Abstract
Earth primary productivity reflects the balance between two important biological processes: photosynthesis and respiration (Atkin et al. 2015; Niinemets 2016). Photosynthesis (A) refers to the assimilation of the atmospheric CO2 and its conversion into sugars, the first basic organic compounds entering the metabolism. This process of CO2 fixation uses the sun radiation as the energy source, and water as the electron donor, which in turn releases oxygen in the atmosphere. Dark respiration (R D) or mitochondrial respiration (Atkin and Tjoelker 2003) employs the products of photosynthesis through the glycolysis (cytosol), the tricarboxylic acid cycle (TCA, matrix of mitochondria) and the electron transport rate chain (ETC, inner membrane mitochondria) to produce ATP and carbon skeletons needed for growth, cell maintenance, and other essential cellular processes. During the process of respiration, O2 is consumed, and CO2 is released to the atmosphere within the same order of magnitude than photosynthesis (Jansson et al. 2010), which highlights the importance of considering this process in the leaves, whole-plant and global models of carbon, water, and oxygen fluxes (Valentini et al. 2000; Canadell et al. 2007; Atkin et al. 2015). The velocity and extent of both processes can be assessed at the leaf level using infrared-based gas exchange analysers.
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References
Atkin OK, Tjoelker MG (2003) Thermal acclimation and the dynamic response of plant respiration to temperature. Trends Plant Sci 8:343–351
Atkin OK, Bloomfield KJ, Reich PB, Tjoelker MG, Asner GP, Bonal D, Bönisch G, Bradford MG et al (2015) Global variability in leaf respiration in relation to climate, plant functional types and leaf traits. New Phytol 206:614–636
Bellasio C, Beerling DJ, Griffiths H (2016) An excel tool for deriving key photosynthetic parameters from combined gas exchange and chlorophyll fluorescence: theory and practice. Plant Cell Environ 39:1180–1197
Buckley TN, Díaz-Espejo A (2015) Partitioning changes in photosynthetic rate into contributions from different variables. Plant Cell Environ 38:1200–1211
Canadell JG, Le Quere C, Raupach MR, Field CB, Buitenhuis ET, Ciais P, Conway TJ, Gillett NP, Houghton RA, Marland G (2007) Contributions to accelerating atmospheric CO2 growth from economic activity, carbon intensity, and efficiency of natural sinks. Proc Natl Acad Sci U S A 104:18866–18870
Carriquí M, Cabrera HM, Conesa MÀ, Coopman RE, Douthe C, Gago J, Gallé A, Galmés J, Ribas-Carbo M, Tomás M, Flexas J (2015) Diffusional limitations explain the lower photosynthetic capacity of ferns as compared with angiosperms in a common garden study. Plant Cell Environ 38:448–460
Demmig-Adams B, Adams WW III, Barker DH, Logan BA, Bowling DR, Verhoeven AS (1996) Using chlorophyll fluorescence to assess the fraction of absorbed light allocated to thermal dissipation of excess excitation. Physiol Plant 98:253–264
Demmig-Adams B, Cohu CM, Muller O, Adams WW III (2012) Modulation of photosynthetic energy conversion efficiency in nature: from seconds to seasons. Photosynth Res 113:75–88
Epron D, Godard D, Cornic G, Genty B (1995) Limitation of net CO2 assimilation rate by internal resistances to CO2 transfer in the leaves of two tree species (Fagus sylvatica L and Castanea sativa mill). Plant Cell Environ 18:43–51
Ethier GJ, Livingston NJ (2004) On the need to incorporate sensitivity to CO2 transfer conductance into the Farquhar-von Caemmerer-berry leaf photosynthesis model. Plant Cell Environ 27:137–153
Evans JR, Santiago LS (2014) PrometheusWiki gold leaf protocol: gas exchange using LI-COR 6400. Funct Plant Biol 41:223–226
Farquhar GD, von Caemmerer S, Berry JA (1980) A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species. Planta 149:78–90
Field CB, Ball JT, Berry JA (1989) Photosynthesis: principles and field techniques. In: Pearcy RW, Ehleringer JR, Mooney HA, Rundel PW (eds) Plant physiological ecology: field methods and instrumentation. Chapman & Hall, New York, pp 209–253
Field CB, Ball JT, Berry JA (2000) Photosynthesis: principles and field techniques. In: Pearcy RW, Ehleringer JR, Mooney HA, Rundel PW (eds) Plant physiological ecology. Springer, Dordrecht, pp 209–253
Flexas J, Bota J, Escalona JM, Sampol B, Medrano H (2002) Effects of drought on photosynthesis in grapevines under field conditions: an evaluation of stomatal and mesophyll limitations. Funct Plant Biol 29:461–471
Flexas J, Barbour MM, Brendel O, Cabrera HM, Carriquí M, Díaz-Espejo A, Douthe C, Dreyerc E, Ferrio JP, Gago J, Gallé A, Galmés J, Kodama N, Medrano H, Niinemets Ü, Peguero-Pina JJ, Pou A, Ribas-Carbó M, Tomás M, Tosens T, Warren CR (2012a) Mesophyll diffusion conductance to CO2: an unappreciated central player in photosynthesis. Plant Sci 193:70–84
Flexas J, Loreto F, Medrano H (eds) (2012b) Terrestrial photosynthesis in a changing environment: a molecular, physiological, and ecological approach. Cambridge University Press, Cambridge ISBN: 9780521899413
Flexas J, Scoffoni C, Gago J, Sack L (2013) Leaf mesophyll conductance and leaf hydraulic conductance: an introduction to their measurement and coordination. J Exp Bot 64:3965–3981
Flexas J, Díaz-Espejo A, Conesa MA, Coopman RE, Douthe C, Gago J, Gallé A, Galmés J, Medrano H, Ribas-Carbó M, Tomàs M, Niinemets Ü (2016) Mesophyll conductance to CO2 and Rubisco as targets for improving intrinsic water use efficiency in C3 plants. Plant Cell Environ 39:965–982
Gaastra P (1959) Photosynthesis of crop plants as influenced by light, carbon dioxide, temperature, and stomatal diffusion resistance. Doctoral dissertation, Wageningen University, Veenman
Gago J, Douthe C, Flórez-Sarasa I, Escalona JM, Galmés J, Fernie AR, Flexas J, Medrano H (2014) Opportunities for improving leaf water use efficiency under climate change conditions. Plant Sci 226:108–119
Gallé A, Flexas J (2010) Gas-exchange and chlorophyll fluorescence measurements in grapevine leaves in the field. In: Delrot S, Medrano H, Or E, Bavaresco L, Grando S (eds) Methodologies and results in grapevine research. Springer, Dordrecht, pp 107–121
Gallé A, Florez-Sarasa I, Tomás M, Pou A, Medrano H, Ribas-Carbó M, Flexas J (2009) The role of mesophyll conductance during water stress and recovery in tobacco (Nicotiana sylvestris): acclimation or limitation? J Exp Bot 60:2379–2390
Galmés J, Flexas J, Keys AJ, Cifre J, Mitchell RA, Madgwick PJ, Haslam RP, Medrano H, Parry MA (2005) RubisCO specificity factor tends to be larger in plant species from drier habitats and in species with persistent leaves. Plant Cell Environ 28:571–579
Galmés J, Molins A, Flexas J, Conesa MÀ (2017) Coordination between leaf CO2 diffusion and Rubisco properties allows maximizing photosynthetic efficiency in Limonium species. Plant Cell Environ 40:2081–2094
Genty B, Harbinson J, Briantais JM, Baker NR (1990) The relationship between non-photochemical quenching of chlorophyll fluorescence and the rate of photosystem 2 photochemistry in leaves. Photosynth Res 25:249–257
Grassi G, Magnani F (2005) Stomatal, mesophyll conductance and biochemical limitations to photosynthesis as affected by drought and leaf ontogeny in ash and oak trees. Plant Cell Environ 28:834–849
Harley PC, Thomas RB, Reynolds JF, Strain BR (1992) Modelling photosynthesis of cotton grown in elevated CO2. Plant Cell Environ 15:271–282
Hermida-Carrera C, Kapralov MV, Galmés J (2016) Rubisco catalytic properties and temperature response in crops. Plant Physiol 171:2549–2561
Jansson C, Wullschleger SD, Kalluri UC, Tuskan GA (2010) Phytosequestration: carbon biosequestration by plants and the prospects of genetic engineering. BioSci 60:685–696
Jones HG (1985) Partitioning stomatal and non-stomatal limitations to photosynthesis. Plant Cell Environ 8:95–104
Laisk A, Oja V (2018) Kinetics of photosystem II electron transport: a mathematical analysis based on chlorophyll fluorescence induction. Photosynth Res 136:63 https://doi.org/10.1007/s11120-017-0439-y
Long SP, Farage PK, Garcia RL (1996) Measurement of leaf and canopy photosynthetic CO2 exchange in the field. J Exp Bot 47:1629–1642
Loriaux S, Avenson T, Welles J, McDermitt D, Eckles R, Riensche B, Genty B (2013) Closing in on maximum yield of chlorophyll fluorescence using a single multiphase flash of sub-saturating intensity. Plant Cell Environ 36:1755–1770
Martins SC, Galmés J, Molins A, DaMatta FM (2013) Improving the estimation of mesophyll conductance to CO2: on the role of electron transport rate correction and respiration. J Exp Bot 64:3285–3298
Maxwell K, Johnson GN (2000) Chlorophyll fluorescence – a practical guide. J Exp Bot 51:659–668
Montero R, Ribas-Carbó M, Del Saz NF, El Aou-ouad H, Berry JA, Flexas J, Bota J (2016) Improving respiration measurements with gas exchange analyzers. J Plant Physiol 207:73–77
Murchie EH, Niyogi KK (2011) Manipulation of photoprotection to improve plant photosynthesis. Plant Physiol 155:86–92
Niinemets Ü (2016) Within-canopy variations in functional leaf traits: structural, chemical and ecological controls and diversity of responses. In: Hikosaka K, Niinemets Ü, Anten N (eds) Canopy photosynthesis: from basics to applications. Springer, Berlin, pp 101–141
Niinemets Ü, Cescatti A, Rodeghiero M, Tosens T (2005) Leaf internal diffusion conductance limits photosynthesis more strongly in older leaves of Mediterranean evergreen broad-leaved species. Plant Cell Environ 28:1552–1566
Niinemets Ü, Díaz-Espejo A, Flexas J, Galmes J, Warren CR (2009) Importance of mesophyll diffusion conductance in estimation of plant photosynthesis in the field. J Exp Bot 60:2271–2282
Osmond B, Förster B (2006) Photoinhibition: then and now. In: Demmig-Adams B, Adams WW III, Mattoo AK (eds) Photoprotection, Photoinhibition, gene regulation, and environment: advances in photosynthesis and respiration. Kluwer, Dordrecht, pp 11–22
Osmond CB, Ludlow MM, Davis R, Cowan IR, Powles SB, Winter K (1979) Stomatal responses to humidity in Opuntia inermis in relation to control of CO2 and H2O exchange patterns. Oecologia 41:65–76
Pérez-Martín A, Flexas J, Ribas-Carbó M, Bota J, Tomás M, Infante JM, Díaz-Espejo A (2009) Interactive effects of soil water deficit and air vapour pressure deficit on mesophyll conductance to CO2 in Vitis vinifera and Olea europaea. J Exp Bot 60:2391–2405
Pons TL, Flexas J, von Caemmerer S, Evans JR, Genty B, Ribas-Carbó M, Brugnoli E (2009) Estimating mesophyll conductance to CO2: methodology, potential errors, and recommendations. J Exp Bot 60:2217–2234
Sharkey TD (2016) What gas exchange data can tell us about photosynthesis. Plant Cell Environ 39:1161–1163
Sharkey TD, Bernacchi CJ, Farquhar GD, Singsaas EL (2007) Fitting photosynthetic carbon dioxide response curves for C3 leaves. Plant Cell Environ 30:1035–1040
Tosens T, Nishida K, Gago J, Coopman RE, Cabrera HM, Carriquí M, Laanisto L, Morales L, Nadal M, Rojas R, Talts E, Tomas M, Hanba Y, Niinemets Ü, Flexas J (2016) The photosynthetic capacity in 35 ferns and fern allies: mesophyll CO2 diffusion as a key trait. New Phytol 209:1576–1590
Valentini R, Epron D, Deangelis P, Matteucci G, Dreyer E (1995) In-situ estimation of net CO2 assimilation, photosynthetic electron flow and photorespiration in Turkey oak (Q. cerris L) leaves – diurnal cycles under different levels of water-supply. Plant Cell Environ 18:631–640
Valentini R, Matteucci G, Dolman AJ, Schulze ED, Rebmann C, Moors EJ, Granier A, Gross P, Jensen NO, Pilegaard K, Lindroth A, Grelle A, Bernhofer C, Grünwald T, Aubinet M, Ceulemans R, Kowalski AS, Vesala T, Rannik Ü, Berbigier P, Loustau D, Guðmundsson J, Thorgeirsson H, Ibrom A, Morgenstern K, Clement R, Moncrieff J, Montagnani L, Minerbi S, Jarvis PG (2000) Respiration as the main determinant of carbon balance in European forests. Nature 404(6780):861–865
von Caemmerer S, Farquhar GD (1981) Some relationships between the biochemistry of photosynthesis and the gas-exchange of leaves. Planta 153:376–387
Walker BJ, Skabelund DC, Busch FA, Ort DR (2016) An improved approach for measuring the impact of multiple CO2 conductances on the apparent photorespiratory CO2 compensation point through slope–intercept regression. Plant Cell Environ 39:1198–1203
Walker BJ, Orr DJ, Carmo-Silva E, Parry MA, Bernacchi CJ, Ort DR (2017) Uncertainty in measurements of the photorespiratory CO2 compensation point and its impact on models of leaf photosynthesis. Photosynth Res 132:245–255
Yin X, Struik PC, Romero P, Harbinson J, Evers JB, Van der Putten, Vos J (2009) Using combined measurements of gas exchange and chlorophyll fluorescence to estimate parameters of a biochemical C3 photosynthesis model: a critical appraisal and a new integrated approach applied to leaves in a wheat (Triticum aestivum) canopy. Plant Cell Environ 32:448–464
Yin X, Sun Z, Struik PC, Gu J (2011) Evaluating a new method to estimate the rate of leaf respiration in the light by analysis of combined gas exchange and chlorophyll fluorescence measurements. J Exp Bot 62:3489–3499
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LI-COR (2012) Using the LI-6400/LI-6400XT portable photosynthesis system – Version 6. LI-COR Biosciences Inc., Lincoln
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Douthe, C., Gago, J., Ribas-Carbó, M., Núñez, R., Pedrol, N., Flexas, J. (2018). Measuring Photosynthesis and Respiration with Infrared Gas Analysers. In: Sánchez-Moreiras, A., Reigosa, M. (eds) Advances in Plant Ecophysiology Techniques. Springer, Cham. https://doi.org/10.1007/978-3-319-93233-0_4
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