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Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomic Data

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Pixelization Paradigm (VIEW 2006)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 4370))

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Abstract

We describe a method turning scatterplot matrix visualizations into malleable graphical objects facilitating interaction and selection of pixelized data elements. The method relies on density estimation techniques [1,2] applied through standard image processing. A 2D scatterplot is considered as an image and is then transformed into nested regions that can be easily selected. Based on Wattenberg and Fisher [3], and as confirmed by our experience, we believe users have a good intuition interpreting and interacting with these multiscale graphical objects. Bio-molecular data serves here as a case study for our methodology. The method was discussed and designed in collaboration with experts in metabonomics and has proven to be useful and complementary to classical statistical methods.

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References

  1. Silverman, B.W.: Density Estimation for Statistics and Data Analysis. Chapman & Hall, Boca Raton (1986)

    MATH  Google Scholar 

  2. Scott, D.W.: Multivariate Density Estimation: Theory, Practice, and Visualization. Wiley Series in Probability and Statistics. Wiley-Interscience, Chichester (1992)

    MATH  Google Scholar 

  3. Wattenberg, M., Fisher, D.: A model of multi-scale perceptual organization in information graphics. In: North, S.C., Munzner, T. (eds.) IEEE Symposium on Information Visualization, IEEE Computer Society Press, Los Alamitos (2003)

    Google Scholar 

  4. Keim, D.A.: Designing pixel-oriented visualization techniques: theory and applications. IEEE Transactions on Visualization and Computer Graphics 6(1), 59–78 (2000)

    Article  Google Scholar 

  5. Chiricota, Y., Jourdan, F., Melançon, G.: Metric-based network exploration and multiscale scatterplot. In: Ward, M., Munzner, T. (eds.) IEEE International Symposium on Information Visualization, pp. 135–142. IEEE Computer Society Press, Los Alamitos (2004)

    Chapter  Google Scholar 

  6. Becker, R.A., Cleveland, W.S.: Brushing scatterplots. Technometrics 29, 127–142 (1987)

    Article  MathSciNet  Google Scholar 

  7. Martin, A.R., Ward, M.O.: High dimensional brushing for interactive exploration of multivariate data. In: IEEE Conference on Visualization ’95, pp. 271–278. IEEE Computer Society Press, Los Alamitos (1995)

    Google Scholar 

  8. Dumas, M.E., Canlet, C., Debrauwer, L., Martin, P., Paris, A.: Selection of biomarkers by a multivariate statistical processing of composite metabonomic data sets using multiple factor analysis. Journal of Proteome Research 4(5), 1485–1492 (2005)

    Article  Google Scholar 

  9. Ward, M.O., Rundensteiner, E.A., Yang, J., Doshi, P.R., Rosario, G.: Interactive poster: Xmdvtool: Interactive visual data exploration system for high-dimensional data sets. In: IEEE Symposium on Information Visualization, pp. 52–53. IEEE Computer Society Press, Los Alamitos (2002)

    Google Scholar 

  10. Russ, J.C.: The Image Processing Handbook, 3rd edn. CRC Press, Boca Raton (1998)

    Google Scholar 

  11. Herman, I., Marshall, M.S., Melançon, G.: Density functions for visual attributes and effective partitioning in graph visualization. In: Roth, S.F., Keim, D.A. (eds.) IEEE Symposium on Information Visualization, IEEE Computer Society, pp. 49–56. IEEE Computer Society Press, Los Alamitos (2000)

    Google Scholar 

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Pierre P Lévy Bénédicte Le Grand François Poulet Michel Soto Laszlo Darago Laurent Toubiana Jean-François Vibert

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© 2007 Springer Berlin Heidelberg

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Jourdan, F., Paris, A., Koenig, PY., Melançon, G. (2007). Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomic Data. In: Lévy, P.P., et al. Pixelization Paradigm. VIEW 2006. Lecture Notes in Computer Science, vol 4370. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-71027-1_18

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  • DOI: https://doi.org/10.1007/978-3-540-71027-1_18

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-71026-4

  • Online ISBN: 978-3-540-71027-1

  • eBook Packages: Computer ScienceComputer Science (R0)

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