Abstract
We study small-polaron motion through guanine-based materials. The temperature dependence and anisotropy of charge carrier (hole) transport in crystalline guanine is investigated by employing the Kubo formalism and calculating the hole mobilities with ab initio DFT material parameters. We discuss our findings in relation to transport pathways in DNA-based structures like guanine quadruplexes and ribbons which are considered to play a major role in DNA-based nanoelectronics. The mobility results are interpreted by help of a novel visualization method for transport channels which we derive from overlapping wavefunctions. An analysis of coherent and incoherent contributions to the mobility shows that even in materials with high purity and long-range order like crystals only incoherent phonon-assisted hopping occurs at room temperature.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Alexandre, S.S., Artacho, E., Soler, J.M., Chacham, H.: Small Polarons in Dry DNA. Phys. Rev. Lett. 91, 108105 (2003)
Beleznay, F.B., Bogár, F., Ladik, J.: Charge carrier mobility in quasi-one-dimensional systems: Application to a guanine stack. J. Chem. Phys. 119, 5690 (2003)
Bogár, F., Ladik, J.: Correlation corrected energy bands of nucleotide base stacks. Chem. Phys. 237, 273 (1998)
Bongiorno, A.: Energy landscape of an electron hole in hydrated dna. J. Phys. Chem. B 112, 13,945 (2008)
Braun, E., Eichen, Y., Sivan, U., Ben-Yoseph, G.: DNA-templated assembly and electrode attachment of a conducting silver wire. Nature 391, 775 (1998)
Brédas, J.L., Calbert, J.P., da Silva Filho, D.A., Cornil, J.: Organic semiconductors: A theoretical characterization of the basic parameters governing charge transport. Proc. Natl. Acad. Sci. USA 99, 5804 (2002)
Cohen, H., Nogues, C., Naaman, R., Porath, D.: Direct measurement of electrical transport through single DNA molecules of complex sequence. Proc. Nat. Acad. Sci. 102, 11,589 (2005)
Coropceanu, V., Cornil, J., da Silva Filho, D.A., Olivier, Y., Silbey, R., Brédas, J.L.: Charge transport in organic semiconductors. Chem. Rev. 107, 926 (2007)
Di Felice, R., Calzolari, A., Garbesi, A., Alexandre, S.S., Soler, J.M.: Strain-dependence of electronic properties in periodic quadrupel helical g4-wires. J. Phys. Chem. B 109, 22,301 (2005)
Di Felice, R., Calzolari, A., Molinari, E., Garbesi, A.: Ab initio study of model guanine assemblies: The role of π-π coupling and band transport. Phys. Rev. B 65, 045104 (2001)
Eley, D.D., Spivey, D.I.: Semiconductivity of organic substances. Trans. Faraday Soc. 58, 411 (1962)
Endres, R.G., Cox, D.L., Singh, R.R.P.: Colloquium: The quest for high-conductance DNA. Rev. Mod. Phys. 76, 195 (2004)
Grozema, F.C., Berlin, Y.A., Siebbeles, L.D.A.: Mechanism of charge migration through dna: Molecular wire behavior, single-step tunneling or hopping? J. Am. Chem. Soc. 122, 10,903 (2000)
Grozema, F.C., Tonzani, S., Berlin, Y.A., Schatz, G.C., Siebbeles, L.D.A., Ratner, M.: Effect of structural dynamics on charge transfer in dna hairpins. J. Am. Chem. Soc. 130, 5157 (2008)
Hannewald, K., Bobbert, P.A.: Ab initio theory of charge-carrier transport in ultrapure organic crystals. Appl. Phys. Lett. 85, 1535 (2004)
Hannewald, K., Bobbert, P.A.: Anisotropy effects in phonon-assisted charge-carrier transport in organic molecular crystals. Phys. Rev. B 69, 075212 (2004)
Hannewald, K., Stojanović, V.M., Schellekens, J.M.T., Bobbert, P.A., Kresse, G., Hafner, J.: Theory of polaron band width narrowing in organic molecular crystals. Phys. Rev. B 69, 075211 (2004)
Hatcher, E., Balaeff, A., Keinan, S., Venkatramani, R., Beratan, D.N.: PNA versus DNA: Effects of Structural Fluctuations on Electronic Structure and Hole-Transport Mechanisms. J. Am. Chem. Soc. 130, 11,752 (2008)
Henderson, P.T., Jones, D., Hampikian, G., Kan, Y., Schuster, G.B.: Long-distance charge transport in duplex dna: The phonon-assisted polaron-like hopping mechanism. Proc. Natl. Acad. Sci. USA 96, 8353 (1999)
Holstein, T.: Studies of Polaron Motion, Part I. Ann. Phys. 8, 325 (1959)
Kim, E.G., Coropceanu, V., Gruhn, N.E., Sánchez-Carrera, R.S., Snoeberger, R., Matzger, A.J., Brédas, J.L.: Charge transport parameters of the pentathienoacene crystal. J. Am. Chem. Soc. 129, 13,072 (2007)
Kresse, G., Furthmüller, J.: Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set. Comput. Mater. Sci. 6, 15 (1996)
Kresse, G., Joubert, D.: From ultrasoft pseudopotentials to the projector augmented-wave method. Phys. Rev. B 59, 1758 (1998)
Lewis, F.D., Wu, T., Zhang, Y., Letsinger, R.L., Greenfield, S.R., Wasielewski, M.R.: Distance-Dependent Electron Transfer in DNA Hairpins. Science 277, 673 (1997)
Liu, T., Barton, J.K.: DNA Electrochemistry through the Base Pairs Not the Sugar-Phosphate Backbone. J. Am. Chem. Soc. 127, 10,160 (2005)
Mahan, G.D.: Many-Particle Physics. Kluwer Academic Publishers, New York (2000)
Maruccio, G., Visconti, P., Arima, V., D’Amico, S., Biasco, A., D’Amone, E., Cingolani, R., Rinaldi, R., Masiero, S., Giorgi, T., Gottarelli, G.: Field Effect Transistor Based on a Modified DNA Base. Nano Lett. 3, 479 (2003)
Matthes, L., Ortmann, F., Oetzel, B., Bechstedt, F., Hannewald, K.: (unpublished)
Ortmann, F., Bechstedt, F., Hannewald, K.: Theory of charge transport in organic crystals: Beyond holstein’s small-polaron model. Phys. Rev. B 79, 235206 (2009). DOI 10.1103/PhysRevB.79.235206
Ortmann, F., Hannewald, K., Bechstedt, F.: Ab initio description and visualization of charge transport in durene crystals. Appl. Phys. Lett. 93, 222105 (2008). DOI 10.1063/1.3033830
Ortmann, F., Hannewald, K., Bechstedt, F.: Guanine crystals: A first principles study. J. Phys. Chem. B 112, 1540 (2008). DOI 10.1021/jp076455t
Ortmann, F., Hannewald, K., Bechstedt, F.: Charge Transport in Guanine-Based Materials. J. Phys. Chem. B 113, 7367 (2009). DOI 10.1021/jp901029t
Ortmann, F., Preuss, M., Oetzel, B., Hannewald, K., Bechstedt, F.: Charge Transport through Guanine Crystals, p. 687. Springer-Verlag (2009)
de Pablo, P.J., Moreno-Herrero, F., Colchero, J., Gómez Herrero, J., Herrero, P., Baró, A.M., Ordejón, P., Soler, J.M., Artacho, E.: Absence of dc-Conductivity in λ-DNA. Phys. Rev. Lett. 85, 4992
Perdew, J.P.: p. 11. Akademie-Verlag, Berlin (1991)
Porath, D., Bezryadin, A., de Vries, S., Dekker, C.: Direct measurement of electrical transport through DNA molecules. Nature 403, 635 (2000)
Tran, P., Alavi, B., Gruner, G.: Charge Transport along the l-DNA Double Helix. Phys. Rev. Lett. 85, 1564 (2000)
Yoo, K.H., Ha, D.H., Lee, J.O., Park, J.W., Kim, J., Kim, J.J., Lee, H.Y., Kawai, T., Choi, H.Y.: Electrical Conduction through Poly(dA)-Poly(dT) and Poly(dG)-Poly(dC) DNA Molecules. Phys. Rev. Lett. 87, 198102 (2001)
Young, M.A., Ravishanker, G., Beveridge, D.L.: A 5-Nanosecond Molecular Dynamics Trajectory for B-DNA: Analysis of Structure, Motions, and Solvation. Biophys. J. 73, 2312 (1997)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2010 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Ortmann, F., Matthes, L., Oetzel, B., Bechstedt, F., Hannewald, K. (2010). Charge-Carrier Transport Through Guanine Crystals and Stacks. In: Wagner, S., Steinmetz, M., Bode, A., Müller, M. (eds) High Performance Computing in Science and Engineering, Garching/Munich 2009. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-13872-0_44
Download citation
DOI: https://doi.org/10.1007/978-3-642-13872-0_44
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-13871-3
Online ISBN: 978-3-642-13872-0
eBook Packages: Mathematics and StatisticsMathematics and Statistics (R0)