolated from granules used in a wastewater treatment plant. J Microbiol 46:390–395

    Article  CAS  PubMed  Google Scholar 

  • Kim SJ, Weon HY, Kim YS, Moon JY, Seok SJ, Hong SB, Kwon SW (2012) Caenimonas terrae sp. nov., isolated from a soil sample in Korea, and emended description of the genus Caenimonas Ryu et al. 2008. J Microbiol 50:864–868

    Article  PubMed  Google Scholar 

  • Kim BY, Weon HY, Yoo SH, Lee SY, Kwon SW, Go SJ, Stackebrandt E (2006) Variovorax soli sp. nov., isolated from greenhouse soil. Int J Syst Evol Microbiol 56:2899–2901

    Article  CAS  PubMed  Google Scholar 

  • Kjeldsen KU, Bataillon T, Pinel N, De Mita S, Lund MB, Panitz F, Bendixen C, Stahl DA, Schramm A (2012) Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms. Genome Biol Evol 4:307–315

    Article  PubMed Central  PubMed  CAS  Google Scholar 

  • Klankeo P, Nopcharoenkul W, Pinyakong O (2009) Two novel pyrene-degrading Diaphorobacter sp. and Pseudoxanthomonas sp. isolated from soil. J Biosci Bioeng 108:488–495

    Article  CAS  PubMed  Google Scholar 

  • Krieg NR (1976) Biology of the chemoheterotrophic spirilla. Bacteriol Rev 40:55–115

    CAS  PubMed Central  PubMed  Google Scholar 

  • Kulla HG, Krieg R, Zimmermann T, Leisinger T (1984) Experimental evolution of azo dye-degrading bacteria. In: Klug MJ, Reddy CA (eds) Current perspectives in microbial ecology. American Society for Microbiology, Washington, DC, pp 663–667

    Google Scholar 

  • Lair MI, Bentolila S, Grenet D, Cahen P, Honderlick P (1996) Oerskovia turbata and Comamonas acidovorans bacteremia in a patient with AIDS. Eur J Clin Microbiol Infect Dis 15:424–426

    Article  CAS  PubMed  Google Scholar 

  • Lalucat J, Parés R, Schlegel HG (1982) Pseudomonas taeniospiralis sp. nov., an R-body-containing hydrogen bacterium. Int J Syst Bacteriol 32:332–338

    Article  Google Scholar 

  • Le Moal G, Paccalin M, Breux JP, Roblot F, Roblot P, Becq-Giraudon B (2001) Central venous catheter-related infection due to Comamonas testosteroni in a woman with breast cancer. Scand J Infect Dis 33:627–628

    Article  PubMed  Google Scholar 

  • Lee SM, Kim MK, Lee JL, Wee WR, Lee JH (2008) Experience of Comamonas acidovorans keratitis with delayed onset and treatment response in immunocompromised cornea. Korean J Ophthalmol 22:49–52

    Article  PubMed Central  PubMed  Google Scholar 

  • Lee N, Cellamare CM, Bastianutti C, Rossello-Mora R, Kämpfer P, Ludwig W, Schleifer KH, Stante L (2004) Emended description of the species Lampropedia hyaline. Int J Syst Evol Microbiol 54:1709–1715

    Article  CAS  PubMed  Google Scholar 

  • Leifson E (1962a) Pseudomonas spinosa n. sp. Int Bull Bacteriol Nomen Tax 12:89–92

    Article  Google Scholar 

  • Leifson E (1962b) The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas. Int Bull Bacteriol Nomen Tax 12:161–170

    Article  Google Scholar 

  • Leifson E (1962c) The bacterial flora of distilled and stored water. I. General observations, techniques and ecology. Int Bull Bacteriol Nomen Tax 12:133–153

    Article  Google Scholar 

  • Lema I, Gómez-Torreiro M, Rodríguez-Ares MT (2001) Comamonas acidovorans keratitis in a hydrogel contact lens wearer. CLAO J 27:55–56

    CAS  PubMed  Google Scholar 

  • Leta S, Gumaelius L, Assefa F, Dalhammar G (2004) Identification of efficient denitrifying bacteria from tannery wastewaters in Ethiopia and a study of the effects of chromium III and sulfide on their denitrification rate. World J Microbiol Biotechnol 20:405–411

    Article  CAS  Google Scholar 

  • Li D, Rothballer M, Schmid M, Esperschütz J, Hartmann A (2011) Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium. Int J Syst Evol Microbiol 61:2589–2594

    Article  CAS  PubMed  Google Scholar 

  • Li D, Rothballer M, Engel M, Hoser J, Schmidt T, Kuttler C, Schmid M, Schloter M, Hartmann A (2012a) Phenotypic variation in Acidovorax radicis N35 influences plant growth promotion. FEMS Microbiol Ecol 7:751–762

    Article  CAS  Google Scholar 

  • Li H, Xing P, Wu QL (2012b) Characterization of the bacterial community composition in a hypoxic zone induced by Microcystis blooms in Lake Taihu, China. FEMS Microbiol Ecol 79:773–784

    Article  CAS  PubMed  Google Scholar 

  • Liang B, Yang CL, Gong MB, Zhao YF, Zhang J, Zhu CX, Jiang JD, Li SP (2011) Adsorption and degradation of triazophos, chlorpyrifos and their main hydrolytic metabolites in paddy soil from Chaohu Lake, China. J Environ Manage 92:2229–2234

    Article  CAS  PubMed  Google Scholar 

  • Lovley DR, Giovannoni SJ, White DC, Champine JE, Philips EJP, Gorby YA, Goodwin S (1993) Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Arch Microbiol 159:336–344

    Article  CAS  PubMed  Google Scholar 

  • Lu SP, Ryu SH, Chung BS, Chung YR, Park W, Jeon CO (2007) Simplicispira limi sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 57:31–34

    Article  CAS  PubMed  Google Scholar 

  • Lund MB, Schätzle S, Schramm A, Kjeldsen KU (2012) Verminephrobacter aporrectodeae sp. nov. subsp. tuberculatae and subsp. caliginosae, the specific nephridial symbionts of the earthworms Aporrectodea tuberculata and A. caliginosa. Antonie Van Leeuwenhoek Int. J Gen Mol Microbiol 101:507–514

    Google Scholar 

  • Lütke-Eversloh T, Elbanna K, Cnockaert MC, Mergaert J, Swings J, Manaia CM, Steinbüchel A (2004) Caenibacterium thermophilum is a later synonym of Schlegelella thermodepolymerans. Int J Syst Evol Microbiol 54:1933–1935

    Article  PubMed  Google Scholar 

  • Ma JY, Quan QC, Yang ZF, Li AJ (2012) Biodegradation of a mixture of 2,4-dichlorophenoxyacetic acid and multiple chlorophenols by aerobic granules cultivated through plasmid pJP4 mediated bioaugmentation. Chem Engin J 181:144–151

    Article  CAS  Google Scholar 

  • Ma YF, Zhang Y, Zhang JY, Chen DW, Zhu Y, Zheng H, Wang SY, Jiang CY, Zhao GP, Liu SJ (2009) The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl Environ Microbiol 75:6812–6819

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Madigan MT, Jung DO, Woese CR, Achenbach LA (2000) Rhodoferax antarcticus sp. nov., a moderately psychrophilic purple nonsulfur bacterium isolated from an Antarctic microbial mat. Arch Microbiol 173:269–277

    Article  CAS  PubMed  Google Scholar 

  • Malkan AD, Strollo W, Scholand SJ, Dudrick SJ (2009) Implanted-port catheter-related sepsis caused by Acidovorax avenae and methicillin-sensitive Staphylococcus aureus. J Clin Microbiol 47:3358–3361

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Manaia CM, Nunes OC, Nogales B (2003) Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge. Int J Syst Evol Microbiol 53:1375–1382

    Article  CAS  PubMed  Google Scholar 

  • Margesin R, Spröer C, Zhang DC, Busse HJ (2012) Polaromonas glacialis sp. nov. and Polaromonas cryoconiti sp. nov., isolated from alpine glacier cryoconite. Int J Syst Evol Microbiol 62:2662–2668

    Article  CAS  PubMed  Google Scholar 

  • Mechichi T, Stackebrandt E, Fuchs G (2003) Alicycliphilus denitrificans gen. nov. sp. nov., a cyclohexanol-degrading, nitrate-reducing Betaproteobacterium. Int J Syst Evol Microbiol 53:147–152

    Article  CAS  PubMed  Google Scholar 

  • Meyer O, Schlegel HG (1983) Biology of aerobic carbon monoxide-oxidizing bacteria. Ann Rev Microbiol 37:227–310

    Article  Google Scholar 

  • Michaud L, Caruso C, Mangano S, Interdonato F, Bruni V, Lo Giudice A (2012) Predominance of Flavobacterium, Pseudomonas, and Polaromonas within the prokaryotic community of freshwater shallow lakes in the northern Victoria Land, East Antarctica. FEMS Microbiol Ecol 82:391–404

    Article  CAS  PubMed  Google Scholar 

  • Miño de Kaspar H, Grasbon T, Kampik A (2000) Automated surgical equipment requires routine disinfection of vacuum control manifold to prevent postoperative endophthalmitis. Ophthalmology 107:685–690

    Article  PubMed  Google Scholar 

  • Miwa H, Ahmed I, Yoon J, Yokota A, Fujiwara T (2008) Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil. Int J Syst Evol Microbiol 58:286–289

    Article  CAS  PubMed  Google Scholar 

  • Mohn WW (1995) Bacteria obtained from a sequencing batch reactor that are capable of growth on dehydroabietic acid. Appl Environ Microbiol 61:2145–2150

    CAS  PubMed Central  PubMed  Google Scholar 

  • Murray RGE (2005) Genus VI. Lampropedia Schroeter 1886. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s manual of systematic bacteriology, vol 2C, 2nd edn. Springer, New York, pp 716–721

    Chapter  Google Scholar 

  • Narayan KD, Pandey SK, Das SK (2010) Characterization of Comamonas thiooxidans sp. nov., and comparison of thiosulfate oxidation with Comamonas testosteroni and Comamonas composti. Curr Microbiol 61:248–253

    Article  CAS  PubMed  Google Scholar 

  • Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S (2011) A guide to the natural history of freshwater lake bacteria. Microbiol Mol Biol Rev 75:14–49

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Nseir W, Khateeb J, Awawdeh M, Ghali M (2011) Catheter-related bacteremia caused by Comamonas testosteroni in a hemodialysis patient. Hemodial Int 15:293–296

    Article  PubMed  Google Scholar 

  • Ohtsubo Y, Maruyama F, Mitsui H, Nagata Y, Tsuda M (2012) Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader. J Bacteriol 194:6970–6971

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Oosterkamp MJ, Veuskens T, Plugge CM, Langenhoff AA, Gerritse J, van Berkel WJ, Pieper DH, Junca H, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Smidt H, Stams AJ (2011) Genome sequences of Alicycliphilus denitrificans strains BC and K601T. J Bacteriol 193:5028–5029

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Palleroni NJ, Kunisawa R, Contopoulou R, Doudoroff M (1973) Nucleic acid homologies in the genus Pseudomonas. Int J Syst Bacteriol 23:333–339

    Article  CAS  Google Scholar 

  • Palleroni NJ (1984) Genus I. Pseudomonas Migula 1894. In: Krieg NR, Holt JG (eds) Bergey’s manual of systematic bacteriology, vol 1. Williams & Wilkins, Baltimore, pp 141–199

    Google Scholar 

  • Palleroni NJ, Doudoroff M (1972) Some properties and taxonomic subdivision of the genus Pseudomonas. Annu Rev Phytopathol 10:73–100

    Article  Google Scholar 

  • Pandey SK, Narayan KD, Bandyopadhyay S, Nayak KC, Das SK (2009) Thiosulfate oxidation by Comamonas sp. S23 isolated from a sulphur spring. Curr Microbiol 58:516–521

    Article  CAS  PubMed  Google Scholar 

  • Pelz O, Cifuentes LA, Hammer BT, Kelley CA, Coffin RB (1998) Tracing the assimilation of organic compounds using δ13C analysis of unique amino acids in the bacterial peptidoglycan cell wall. FEMS Microbiol Ecol 25:229–240

    CAS  Google Scholar 

  • Pérez-Pantoja D, Donoso R, Agulló L, Córdova M, Seeger M, Pieper DH, González B (2012) Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Environ Microbiol 14:1091–1117

    Article  PubMed  CAS  Google Scholar 

  • Pfennig N (1978) Rhodocyclus purpureus gen. nov. and sp. nov., a ring shaped, vitamin B12-requiring member of the Rhodospirillaceae. Int J Syst Bacteriol 28:283–288

    Article  CAS  Google Scholar 

  • Pham VH, Park SJ, Roh Y, Roh DH, Rhee SK (2009) Diaphorobacter oryzae sp. nov., isolated from a thiosulfate-oxidizing enrichment culture. Int J Syst Evol Microbiol 59:218–221

    Article  CAS  PubMed  Google Scholar 

  • Pinel N, Davidson SK, Stahl DA (2008) Verminephrobacter eiseniae gen. nov., sp. nov., a nephridial symbiont of the earthworm Eisenia foetida (Savigny). Int J Syst Evol Microbiol 58:2147–2157

    Article  CAS  PubMed  Google Scholar 

  • Ramana CV, Sasikala C (2009) Albidoferax, a new genus of Comamonadaceae and reclassification of Rhodoferax ferrireducens (Finneran et al., 2003) as Albidoferax ferrireducens comb. nov. J Gen Appl Microbiol 55:301–304

    Article  CAS  PubMed  Google Scholar 

  • Reasoner DJ, Geldreich EE (1985) A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49:1–7

    CAS  PubMed Central  PubMed  Google Scholar 

  • Reddy AK, Murthy SI, Jalali S, Gopinathan U (2009) Post-operative endophthalmitis due to an unusual pathogen, Comamonas testosteroni. J Med Microbiol 58:374–375

    Article  PubMed  Google Scholar 

  • Robert-Gero M, Poiret M, Stanier RY (1969) The function of the β-ketoadipate pathway in Pseudomonas acidovorans. J Gen Microbiol 57:207–214

    Article  CAS  PubMed  Google Scholar 

  • Rouf MA, Stokes JL (1964) Morphology, nutrition and physiology of Sphaerotilus discophorus. Arch Microbiol 49:132–149

    CAS  Google Scholar 

  • Rouvière PE, Chen MW (2003) Isolation of Brachymonas petroleovorans CHX, a novel cyclohexane-degrading β-proteobacterium. FEMS Microbiol Lett 227:101–106

    Article  PubMed  CAS  Google Scholar 

  • Ryu SH, Lee DS, Park M, Wang Q, Jang HH, Park W, Jeon CO (2008) Caenimonas koreensis gen. nov., sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 58:1064–1068

    Article  CAS  PubMed  Google Scholar 

  • Sakane T, Yokota A (1994) Chemotaxonomic investigation of heterotrophic, aerobic and microaerophilic Spirilla, the genera Aquaspirillum, Magnetospirillum and Oceanospirillum. Syst Appl Microbiol 17:128–134

    Article  CAS  Google Scholar 

  • Schaad NW, Postnikova E, Sechler A, Claflin LE, Vidaver AK, Jones JB, Agarkova I, Ignatov A, Dickstein E, Ramundo BA (2008) Reclassification of subspecies of Acidovorax avenae as A. avenae (Manns 1905) emend., A. cattleyae (Pavarino, 1911) comb. nov., A. citrulli Schaad et al. 2009, 1978) comb. nov., and proposal of A. oryzae sp. nov. Syst Appl Microbiol 31:434–446

    Article  CAS  PubMed  Google Scholar 

  • Schlegel HG, Kaltwasser H, Gottschalk G (1961) A submersion method for culture of hydrogen-oxidizing bacteria: growth physiological studies. Arch Mikrobiol 38:209–222

    Article  CAS  PubMed  Google Scholar 

  • Schulze R, Spring S, Amann R, Huber I, Ludwig W, Schleifer KH, Kämpfer P (1999) Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. nov. Syst Appl Microbiol 22:204–214

    Article  Google Scholar 

  • Schroeter J (1886) In: Cohn F (ed) Kryptogamenflora von Schlesien. Band 3, Heft 3, Pilze. J.U. Kern’s Verlag, Breslau, pp 1–814

    Google Scholar 

  • Shetty A, Barnes RA, Healy B, Groves P (2005) A case of sepsis caused by Acidovorax. J Infect 51:e171–e172

    Article  CAS  PubMed  Google Scholar 

  • Shigematsu T, Yumihara K, Ueda Y, Numaguchi M, Morimura S, Kida K (2003) Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge. Int J Syst Evol Microbiol 53:1479–1483

    Article  CAS  PubMed  Google Scholar 

  • Siebor E, Llanes C, Lafon I, Ogier-Desserrey A, Duez JM, Pechinot A, Caillot D, Grandjean M, Sixt N, Neuwirth C (2007) Presumed pseudobacteremia outbreak resulting from contamination of proportional disinfectant dispenser. Eur J Clin Microbiol Infect Dis 26:195–198

    Article  CAS  PubMed  Google Scholar 

  • Simek K, Pernthaler J, Weinbauer MG, Hornak K, Dolan JR, Nedoma J, Masin M, Amann R (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67:2723–2733

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Sizova M, Panikov N (2007) Polaromonas hydrogenivorans sp. nov., a psychrotolerant hydrogen-oxidizing bacterium from Alaskan soil. Int J Syst Evol Microbiol 57:616–619

    Article  CAS  PubMed  Google Scholar 

  • Skerman VBD, McGowan V, Sneath PHA (1980) Approved lists of bacterial names. Int J Syst Bacteriol 30:225–420

    Article  Google Scholar 

  • Smith MD, Gradon JD (2003) Bacteremia due to Comamonas species possibly associated with exposure to tropical fish. South Med J 96:815–817

    Article  PubMed  Google Scholar 

  • Spring S, Jäckel U, Wagner M, Kämpfer P (2004) Ottowia thiooxydans gen. nov., sp. nov., a novel facultatively anaerobic, N2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov. Int J Syst Evol Microbiol 54:99–106

    Article  CAS  PubMed  Google Scholar 

  • Spring S, Wagner M, Schumann P, Kämpfer P (2005) Malikia granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphate-accumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikia spinosa comb. nov. Int J Syst Evol Microbiol 55:621–629

    Article  CAS  PubMed  Google Scholar 

  • Stanier RY, Palleroni NJ, Doudoroff M (1966) The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43:159–271

    Article  CAS  PubMed  Google Scholar 

  • Stonecipher KG, Jensen HG, Kastl PR, Faulkner A, Rowsey JJ (1991) Ocular infections associated with Comamonas acidovorans. Am J Ophthalmol 112:46–49

    Article  CAS  PubMed  Google Scholar 

  • Streger S, Vainberg HS, Dong HL, Hatzinger PB (2002) Enhancing transport of Hydrogenophaga flava ENV735 for bioaugmentation of aquifers contaminated with methyl tert-butyl ether. Appl Eviron Microbiol 68:5571–5579

    Article  CAS  Google Scholar 

  • Sun LN, Zhang J, Chen Q, He J, Li QF, Li SP (2013) Comamonas jiangduensis sp. nov., a biosurfactant-producing bacterium isolated from agricultural soil. Int J Syst Evol Microbiol 63(Pt 6):2168–2173. doi:10.1099/ijs.0.045716-0

    Article  CAS  PubMed  Google Scholar 

  • Sun WJ, Sierra-Alvarez R, Fernandez N, Sanz JL, Amils R, Legatzki A, Maier RM, Field JA (2009) Molecular characterization and in situ quantification of anoxic arsenite-oxidizing denitrifying enrichment cultures. FEMS Microbiol Ecol 68:72–85

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Tago Y, Yokota A (2004) Comamonas badia sp. nov., a floc-forming bacterium isolated from activated sludge. J Gen Appl Microbiol 50:243–248

    Article  CAS  PubMed  Google Scholar 

  • Takeda M, Kamagata Y, Ghiorse WC, Hanada S, Koizumi J (2002) Caldimonas manganoxidans gen. nov., sp. nov., a poly(3-hydroxybutyrate)-degrading, manganese-oxidizing thermophile. Int J Syst Evol Microbiol 52:895–900

    CAS  PubMed  Google Scholar 

  • Tamaoka J, Ha D, Komagata K (1987) Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an emended description of the genus Comamonas. Int J Syst Bacteriol 37:52–59

    Article  Google Scholar 

  • Taylor BF, Curry RW, Corcoran EF (1981) Potential for biodegradation of phthalic acid esters in marine regions. Appl Environ Microbiol 42:590–595

    CAS  PubMed Central  PubMed  Google Scholar 

  • Terasaki Y (1970) Ueber die Anhaüfung von Süsswasserun Meerwasser vorkommenden Spirillum. Bull Suzugamine Women’s Coll Nat Sci 15:1–7

    Google Scholar 

  • Terasaki Y (1979) Transfer of five species and two subspecies of Spirillum to other genera (Aquaspirillum and Oceanospirillum), with emended descriptions of the species and subspecies. Int J Syst Bacteriol 29:130–144

    Article  Google Scholar 

  • Thiele K, Smalla K, Kropf KS, Rabenstein F (2012) Detection of Acidovorax valerianellae, the causing agent of bacterial leaf spots in corn salad [Valerianella locusta (L.) Laterr.], in corn salad seeds. Lett Appl Microbiol 54:112–118

    Article  CAS  PubMed  Google Scholar 

  • Thomas P, Soly TA (2009) Endophytic bacteria associated with growing shoot tips of banana (Musa sp.) cv. Grand Naine and the affinity of endophytes to the host. Microb Ecol 58:952–964

    Article  CAS  PubMed  Google Scholar 

  • Tschech A, Pfennig N (1984) Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137:163–167

    Article  CAS  Google Scholar 

  • Tsui TL, Tsao SM, Liu KS, Chen TY, Wang YL, Teng YH, Lee YT (2011) Comamonas testosteroni infection in Taiwan: reported two cases and literature review. J Microbiol Immunol Infect 44:67–71

    Article  PubMed  Google Scholar 

  • Utermöhl H, Koppe F (1924) Genus Macromonas. In: Koppe F (ed) Die Schlammflora der ostholsteinischen Seen und des Bodensees, vol 14, Arch Hydrobiol., pp 619–672

    Google Scholar 

  • Vaneechoutte M, Janssens M, Avesani V, Delmée M, Deschaght P (2013) Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to A. avenae. Int J Syst Evol Microbiol 63(Pt 6):2203–2206. doi:10.1099/ijs.0.046102-0

    Article  CAS  PubMed  Google Scholar 

  • Volk M, Meyer O, Frunzke K (1994) Metabolic relationship between the CO dehydrogenase molybdenum cofactor and the excretion of urothione by Hydrogenophaga pseudoflava. Eur J Biochem 225:1063–1071

    Article  CAS  PubMed  Google Scholar 

  • Wagner M, Amann R, Kämpfer P, Assmus B, Hartmann A, Hutzler P, Springer N, Schleifer KH (1994) Identification and in situ detection of gram-negative filamentous bacteria in activated sludge. Syst Appl Microbiol 17:405–417

    Article  Google Scholar 

  • Wang L, An D-S, Kim S-G, Jin F-X, Kim S-C, Lee S-T, Im W-T (2012) Ramlibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity. J Microbiol Biotechnol 22:311–315

    Article  CAS  PubMed  Google Scholar 

  • Wauters G, De Baere T, Willems A, Falsen E, Vaneechoutte M (2003) Description of Comamonas aquatica comb. nov. and Comamonas kerstersii sp. nov. for two subgroups of Comamonas terrigena and emended description of Comamonas terrigena. Int J Syst Evol Microbiol 53:859–862

    Article  CAS  PubMed  Google Scholar 

  • Weelink SAB, Tan NCG, ten Broeke H, van den Kieboom C, van Doesburg W, Langenhoff AAM, Gerritse J, Junca H, Stams AJM (2008) Isolation and characterization of Alicycliphilus denitrificans strain BC, which grows on benzene with chlorate as the electron acceptor. Appl Environ Microbiol 74:6672–6681

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Wen A, Fegan M, Hayward C, Chakraborty S, Sly LI (1999) Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov. Int J Syst Bacteriol 49:567–576

    Article  CAS  PubMed  Google Scholar 

  • Weon HY, Yoo SH, Hong SB, Kwon SW, Stackebrandt E, Go SJ, Koo BS (2008) Polaromonas jejuensis sp. nov., isolated from soil in Korea. Int J Syst Evol Microbiol 58:1525–1528

    Article  CAS  PubMed  Google Scholar 

  • Widdel F, Kohring GW, Mayer F (1983) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov., sp. nov., and Desulfonema magnum sp. nov. Arch Microbiol 134:286–294

    Article  CAS  Google Scholar 

  • Willems A, Busse J, Goor M, Pot B, Falsen E, Jantzen E, Hoste B, Gillis M, Kersters K, Auling G, De Ley J (1989) Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and “Pseudomonas carboxydoflava”) and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int J Syst Bacteriol 39:319–333 (aquaticum, E. Falsen group 10, and other clinical isolates. Int J Syst Bacteriol 41:427–444)

    Article  CAS  Google Scholar 

  • Willems A, De Ley J, Gillis M, Kersters K (1991a) Comamonadaceae, a new family encompassing the acidovorans rRNA complex, including Variovorax paradoxus gen. nov., comb. nov., for Alcaligenes paradoxus (Davis) 1969. Int J Syst Bacteriol 41:445–450

    Article  Google Scholar 

  • Willems A, Gillis M (2005) Genus II. Acidovorax. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s manual of systematic bacteriology, vol 2C, 2nd edn. Springer, New York, pp 696–703

    Chapter  Google Scholar 

  • Willems A, Falsen E, Pot B, Jantzen E, Hoste B, Vandamme P, Gillis M, Kersters K, De Ley J (1990) Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov. Int J Syst Bacteriol 40:384–398

    Article  CAS  PubMed  Google Scholar 

  • Willems A, Gillis M, De Ley J (1991b) Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov., comb. nov., and phylogenetic relationships with Leptothrix, Sphaerotilus natans, Pseudomonas saccharophila, and Alcaligenes latus. Int J Syst Bacteriol 41:65–73

    Article  Google Scholar 

  • Willems A, Pot B, Falsen E, Vandamme P, Gillis M, Kersters K, De Ley J (1991c) Polyphasic taxonomic study of the emended genus Comamonas: relationship to Aquaspirillum aquaticum, E. Falsen group 10, and other clinical isolates. Int J Syst Bacteriol 41:427–444

    Article  Google Scholar 

  • Willems A, Gillis M, Kersters K, Van den Broecke L, De Ley J (1987) Transfer of Xanthomonas ampelina Panagopoulos 1969 to a new genus, Xylophilus gen. nov., as Xylophilus ampelinus (Panagopoulos 1969) comb. nov. Int J Syst Bacteriol 37:422–430

    Article  Google Scholar 

  • Willems A, Goor M, Thielemans S, Gillis M, Kersters K, De Ley J (1992) Transfer of several phytopathogenic Pseudomonas species to Acidovorax as Acidovorax avenae subsp. avenae subsp. nov. comb. nov., Acidovorax avenae subsp. citrulli, Acidovorax avenae subsp. cattleyae, and Acidovorax konjaci. Int J Syst Bacteriol 42:107–119

    Article  CAS  PubMed  Google Scholar 

  • Williams MA, Rittenberg SC (1957) A taxonomic study of the genus Spirillum Ehrenberg. Int Bull Bacteriol Nomencl Taxon 7:49–111

    Google Scholar 

  • Williams RAD, Da Costa MS (1992) The genus Thermus and related microorganisms. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The Prokaryotes, 2nd edn. Springer, New York, pp 3745–3753

    Chapter  Google Scholar 

  • Wu CY, Zhuang L, Zhou SG, Li FB, Li XM (2009) Fe(III)-enhanced anaerobic transformation of 2,4-dichlorophenoxyacetic acid by an iron-reducing bacterium Comamonas koreensis CY01. FEMS Microbiol Ecol 71:106–113

    Article  CAS  Google Scholar 

  • Wu WZ, Yang LH, Wang JL (2013) Denitrification using PBS as carbon source and biofilm support in a packed-bed bioreactor. Environ Sci Pollut Res 20:333–339

    Article  CAS  Google Scholar 

  • Xie GL, Zhang GQ, Liu H, Lou MM, Tian WX, Li B, Zhou XP, Zhu B, Jin GL (2011) Genome sequence of the rice-pathogenic bacterium Acidovorax avenae subsp. avenae RS-1. J Bacteriol 193:5013–5014

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL (2009) The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environ Microbiol 11:2253–2270

    Article  CAS  PubMed  Google Scholar 

  • Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R (2010) Update of the all-species living tree project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291–299

    Article  CAS  PubMed  Google Scholar 

  • Yoon JH, Kang SJ, Oh TK (2006) Variovorax dokdonensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 56:811–814

    Article  CAS  PubMed  Google Scholar 

  • Yoon JH, Kang SJ, Ryu SH, Jeon CO, Oh TK (2008) Hydrogenophaga bisanensis sp. nov., isolated from wastewater of a textile dye works. Int J Syst Evol Microbiol 58:393–397

    Article  CAS  PubMed  Google Scholar 

  • Young CC, Chou JH, Arun AB, Yen WS, Sheu SY, Shen FT, Lai WA, Rekha PD, Chen WM (2008) Comamonas composti sp. nov., isolated from food waste compost. Int J Syst Evol Microbiol 58:251–256

    Article  CAS  PubMed  Google Scholar 

  • Yu XY, Li YF, Zheng JW, Li Y, Li L, He J, Li SP (2011) Comamonas zonglianii sp. nov., isolated from phenol-contaminated soil. Int J Syst Evol Microbiol 61:255–258

    Article  CAS  PubMed  Google Scholar 

  • Zein MM, Suidan MT, Venosa AD (2004) MtBE biodegradation in a gravity flow, high-biomass retaining bioreactor. Environ Sci Technol 38:3449–3456

    Article  CAS  PubMed  Google Scholar 

  • Zeng Y, Kasalicky V, Simek K, Koblizek M (2012) Genome sequences of two freshwater Betaproteobacterial isolates, Limnohabitans species strains Rim28 and Rim47, indicate their capabilities as both photoautotrophs and ammonia oxidizers. J Bacteriol 194:6302–6303

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Zhang LH, Chen SF (2012) Pseudacidovorax intermedius NH-1, a novel marine nitrogen-fixing bacterium isolated from the South China Sea. World J Microbiol Biotech 28:2839–2847

    Article  CAS  Google Scholar 

  • Zhang J, Wang YQ, Zhou SG, Wu CY, He J, Li FB (2013a) Comamonas guangdongensis sp. nov., isolated from subterranean forest sediment, and emended description of the genus Comamonas. Int J Syst Evol Microbiol 63:809–814

    Article  CAS  PubMed  Google Scholar 

  • Zhang T, Ren HF, Liu Y, Zhu BL, Liu ZP (2010) A novel degradation pathway of chloroaniline in Diaphorobacter sp PCA039 entails initial hydroxylation. World J Microbiol Biotechnol 26:665–673

    Article  CAS  Google Scholar 

  • Zhang W-Y, Fang M-X, Zhang W-W, Xiao C, Zhang X-Q, Yu Z-P, Zhu X-F, Wu M (2013b) Extensimonas vulgaris gen. nov., sp. nov., a novel member of the family Comamonadaceae. Int J Syst Evol Microbiol 63(Pt 6):2062–2068. doi:10.1099/ijs.0.038158-0

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Anne Willems .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag Berlin Heidelberg

About this entry

Cite this entry

Willems, A. (2014). The Family Comamonadaceae. In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30197-1_238

Download citation

Publish with us

Policies and ethics