Skip to main content

Joint Super-Resolution Using Only One Anisotropic Low-Resolution Image per q-Space Coordinate

  • Conference paper
  • First Online:
Computational Diffusion MRI

Abstract

Recently, super-resolution methods for diffusion MRI capable of retrieving high-resolution diffusion-weighted images were proposed, yielding a resolution beyond the scanner hardware limitations. These techniques rely on acquiring either one isotropic or several anisotropic low-resolution versions of each diffusion-weighted image. In the present work, a variational formulation of joint super-resolution of all diffusion-weighted images is presented which takes advantage of interrelations between similar diffusion-weighted images. These interrelations allow to use only one anisotropic low-resolution version of each diffusion-weighted image and to retrieve its missing high-frequency components from other images which have a similar q-space coordinate but a different resolution-anisotropy orientation. An acquisition scheme that entails complementary resolution-anisotropy among neighboring q-space points is introduced. High-resolution images are recovered at reduced scan time requirements compared to state-of-the-art anisotropic super-resolution methods. The introduced principles of joint super-resolution thus have the potential to further improve the performance of super-resolution methods.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Behrens, T.E.J., Woolrich, M.W., Jenkinson, M., Johansen-Berg, H., Nunes, R.G., Clare, S., Matthews, P.M., Brady, J.M., Smith, S.M.: Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50, 1077–1088 (2003). doi:10.1002/mrm.10609

    Article  Google Scholar 

  2. Bredies, K., Kunisch, K., Pock, T.: Total generalized variation. SIAM J. Imaging Sci. 3, 492–526 (2010). doi:10.1137/090769521

    Article  MathSciNet  MATH  Google Scholar 

  3. Buades, A., Coll, B., Morel, J.M.: A review of image denoising algorithms, with a new one. Multiscale Model. Simul. 4, 490–530 (2005). doi:10.1137/040616024

    Article  MathSciNet  MATH  Google Scholar 

  4. Calamante, F., Tournier, J.-D., Jackson, G.D., Connelly, A.: Track-density imaging (TDI): super-resolution white matter imaging using whole-brain track-density mapping. NeuroImage 53, 1233–1243 (2010). doi:10.1016/j.neuroimage.2010.07.024

    Article  Google Scholar 

  5. Calamante, F., Tournier, J.-D., Heidemann, R.M., Anwander, A., Jackson, G.D., Connelly, A.: Track density imaging (TDI): validation of super resolution property. NeuroImage 56, 1259–1266 (2011). doi:10.1016/j.neuroimage.2011.02.059

    Article  Google Scholar 

  6. Calamante, F., Tournier, J.-D., Kurniawan, N.D., Yang, Z., Gyengesi, E., Galloway, G.J., Reutens, D.C., Connelly, A.: Super-resolution track-density imaging studies of mouse brain: comparison to histology. NeuroImage 59, 286–296 (2012). doi:10.1016/j.neuroimage.2011.07.014

    Article  Google Scholar 

  7. Cheryauka, A.B., Lee, J.N., Samsonov, A.A., Defrise, M., Gullberg, G.T.: MRI diffusion tensor reconstruction with PROPELLER data acquisition. Magn. Reson. Imaging 22, 139–148 (2004). doi:10.1016/j.mri.2003.08.001

    Article  Google Scholar 

  8. Coupé, P., Manjón, J.V., Chamberland, M., Descoteaux, M., Hiba, B.: Collaborative patch-based super-resolution for diffusion-weighted images. NeuroImage 83, 245–261 (2013). doi:10.1016/j.neuroimage.2013.06.030

    Article  Google Scholar 

  9. Golkov, V., Menzel, M.I., Sprenger, T., Souiai, M., Haase, A., Cremers, D., Sperl, J.I.: Direct reconstruction of the average diffusion propagator with simultaneous compressed-sensing-accelerated diffusion spectrum imaging and image denoising by means of total generalized variation regularization. In: Proceedings of Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, 10–16 May 2014, p. 4472

    Google Scholar 

  10. Haldar, J.P., Wedeen, V.J., Nezamzadeh, M., Dai, G., Weiner, M.W., Schuff, N., Liang, Z.-P.: Improved diffusion imaging through SNR-enhancing joint reconstruction. Magn. Reson. Med. 69, 277–289 (2013). doi:10.1002/mrm.24229

    Article  Google Scholar 

  11. Inglese, M., Bester, M.: Diffusion imaging in multiple sclerosis: research and clinical implications. NMR Biomed. 23, 865–872 (2010). doi:10.1002/nbm.1515

    Article  Google Scholar 

  12. Johansen-Berg, H., Behrens, T.E.J. (eds.): Diffusion MRI: From Quantitative Measurement to In-vivo Neuroanatomy, 2nd edn. Academic, New York (2013)

    Google Scholar 

  13. Jones, D.K. (ed.): Diffusion MRI: Theory, Methods and Applications. Oxford University Press, Oxford (2010)

    Google Scholar 

  14. Knoll, F., Bredies, K., Pock, T., Stollberger, R.: Second order total generalized variation (TGV) for MRI. Magn. Reson. Med. 65, 480–491 (2011). doi:10.1002/mrm.22595

    Article  Google Scholar 

  15. Lam, F., Babacan, S.D., Haldar, J.P., Weiner, M.W., Schuff, N., Liang, Z.-P.: Denoising diffusion-weighted magnitude MR images using rank and edge constraints. Magn. Reson. Med. 71, 1272–1284 (2014). doi:10.1002/mrm.24728

    Article  Google Scholar 

  16. Manjón, J. V, Coupé, P., Buades, A., Fonov, V., Louis Collins, D., Robles, M.: Non-local MRI upsampling. Med. Image Anal. 14, 784–792 (2010). doi:10.1016/j.media.2010.05.010

    Article  Google Scholar 

  17. Martín, A., Marquina, A., Hernández-Tamames, J.A., García-Polo, P., Schiavi, E.: MRI TGV based super-resolution. In: Proceedings of the ISMRM 21st Annual Meeting, Salt Lake City, 20–26 Apr 2013, p. 2696

    Google Scholar 

  18. Nedjati-Gilani, S., Alexander, D.C., Parker, G.J.M.: Regularized super-resolution for diffusion MRI. In: 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, 14–17 May 2008, pp. 875–878

    Google Scholar 

  19. Padhani, A.R., Liu, G., Mu-Koh, D., Chenevert, T.L., Thoeny, H.C., Ross, B.D., Cauteren, M. Van, Collins, D., Hammoud, D.A., Rustin, G.J.S., Taouli, B.: Diffusion-weighted magnetic resonance imaging as a cancer biomarker: consensus and recommendations. Neoplasia 11, 102–125 (2009). doi:10.1593/neo.81328

    Article  Google Scholar 

  20. Plenge, E., Poot, D.H.J., Bernsen, M., Kotek, G., Houston, G., Wielopolski, P., van der Weerd, L., Niessen, W.J., Meijering, E.: Super-resolution methods in MRI: can they improve the trade-off between resolution, signal-to-noise ratio, and acquisition time? Magn. Reson. Med. 68, 1983–1993 (2012). doi:10.1002/mrm.24187

    Article  Google Scholar 

  21. Pock, T., Cremers, D., Bischof, H., Chambolle, A.: An algorithm for minimizing the Mumford–Shah functional. In: 12th International Conference on Computer Vision (ICCV). pp. 1133–1140. IEEE, Kyoto (2009)

    Google Scholar 

  22. Poot, D.H.J., Jeurissen, B., Bastiaensen, Y., Veraart, J., Van Hecke, W., Parizel, P.M., Sijbers, J.: Super-resolution for multislice diffusion tensor imaging. Magn. Reson. Med. 69, 103–113 (2013). doi:10.1002/mrm.24233

    Article  Google Scholar 

  23. Ruthotto, L., Mohammadi, S., Weiskopf, N.: A new method for joint susceptibility artefact correction and super-resolution for dMRI. In: Proceedings of SPIE 9034, Medical Imaging 2014: Image Processing, San Diego, 15 Feb 2014

    Google Scholar 

  24. Rousseau, F.: A non-local approach for image super-resolution using intermodality priors. Med. Image Anal. 14, 594–605 (2010). doi:10.1016/j.media.2010.04.005

    Article  Google Scholar 

  25. Scherrer, B., Gholipour, A., Warfield, S.K.: Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med. Image Anal. 16, 1465–1476 (2012). doi:10.1016/j.media.2012.05.003

    Article  Google Scholar 

  26. Shenton, M.E., Hamoda, H.M., Schneiderman, J.S., Bouix, S., Pasternak, O., Rathi, Y., Vu, M., Purohit, M.P., Helmer, K., Koerte, I., Lin, A.P., Westin, C.-F., Kikinis, R., Kubicki, M., Stern, R.A., Zafonte, R.: A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury. Brain Imaging Behav. 6, 137–192 (2012). doi:10.1007/s11682-012-9156-5

    Article  Google Scholar 

  27. Tobisch, A., Neher, P.F., Rowe, M.C., Maier-Hein, K.H., Zhang, H.: Model-based super-resolution of diffusion MRI. In: Schultz, T., Nedjati-Gilani, G., Venkataraman, A., O’Donnell, L., Panagiotaki, E. (eds.) Computational Diffusion MRI and Brain Connectivity, MICCAI Workshops, pp. 25–34. Springer International Publishing, Berlin (2014)

    Chapter  Google Scholar 

  28. Tristán-Vega, A., García-Pérez, V., Aja-Fernández, S., Westin, C.-F.: Efficient and robust nonlocal means denoising of MR data based on salient features matching. Comput. Methods Programs Biomed. 105, 131–144 (2012). doi:10.1016/j.cmpb.2011.07.014

    Article  Google Scholar 

  29. Van Reeth, E., Tham, I.W.K., Tan, C.H., Poh, C.L.: Super-resolution in magnetic resonance imaging: a review. Concepts Magn. Reson. Part A 40, 306–325 (2012). doi:10.1002/cmr.a.21249

    Article  Google Scholar 

  30. Wedeen, V.J., Hagmann, P., Tseng, W.-Y.I., Reese, T.G., Weisskoff, R.M.: Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 54, 1377–1386 (2005). doi:10.1002/mrm.20642

    Article  Google Scholar 

  31. Yap, P.-T., An, H., Chen, Y., Shen, D.: Fiber-driven resolution enhancement of diffusion-weighted images. NeuroImage 84, 939–950 (2014). doi:10.1016/j.neuroimage.2013.09.016

    Article  Google Scholar 

Download references

Acknowledgements

Grant support: Deutsche Telekom Foundation.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Vladimir Golkov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Golkov, V. et al. (2014). Joint Super-Resolution Using Only One Anisotropic Low-Resolution Image per q-Space Coordinate. In: O'Donnell, L., Nedjati-Gilani, G., Rathi, Y., Reisert, M., Schneider, T. (eds) Computational Diffusion MRI. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-319-11182-7_16

Download citation

Publish with us

Policies and ethics