Abstract
Only limited sequencing data of the normal extracellular DNA (ecDNA) are currently available. The uptake of the ecDNA by cultured cells and its integration into the host chromatin have been demonstrated. A number of membrane-bearing vesicles in plasma and serum have been shown to carry nucleic acids. The presence of Tandem Repeat (TR) in both apoptotic DNA of HUVEC culture medium and membrane-associated DNA is shown. The existence and successful application of CREST serum also show the presence of fragments of the centromeric heterochromatin together with their TR and specific proteins in blood. Apparently, pericentromeric and centromeric DNA (TR) should be part of ecDNA in all cases.
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References
Anker P, Stroun M, Maurice PA et al (1975) Spontaneous release of DNA by human blood lymphocytes as shown in an in vitro system. Cancer Res 35:2375–2382
Beck Y, Urnovitz HB, Riggert J et al (2009) Profile of the circulating DNA in apparently healthy individuals. Clin Chem 55:730–738
Cheng J, Torkamani A, Peng Y et al (2012) Plasma membrane associated transcription of cytoplasmic DNA. PNAS USA 109:10827–10831
Earnshaw WC, Halligan N, Cooke C, Rothfield N (1984) The kinetochore is part of the metaphase chromosome scaffold. J Cell Biol 8:352–327
Herrman M, Leitmann W, Krapf EF, Kalden JR (1989) Molecular characterization and in vitro effects of nucleic acids from plasma of patients with systemic lupus erythematosis. In: Molecular and cellular mechanisms of human hypersensitivity and autoimmunity. Wiley, New York, pp 147–157
Komissarov AS, Gavrilova EV, Demin SJ et al (2011) Tandemly repeated DNA families in the mouse genome. BMC Genomics 12:531
Kuznetsova IS, Enukashvily NI, Noniashvili EM et al (2007) Evidence for the existence of satellite DNA-containing connection between metaphase chromosomes. J Cell Biochem 101:1046–1061
Mittra I, Khare NK, Raghuram GV et al (2015) Circulating nucleic acids damage DNA of healthy cells by integrating into their genomes. J Biosci 40:91–111
Morozkin ES, Loseva EM, Morozov IV et al (2012) A comparative study of cell-free apoptotic and genomic DNA using FISH and massive parallel sequencing. Expert Opin Biol Ther 12:S11–S17
Murtaza M, Dawson SJ, Tsui DW et al (2013) Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497:108–112
Rykova EY, Morozkin ES, Ponomaryova AA et al (2012) Cell-free and cell-bound circulating nucleic acid complexes: mechanisms of generation, concentration and content. Expert Opin Biol Ther 12:S141–S153
Solovei I, Kreysing M, Lanstot C et al (2009) Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution. Cell 137:356–368
Van Helden PD (1985) Z-DNA-forming elements in serum DNA from human systemic lupus erythematosis. J Immunol 134:177–179
Vasilyeva IN, Podgornaya OI, Bespalov VG (2015) Nucleosome fraction of extracellular DNA as the index of apoptosis (in Russian). Tsitologiya 57:87–94
Vasioukhin V, Anker P, Maurice P et al (1994) Point mutations of the N-ras gene in the blood plasma DNA of patients with myelodysplastic syndrome or acute myelogenous leukaemia. Br J Haematol 86:774–779
Vasiukhin VI, Lipskaia LA, Tsvetkov AG, Podgornaia OI (1991) DNA from human lymphocytes contains a sequence, homologous to immunoglobulin gene kappa (in Russian). Mol Biol (Mosk) 25:405–412
Waterston RH, Lindblad-Toh K, Birney E et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520–562
Winter O, Musiol S, Schabowsky M et al (2015) Analyzing pathogenic (double-stranded (ds) DNA-specific) plasma cells via immunofluorescence microscopy. Arthritis Res Ther 17:293
Acknowledgments
This work was supported by the Presidium of RAS “Molecular and Cell Biology” and RNF Grant 15-15-20026.
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Podgornaya, O.I., Vasilyeva, I.N., Bespalov, V.G. (2016). Heterochromatic Tandem Repeats in the Extracellular DNA. In: Gahan, P., Fleischhacker, M., Schmidt, B. (eds) Circulating Nucleic Acids in Serum and Plasma – CNAPS IX. Advances in Experimental Medicine and Biology, vol 924. Springer, Cham. https://doi.org/10.1007/978-3-319-42044-8_16
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DOI: https://doi.org/10.1007/978-3-319-42044-8_16
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