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Basic Science Perspective on Engineering and Modeling the Large Airways

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Engineering Translational Models of Lung Homeostasis and Disease

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 1413))

Abstract

The airway epithelium provides a physical and biochemical barrier playing a key role in protecting the lung from infiltration of pathogens and irritants and is, therefore, crucial in maintaining tissue homeostasis and regulating innate immunity. Due to continual inspiration and expiration of air during breathing, the epithelium is exposed to a plethora of environmental insults. When severe or persistent, these insults lead to inflammation and infection. The effectiveness of the epithelium as a barrier is reliant upon its capacity for mucociliary clearance, immune surveillance, and regeneration upon injury. These functions are accomplished by the cells that comprise the airway epithelium and the niche in which they reside. Engineering of new physiological and pathological models of the proximal airways requires the generation of complex structures comprising the surface airway epithelium, submucosal gland epithelium, extracellular matrix, and niche cells, including smooth muscle cells, fibroblasts, and immune cells. This chapter focuses on the structure-function relationships in the airways and the challenges of developing complex engineered models of the human airway.

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References

  1. Aghali, A., L. Khalfaoui, A. B. Lagnado, L. Drake, J. J. Teske, C. M. Pabelick, J. F. Passos, and Y. S. Prakash. 2022. ‘Cellular Senescence is Increased in Airway Smooth Muscle Cells of Elderly Asthmatics’, Am J Physiol Lung Cell Mol Physiol.

    Google Scholar 

  2. Ahadian, S., R. Civitarese, D. Bannerman, M. H. Mohammadi, R. Lu, E. Wang, L. Davenport-Huyer, B. Lai, B. Zhang, Y. Zhao, S. Mandla, A. Korolj, and M. Radisic. 2018. ‘Organ-On-A-Chip Platforms: A Convergence of Advanced Materials, Cells, and Microscale Technologies’, Adv Healthc Mater, 7.

    Google Scholar 

  3. Ahmad, S., D. P. Nichols, M. Strand, R. C. Rancourt, S. H. Randell, C. W. White, and A. Ahmad. 2011. ‘SERCA2 regulates non-CF and CF airway epithelial cell response to ozone’, PLoS One, 6: e27451.

    CAS  PubMed  PubMed Central  Google Scholar 

  4. Ahmadvand, N., F. Khosravi, A. Lingampally, R. Wasnick, A. I. Vazquez-Armendariz, G. Carraro, M. Heiner, S. Rivetti, Y. Lv, J. Wilhelm, A. Gunther, S. Herold, D. Al Alam, C. Chen, P. Minoo, J. S. Zhang, and S. Bellusci. 2021. ‘Identification of a novel subset of alveolar type 2 cells enriched in PD-L1 and expanded following pneumonectomy’, Eur Respir J, 58.

    Google Scholar 

  5. Ali, M., X. Zhang, R. LaCanna, D. Tomar, J. W. Elrod, and Y. Tian. 2022. ‘MICU1-dependent mitochondrial calcium uptake regulates lung alveolar type 2 cell plasticity and lung regeneration’, JCI Insight, 7.

    Google Scholar 

  6. Aros, C. J., P. Vijayaraj, C. J. Pantoja, B. Bisht, L. K. Meneses, J. M. Sandlin, J. A. Tse, M. W. Chen, A. Purkayastha, D. W. Shia, J. M. S. Sucre, T. M. Rickabaugh, E. K. Vladar, M. K. Paul, and B. N. Gomperts. 2020. ‘Distinct Spatiotemporally Dynamic Wnt-Secreting Niches Regulate Proximal Airway Regeneration and Aging’, Cell Stem Cell, 27: 413–29 e4.

    CAS  PubMed  PubMed Central  Google Scholar 

  7. Arteaga-Solis, E., C. Settembre, A. Ballabio, and G. Karsenty. 2012. ‘Sulfatases are determinants of alveolar formation’, Matrix Biol, 31: 253–60.

    CAS  PubMed  PubMed Central  Google Scholar 

  8. Artzy-Schnirman, A., N. Hobi, N. Schneider-Daum, O. T. Guenat, C. M. Lehr, and J. Sznitman. 2019. ‘Advanced in vitro lung-on-chip platforms for inhalation assays: From prospect to pipeline’, Eur J Pharm Biopharm, 144: 11–17.

    CAS  PubMed  PubMed Central  Google Scholar 

  9. Baconnais, S., R. Tirouvanziam, J. M. Zahm, S. de Bentzmann, B. Peault, G. Balossier, and E. Puchelle. 1999. ‘Ion composition and rheology of airway liquid from cystic fibrosis fetal tracheal xenografts’, Am J Respir Cell Mol Biol, 20: 605–11.

    CAS  PubMed  Google Scholar 

  10. Balasooriya, G. I., M. Goschorska, E. Piddini, and E. L. Rawlins. 2017. ‘FGFR2 is required for airway basal cell self-renewal and terminal differentiation’, Development, 144: 1600–06.

    CAS  PubMed  PubMed Central  Google Scholar 

  11. Barry, P. J., M. A. Mall, A. Alvarez, C. Colombo, K. M. de Winter-de Groot, I. Fajac, K. A. McBennett, E. F. McKone, B. W. Ramsey, S. Sutharsan, J. L. Taylor-Cousar, E. Tullis, N. Ahluwalia, L. S. Jun, S. M. Moskowitz, V. Prieto-Centurion, S. Tian, D. Waltz, F. Xuan, Y. Zhang, S. M. Rowe, D. Polineni, and V. X. Study Group. 2021. ‘Triple Therapy for Cystic Fibrosis Phe508del-Gating and -Residual Function Genotypes’, N Engl J Med, 385: 815–25.

    Google Scholar 

  12. Basil, M. C., F. L. Cardenas-Diaz, J. J. Kathiriya, M. P. Morley, J. Carl, A. N. Brumwell, J. Katzen, K. J. Slovik, A. Babu, S. Zhou, M. M. Kremp, K. B. McCauley, S. Li, J. D. Planer, S. S. Hussain, X. Liu, R. Windmueller, Y. Ying, K. M. Stewart, M. Oyster, J. D. Christie, J. M. Diamond, J. F. Engelhardt, E. Cantu, S. M. Rowe, D. N. Kotton, H. A. Chapman, and E. E. Morrisey. 2022. ‘Human distal airways contain a multipotent secretory cell that can regenerate alveoli’, Nature, 604: 120–26.

    CAS  PubMed  PubMed Central  Google Scholar 

  13. Basil, M. C., and E. E. Morrisey. 2020. ‘Lung regeneration: a tale of mice and men’, Semin Cell Dev Biol, 100: 88–100.

    CAS  PubMed  Google Scholar 

  14. Becker, M. N., M. S. Sauer, M. S. Muhlebach, A. J. Hirsh, Q. Wu, M. W. Verghese, and S. H. Randell. 2004. ‘Cytokine secretion by cystic fibrosis airway epithelial cells’, Am J Respir Crit Care Med, 169: 645–53.

    PubMed  Google Scholar 

  15. Benam, K. H., R. Novak, J. Nawroth, M. Hirano-Kobayashi, T. C. Ferrante, Y. Choe, R. Prantil-Baun, J. C. Weaver, A. Bahinski, K. K. Parker, and D. E. Ingber. 2016. ‘Matched-Comparative Modeling of Normal and Diseased Human Airway Responses Using a Microengineered Breathing Lung Chip’, Cell Syst, 3: 456–66 e4.

    CAS  PubMed  Google Scholar 

  16. Benfante, A., S. Battaglia, S. Principe, C. Di Mitri, A. Paterno, M. Spatafora, and N. Scichilone. 2016. ‘Asthmatics with high levels of serum surfactant protein D have more severe disease’, Eur Respir J, 47: 1864–7.

    CAS  PubMed  Google Scholar 

  17. Bennet, T. J., A. Randhawa, J. Hua, and K. C. Cheung. 2021. ‘Airway-On-A-Chip: Designs and Applications for Lung Repair and Disease’, Cells, 10.

    Google Scholar 

  18. Bensadoun, E. S., A. K. Burke, J. C. Hogg, and C. R. Roberts. 1996. ‘Proteoglycan deposition in pulmonary fibrosis’, Am J Respir Crit Care Med, 154: 1819–28.

    CAS  PubMed  Google Scholar 

  19. Bernacki, S. H., A. L. Nelson, L. Abdullah, J. K. Sheehan, A. Harris, C. W. Davis, and S. H. Randell. 1999. ‘Mucin gene expression during differentiation of human airway epithelia in vitro. Muc4 and muc5b are strongly induced’, Am J Respir Cell Mol Biol, 20: 595–604.

    CAS  PubMed  Google Scholar 

  20. Bhatia, S. N., and D. E. Ingber. 2014. ‘Microfluidic organs-on-chips’, Nat Biotechnol, 32: 760–72.

    CAS  PubMed  Google Scholar 

  21. Białkowska, K., P. Komorowski, M. Bryszewska, and K. Miłowska. 2020. ‘Spheroids as a Type of Three-Dimensional Cell Cultures-Examples of Methods of Preparation and the Most Important Application’, Int J Mol Sci, 21.

    Google Scholar 

  22. Bluhmki, T., S. Traub, A. K. Muller, S. Bitzer, E. Schruf, M. T. Bammert, M. Leist, F. Gantner, J. P. Garnett, and R. Heilker. 2021. ‘Functional human iPSC-derived alveolar-like cells cultured in a miniaturized 96Transwell air-liquid interface model’, Sci Rep, 11: 17028.

    CAS  PubMed  PubMed Central  Google Scholar 

  23. Bodas, Manish, Andrew R. Moore, Bharathiraja Subramaniyan, Constantin Georgescu, Jonathan D. Wren, Willard M. Freeman, Brent R. Brown, Jordan P. Metcalf, and Matthew S. Walters. 2021. ‘Cigarette Smoke Activates NOTCH3 to Promote Goblet Cell Differentiation in Human Airway Epithelial Cells’, American Journal of Respiratory Cell and Molecular Biology, 64: 426–40.

    CAS  PubMed  PubMed Central  Google Scholar 

  24. Booth, A. J., R. Hadley, A. M. Cornett, A. A. Dreffs, S. A. Matthes, J. L. Tsui, K. Weiss, J. C. Horowitz, V. F. Fiore, T. H. Barker, B. B. Moore, F. J. Martinez, L. E. Niklason, and E. S. White. 2012. ‘Acellular normal and fibrotic human lung matrices as a culture system for in vitro investigation’, Am J Respir Crit Care Med, 186: 866–76.

    CAS  PubMed  PubMed Central  Google Scholar 

  25. Brechbuhl, H. M., M. Ghosh, M. K. Smith, R. W. Smith, B. Li, D. A. Hicks, B. B. Cole, P. R. Reynolds, and S. D. Reynolds. 2011. ‘beta-catenin dosage is a critical determinant of tracheal basal cell fate determination’, Am J Pathol, 179: 367–79.

    PubMed  PubMed Central  Google Scholar 

  26. Burgess, J. K., M. R. Jonker, M. Berg, N. T. H. Ten Hacken, K. B. Meyer, M. van den Berge, M. C. Nawijn, and I. H. Heijink. 2021. ‘Periostin: contributor to abnormal airway epithelial function in asthma?’, Eur Respir J, 57.

    Google Scholar 

  27. Burgess, J. K., T. Mauad, G. Tjin, J. C. Karlsson, and G. Westergren-Thorsson. 2016. ‘The extracellular matrix – the under-recognized element in lung disease?’, J Pathol, 240: 397–409.

    CAS  PubMed  PubMed Central  Google Scholar 

  28. Burgess, J. K., and G. Tjin. 2015. ‘Extracellular Matrix Specification of Regenerative Cells in the Adult Lung’, Stem Cells in the Lung: Development, Repair and Regeneration: 169–89.

    Google Scholar 

  29. Burgstaller, G., B. Oehrle, M. Gerckens, E. S. White, H. B. Schiller, and O. Eickelberg. 2017. ‘The instructive extracellular matrix of the lung: basic composition and alterations in chronic lung disease’, Eur Respir J, 50.

    Google Scholar 

  30. Busch, S. M., Z. Lorenzana, and A. L. Ryan. 2021. ‘Implications for Extracellular Matrix Interactions With Human Lung Basal Stem Cells in Lung Development, Disease, and Airway Modeling’, Front Pharmacol, 12: 645858.

    CAS  PubMed  PubMed Central  Google Scholar 

  31. Bustamante-Marin, X. M., and L. E. Ostrowski. 2017. ‘Cilia and Mucociliary Clearance’, Cold Spring Harb Perspect Biol, 9.

    Google Scholar 

  32. Butler, C. R., R. E. Hynds, K. H. Gowers, H. Lee Ddo, J. M. Brown, C. Crowley, V. H. Teixeira, C. M. Smith, L. Urbani, N. J. Hamilton, R. M. Thakrar, H. L. Booth, M. A. Birchall, P. De Coppi, A. Giangreco, C. O’Callaghan, and S. M. Janes. 2016. ‘Rapid Expansion of Human Epithelial Stem Cells Suitable for Airway Tissue Engineering’, Am J Respir Crit Care Med, 194: 156–68.

    CAS  PubMed  PubMed Central  Google Scholar 

  33. Calhoun, C., P. Shivshankar, M. Saker, L. B. Sloane, C. B. Livi, Z. D. Sharp, C. J. Orihuela, S. Adnot, E. S. White, A. Richardson, and C. J. Le Saux. 2016. ‘Senescent Cells Contribute to the Physiological Remodeling of Aged Lungs’, J Gerontol A Biol Sci Med Sci, 71: 153–60.

    CAS  PubMed  Google Scholar 

  34. Calvert, B. A., and A. L. Ryan Firth. 2020. ‘Application of iPSC to Modelling of Respiratory Diseases’, Adv Exp Med Biol, 1237: 1–16.

    CAS  PubMed  PubMed Central  Google Scholar 

  35. Carraro, G., J. Langerman, S. Sabri, Z. Lorenzana, A. Purkayastha, G. Zhang, B. Konda, C. J. Aros, B. A. Calvert, A. Szymaniak, E. Wilson, M. Mulligan, P. Bhatt, J. Lu, P. Vijayaraj, C. Yao, D. W. Shia, A. J. Lund, E. Israely, T. M. Rickabaugh, J. Ernst, M. Mense, S. H. Randell, E. K. Vladar, A. L. Ryan, K. Plath, J. E. Mahoney, B. R. Stripp, and B. N. Gomperts. 2021. ‘Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition’, Nat Med, 27: 806–14.

    CAS  PubMed  PubMed Central  Google Scholar 

  36. Castillon, N., J. Hinnrasky, J. M. Zahm, H. Kaplan, N. Bonnet, P. Corlieu, J. M. Klossek, K. Taouil, A. Avril-Delplanque, B. Péault, and E. Puchelle. 2002. ‘Polarized expression of cystic fibrosis transmembrane conductance regulator and associated epithelial proteins during the regeneration of human airway surface epithelium in three-dimensional culture’, Lab Invest, 82: 989–98.

    CAS  PubMed  Google Scholar 

  37. Chaudhary, N., A. Jayaraman, C. Reinhardt, J. D. Campbell, and M. Bosmann. 2022. ‘A single-cell lung atlas of complement genes identifies the mesothelium and epithelium as prominent sources of extrahepatic complement proteins’, Mucosal Immunol, 15: 927–39.

    CAS  PubMed  PubMed Central  Google Scholar 

  38. Chen, Q., and Y. Liu. 2020. ‘Heterogeneous groups of alveolar type II cells in lung homeostasis and repair’, Am J Physiol Cell Physiol, 319: C991–C96.

    CAS  PubMed  PubMed Central  Google Scholar 

  39. Chen, Y.-W., S. X. Huang, A. L. R. T. de Carvalho, S.-H. Ho, M. N. Islam, S. Volpi, L. D. Notarangelo, M. Ciancanelli, J.-L. Casanova, J. Bhattacharya, A. F. Liang, L. M. Palermo, M. Porotto, A. Moscona, and H.-W. Snoeck. 2017. ‘A three-dimensional model of human lung development and disease from pluripotent stem cells’, Nature Cell Biology, 19: 542–49.

    CAS  PubMed  PubMed Central  Google Scholar 

  40. Cheng, G., T. Ueda, T. Numao, Y. Kuroki, H. Nakajima, Y. Fukushima, S. Motojima, and T. Fukuda. 2000. ‘Increased levels of surfactant protein A and D in bronchoalveolar lavage fluids in patients with bronchial asthma’, Eur Respir J, 16: 831–5.

    CAS  PubMed  Google Scholar 

  41. Choksi, S. P., G. Lauter, P. Swoboda, and S. Roy. 2014. ‘Switching on cilia: transcriptional networks regulating ciliogenesis’, Development, 141: 1427–41.

    CAS  PubMed  Google Scholar 

  42. Cidem, A., P. Bradbury, D. Traini, and H. X. Ong. 2020. ‘Modifying and Integrating in vitro and ex vivo Respiratory Models for Inhalation Drug Screening’, Front Bioeng Biotechnol, 8: 581995.

    PubMed  PubMed Central  Google Scholar 

  43. Ciechanowicz, A. 2019. ‘Stem Cells in Lungs’, Adv Exp Med Biol, 1201: 261–74.

    CAS  PubMed  Google Scholar 

  44. Copreni, E., S. Castellani, A. Bagnacani, A. Colombo, T. Rizzuti, S. Di Gioia, C. Colombo, and M. Conese. 2010. ‘Bacterial internalization is not sufficient to clear Pseudomonas aeruginosa infection in human fetal airway xenografts’, Med Sci Monit, 16: BR361–6.

    Google Scholar 

  45. Cores, J., M. T. Hensley, K. Kinlaw, S. M. Rikard, P. U. Dinh, D. Paudel, J. Tang, A. C. Vandergriff, T. A. Allen, Y. Li, J. Liu, B. Niu, Y. Chi, T. Caranasos, L. J. Lobo, and K. Cheng. 2017. ‘Safety and Efficacy of Allogeneic Lung Spheroid Cells in a Mismatched Rat Model of Pulmonary Fibrosis’, Stem Cells Transl Med, 6: 1905–16.

    PubMed  PubMed Central  Google Scholar 

  46. Crystal, R. G., S. H. Randell, J. F. Engelhardt, J. Voynow, and M. E. Sunday. 2008. ‘Airway epithelial cells: current concepts and challenges’, Proc Am Thorac Soc, 5: 772–7.

    PubMed  PubMed Central  Google Scholar 

  47. Dabaghi, M., N. Saraei, M. B. Carpio, V. Nanduri, J. Ungureanu, M. Babi, A. Chandiramohan, A. Noble, S. D. Revill, B. Zhang, K. Ask, M. Kolb, Y. Shargall, J. Moran-Mirabal, and J. A. Hirota. 2021. ‘A Robust Protocol for Decellularized Human Lung Bioink Generation Amenable to 2D and 3D Lung Cell Culture’, Cells, 10: 1538.

    CAS  PubMed  PubMed Central  Google Scholar 

  48. Dajani, R., Y. Zhang, P. J. Taft, S. M. Travis, T. D. Starner, A. Olsen, J. Zabner, M. J. Welsh, and J. F. Engelhardt. 2005. ‘Lysozyme secretion by submucosal glands protects the airway from bacterial infection’, Am J Respir Cell Mol Biol, 32: 548–52.

    CAS  PubMed  PubMed Central  Google Scholar 

  49. de la Grange, P., A. Jolly, C. Courageux, C. Ben Brahim, and P. Leroy. 2021. ‘Genes coding for transcription factors involved in stem cell maintenance are repressed by TGF-beta and downstream of Slug/Snail2 in COPD bronchial epithelial progenitors’, Mol Biol Rep, 48: 6729–38.

    PubMed  Google Scholar 

  50. Dekkers, J. F., R. A. Gogorza Gondra, E. Kruisselbrink, A. M. Vonk, H. M. Janssens, K. M. de Winter-de Groot, C. K. van der Ent, and J. M. Beekman. 2016. ‘Optimal correction of distinct CFTR folding mutants in rectal cystic fibrosis organoids’, Eur Respir J, 48: 451–8.

    Google Scholar 

  51. Deprez, M., L. E. Zaragosi, M. Truchi, C. Becavin, S. Ruiz Garcia, M. J. Arguel, M. Plaisant, V. Magnone, K. Lebrigand, S. Abelanet, F. Brau, A. Paquet, D. Pe’er, C. H. Marquette, S. Leroy, and P. Barbry. 2020. ‘A Single-Cell Atlas of the Human Healthy Airways’, Am J Respir Crit Care Med, 202: 1636–45.

    CAS  PubMed  Google Scholar 

  52. Dernowsek, J. A., R. A. Rezende, V. E. Passamai, P. Y. Noritomi, D. T. Kemmoku, J. A. Nogueira, V. F. Lara, V. Mironov, and J. V. L. da Silva. 2016. ‘Tissue Spheroids Encaged Into Microscaffolds with Internal Structure to Increase Cell Viability’, Procedia CIRP, 49: 174–77.

    Google Scholar 

  53. Diabaté, S., L. Armand, S. Murugadoss, M. Dilger, S. Fritsch-Decker, C. Schlager, D. Béal, M. E. Arnal, M. Biola-Clier, S. Ambrose, S. Mülhopt, H. R. Paur, I. Lynch, E. Valsami-Jones, M. Carriere, and C. Weiss. 2020. ‘Air-Liquid Interface Exposure of Lung Epithelial Cells to Low Doses of Nanoparticles to Assess Pulmonary Adverse Effects’, Nanomaterials (Basel), 11.

    Google Scholar 

  54. Duan, X., X. Tang, M. S. Nair, T. Zhang, Y. Qiu, W. Zhang, P. Wang, Y. Huang, J. Xiang, H. Wang, R. E. Schwartz, D. D. Ho, T. Evans, and S. Chen. 2021. ‘An airway organoid-based screen identifies a role for the HIF1alpha-glycolysis axis in SARS-CoV-2 infection’, Cell Rep, 37: 109920.

    CAS  PubMed  PubMed Central  Google Scholar 

  55. Duclos, G. E., V. H. Teixeira, P. Autissier, Y. B. Gesthalter, M. A. Reinders-Luinge, R. Terrano, Y. M. Dumas, G. Liu, S. A. Mazzilli, C. A. Brandsma, M. van den Berge, S. M. Janes, W. Timens, M. E. Lenburg, A. Spira, J. D. Campbell, and J. Beane. 2019. ‘Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution’, Sci Adv, 5: eaaw3413.

    Google Scholar 

  56. Dupuit, F., D. Gaillard, J. Hinnrasky, E. Mongodin, S. de Bentzmann, E. Copreni, and E. Puchelle. 2000. ‘Differentiated and functional human airway epithelium regeneration in tracheal xenografts’, Am J Physiol Lung Cell Mol Physiol, 278: L165–76.

    CAS  PubMed  Google Scholar 

  57. Dy, A. B. C., S. Tanyaratsrisakul, D. R. Voelker, and J. G. Ledford. 2018. ‘The Emerging Roles of Surfactant Protein-A in Asthma’, J Clin Cell Immunol, 9.

    Google Scholar 

  58. Dye, B. R., J. T. Decker, R. F. C. Hein, A. J. Miller, S. Huang, J. R. Spence, and L. D. Shea. 2022. ‘Human Lung Organoid Culture in Alginate With and Without Matrigel to Model Development and Disease’, Tissue Eng Part A.

    Google Scholar 

  59. Dye, B. R., D. R. Hill, M. A. Ferguson, Y. H. Tsai, M. S. Nagy, R. Dyal, J. M. Wells, C. N. Mayhew, R. Nattiv, O. D. Klein, E. S. White, G. H. Deutsch, and J. R. Spence. 2015. ‘In vitro generation of human pluripotent stem cell derived lung organoids’, Elife, 4.

    Google Scholar 

  60. Engelhardt, J. F., H. Schlossberg, J. R. Yankaskas, and L. Dudus. 1995. ‘Progenitor cells of the adult human airway involved in submucosal gland development’, Development, 121: 2031–46.

    CAS  PubMed  Google Scholar 

  61. Engelhardt, J. F., J. R. Yankaskas, and J. M. Wilson. 1992. ‘In vivo retroviral gene transfer into human bronchial epithelia of xenografts’, J Clin Invest, 90: 2598–607.

    CAS  PubMed  PubMed Central  Google Scholar 

  62. Engler, A. E., G. Mostoslavsky, L. Miller, and J. R. Rock. 2019. ‘Isolation, Maintenance and Differentiation of Primary Tracheal Basal Cells from Adult Rhesus Macaque’, Methods Protoc, 2.

    Google Scholar 

  63. Engler, A. E., A. B. Ysasi, R. M. F. Pihl, C. Villacorta-Martin, H. M. Heston, H. M. K. Richardson, B. R. Thapa, N. R. Moniz, A. C. Belkina, S. A. Mazzilli, and J. R. Rock. 2020. ‘Airway-Associated Macrophages in Homeostasis and Repair’, Cell Rep, 33: 108553.

    CAS  PubMed  PubMed Central  Google Scholar 

  64. Escotte, S., C. Catusse, C. Coraux, and E. Puchelle. 2004. ‘Reconstitution of human airway tissue in the humanized xenograft model’, J Cyst Fibros, 3 Suppl 2: 63–5.

    CAS  PubMed  Google Scholar 

  65. Estany, S., V. Vicens-Zygmunt, R. Llatjos, A. Montes, R. Penin, I. Escobar, A. Xaubet, S. Santos, F. Manresa, J. Dorca, and M. Molina-Molina. 2014. ‘Lung fibrotic tenascin-C upregulation is associated with other extracellular matrix proteins and induced by TGFbeta1’, BMC Pulm Med, 14: 120.

    PubMed  PubMed Central  Google Scholar 

  66. Eurlings, I. M., M. A. Dentener, E. M. Mercken, R. de Cabo, K. R. Bracke, J. H. Vernooy, E. F. Wouters, and N. L. Reynaert. 2014. ‘A comparative study of matrix remodeling in chronic models for COPD; mechanistic insights into the role of TNF-alpha’, Am J Physiol Lung Cell Mol Physiol, 307: L557–65.

    CAS  PubMed  PubMed Central  Google Scholar 

  67. Ewis, A. A., K. Kondo, F. Dang, Y. Nakahori, Y. Shinohara, M. Ishikawa, and Y. Baba. 2006. ‘Surfactant protein B gene variations and susceptibility to lung cancer in chromate workers’, Am J Ind Med, 49: 367–73.

    CAS  PubMed  Google Scholar 

  68. Fahy, J. V. 2002. ‘Goblet cell and mucin gene abnormalities in asthma’, Chest, 122: 320S–26S.

    CAS  PubMed  Google Scholar 

  69. Fahy, J. V., and B. F. Dickey. 2010. ‘Airway mucus function and dysfunction’, N Engl J Med, 363: 2233–47.

    CAS  PubMed  PubMed Central  Google Scholar 

  70. Filali, M., Y. Zhang, T. C. Ritchie, and J. F. Engelhardt. 2002. ‘Xenograft model of the CF airway’, Methods Mol Med, 70: 537–50.

    PubMed  Google Scholar 

  71. Firth, A. L., C. T. Dargitz, S. J. Qualls, T. Menon, R. Wright, O. Singer, F. H. Gage, A. Khanna, and I. M. Verma. 2014. ‘Generation of multiciliated cells in functional airway epithelia from human induced pluripotent stem cells’, Proc Natl Acad Sci U S A, 111: E1723–30.

    Google Scholar 

  72. Firth, A. L., T. Menon, G. S. Parker, S. J. Qualls, B. M. Lewis, E. Ke, C. T. Dargitz, R. Wright, A. Khanna, F. H. Gage, and I. M. Verma. 2015. ‘Functional Gene Correction for Cystic Fibrosis in Lung Epithelial Cells Generated from Patient iPSCs’, Cell Rep, 12: 1385–90.

    CAS  PubMed  PubMed Central  Google Scholar 

  73. Francisco, D., Y. Wang, M. Conway, A. N. Hurbon, A. B. C. Dy, K. J. Addison, H. W. Chu, D. R. Voelker, J. G. Ledford, and M. Kraft. 2020. ‘Surfactant Protein-A Protects against IL-13-Induced Inflammation in Asthma’, J Immunol, 204: 2829–39.

    CAS  PubMed  Google Scholar 

  74. Fulcher, M. L., and S. H. Randell. 2013. ‘Human nasal and tracheo-bronchial respiratory epithelial cell culture’, Methods Mol Biol, 945: 109–21.

    PubMed  Google Scholar 

  75. Garrido-Jimenez, S., J. F. Barrera-Lopez, S. Diaz-Chamorro, C. M. Mateos-Quiros, I. Rodriguez-Blanco, F. L. Marquez-Perez, M. J. Lorenzo, F. Centeno, A. C. Roman, and J. M. Carvajal-Gonzalez. 2021. ‘p53 regulation by MDM2 contributes to self-renewal and differentiation of basal stem cells in mouse and human airway epithelium’, FASEB J, 35: e21816.

    CAS  PubMed  Google Scholar 

  76. Ghosh, M., H. M. Brechbuhl, R. W. Smith, B. Li, D. A. Hicks, T. Titchner, C. M. Runkle, and S. D. Reynolds. 2011. ‘Context-dependent differentiation of multipotential keratin 14-expressing tracheal basal cells’, Am J Respir Cell Mol Biol, 45: 403–10.

    CAS  PubMed  Google Scholar 

  77. Ghosh, M., C. L. Hill, A. Alsudayri, S. W. Lallier, D. Hayes, Jr., S. Wijeratne, Z. H. Tan, T. Chiang, J. E. Mahoney, G. Carraro, B. R. Stripp, and S. D. Reynolds. 2021. ‘Repeated injury promotes tracheobronchial tissue stem cell attrition’, Stem Cells Transl Med, 10: 1696–713.

    CAS  PubMed  PubMed Central  Google Scholar 

  78. Giangreco, A., L. Lu, C. Vickers, V. H. Teixeira, K. R. Groot, C. R. Butler, E. V. Ilieva, P. J. George, A. G. Nicholson, E. K. Sage, F. M. Watt, and S. M. Janes. 2012. ‘β-Catenin determines upper airway progenitor cell fate and preinvasive squamous lung cancer progression by modulating epithelial-mesenchymal transition’, J Pathol, 226: 575–87.

    CAS  PubMed  PubMed Central  Google Scholar 

  79. Gilpin, S. E., Q. Li, D. Evangelista-Leite, X. Ren, D. P. Reinhardt, B. L. Frey, and H. C. Ott. 2017. ‘Fibrillin-2 and Tenascin-C bridge the age gap in lung epithelial regeneration’, Biomaterials, 140: 212–19.

    CAS  PubMed  PubMed Central  Google Scholar 

  80. Giuranno, L., C. Wansleeben, R. Iannone, L. Arathoon, J. Hounjet, A. J. Groot, and M. Vooijs. 2019. ‘NOTCH signaling promotes the survival of irradiated basal airway stem cells’, Am J Physiol Lung Cell Mol Physiol, 317: L414–L23.

    CAS  PubMed  Google Scholar 

  81. Goldfarbmuren, K. C., N. D. Jackson, S. P. Sajuthi, N. Dyjack, K. S. Li, C. L. Rios, E. G. Plender, M. T. Montgomery, J. L. Everman, P. E. Bratcher, E. K. Vladar, and M. A. Seibold. 2020. ‘Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium’, Nat Commun, 11: 2485.

    CAS  PubMed  PubMed Central  Google Scholar 

  82. Goldman, M. J., Y. Yang, and J. M. Wilson. 1995. ‘Gene therapy in a xenograft model of cystic fibrosis lung corrects chloride transport more effectively than the sodium defect’, Nat Genet, 9: 126–31.

    CAS  PubMed  Google Scholar 

  83. Goto, H., A. Mitsuhashi, and Y. Nishioka. 2014. ‘Role of surfactant protein A in non-infectious lung diseases’, J Med Invest, 61: 1–6.

    PubMed  Google Scholar 

  84. Graeber, Simon Y., Peter van Mourik, Annelotte M. Vonk, Evelien Kruisselbrink, Stephanie Hirtz, Cornelis K. van der Ent, Marcus A. Mall, and Jeffrey M. Beekman. 2020. ‘Comparison of Organoid Swelling and In Vivo Biomarkers of CFTR Function to Determine Effects of Lumacaftor–Ivacaftor in Patients with Cystic Fibrosis Homozygous for the F508del Mutation’, American Journal of Respiratory and Critical Care Medicine, 202: 1589–92.

    Google Scholar 

  85. Greaney, A. M., T. S. Adams, M. S. Brickman Raredon, E. Gubbins, J. C. Schupp, A. J. Engler, M. Ghaedi, Y. Yuan, N. Kaminski, and L. E. Niklason. 2020. ‘Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing’, Cell Rep, 30: 4250–65 e6.

    CAS  PubMed  PubMed Central  Google Scholar 

  86. Groneberg, D. A., P. R. Eynott, T. Oates, S. Lim, R. Wu, I. Carlstedt, A. G. Nicholson, and K. F. Chung. 2002. ‘Expression of MUC5AC and MUC5B mucins in normal and cystic fibrosis lung’, Respir Med, 96: 81–6.

    CAS  PubMed  Google Scholar 

  87. Guha, A., A. Deshpande, A. Jain, P. Sebastiani, and W. V. Cardoso. 2017. ‘Uroplakin 3a(+) Cells Are a Distinctive Population of Epithelial Progenitors that Contribute to Airway Maintenance and Post-injury Repair’, Cell Rep, 19: 246–54.

    CAS  PubMed  Google Scholar 

  88. Guihaire, J., R. Itagaki, M. Stubbendorff, X. Hua, T. Deuse, S. Ullrich, E. Fadel, P. Dorfmuller, R. C. Robbins, H. Reichenspurner, U. Schumacher, and S. Schrepfer. 2016. ‘Orthotopic tracheal transplantation using human bronchus: an original xenotransplant model of obliterative airway disorder’, Transpl Int, 29: 1337–48.

    CAS  PubMed  Google Scholar 

  89. Hackett, T. L., S. C. Ferrante, C. E. Hoptay, J. F. Engelhardt, J. L. Ingram, Y. Zhang, S. E. Alcala, F. Shaheen, E. Matz, D. K. Pillai, and R. J. Freishtat. 2017. ‘A Heterotopic Xenograft Model of Human Airways for Investigating Fibrosis in Asthma’, Am J Respir Cell Mol Biol, 56: 291–99.

    CAS  PubMed  PubMed Central  Google Scholar 

  90. Hackett, T. L., and E. T. Osei. 2021. ‘Modeling Extracellular Matrix-Cell Interactions in Lung Repair and Chronic Disease’, Cells, 10: 2145.

    CAS  PubMed  PubMed Central  Google Scholar 

  91. Han, Kyuho, Sarah E. Pierce, Amy Li, Kaitlyn Spees, Gray R. Anderson, Jose A. Seoane, Yuan-Hung Lo, Michael Dubreuil, Micah Olivas, Roarke A. Kamber, Michael Wainberg, Kaja Kostyrko, Marcus R. Kelly, Maryam Yousefi, Scott W. Simpkins, David Yao, Keonil Lee, Calvin J. Kuo, Peter K. Jackson, Alejandro Sweet-Cordero, Anshul Kundaje, Andrew J. Gentles, Christina Curtis, Monte M. Winslow, and Michael C. Bassik. 2020. ‘CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities’, Nature, 580: 136–41.

    CAS  PubMed  PubMed Central  Google Scholar 

  92. Haq, I., M. Almulhem, S. Soars, D. Poulton, and M. Brodlie. 2022. ‘Precision Medicine Based on CFTR Genotype for People with Cystic Fibrosis’, Pharmgenomics Pers Med, 15: 91–104.

    CAS  PubMed  PubMed Central  Google Scholar 

  93. Harford, T. J., F. Rezaee, B. R. Dye, J. Fan, J. R. Spence, and G. Piedimonte. 2022. ‘RSV-induced changes in a 3-dimensional organoid model of human fetal lungs’, PLoS One, 17: e0265094.

    CAS  PubMed  PubMed Central  Google Scholar 

  94. Harris, J. E., Jr., J. Shin, B. Lee, K. Pelosky, C. M. Hooker, K. Harbom, A. Hulbert, C. Zahnow, S. C. Yang, S. Baylin, C. Brayton, and M. V. Brock. 2011. ‘A murine xenograft model of spontaneous metastases of human lung adenocarcinoma’, J Surg Res, 171: e75–9.

    PubMed  PubMed Central  Google Scholar 

  95. Hawkins, F. J., and D. N. Kotton. 2018. ‘Pulmonary Ionocytes Challenge the Paradigm in Cystic Fibrosis’, Trends Pharmacol Sci, 39: 852–54.

    CAS  PubMed  Google Scholar 

  96. Hawkins, F. J., S. Suzuki, M. L. Beermann, C. Barilla, R. Wang, C. Villacorta-Martin, A. Berical, J. C. Jean, J. Le Suer, T. Matte, C. Simone-Roach, Y. Tang, T. M. Schlaeger, A. M. Crane, N. Matthias, S. X. L. Huang, S. H. Randell, J. Wu, J. R. Spence, G. Carraro, B. R. Stripp, A. Rab, E. J. Sorsher, A. Horani, S. L. Brody, B. R. Davis, and D. N. Kotton. 2021. ‘Derivation of Airway Basal Stem Cells from Human Pluripotent Stem Cells’, Cell Stem Cell, 28: 79–95 e8.

    CAS  PubMed  Google Scholar 

  97. Hawkins, F., and D. N. Kotton. 2015. ‘Embryonic and induced pluripotent stem cells for lung regeneration’, Ann Am Thorac Soc, 12 Suppl 1: S50–3.

    Google Scholar 

  98. Hegab, A. E., V. L. Ha, D. O. Darmawan, J. L. Gilbert, A. T. Ooi, Y. S. Attiga, B. Bisht, D. W. Nickerson, and B. N. Gomperts. 2012. ‘Isolation and in vitro characterization of basal and submucosal gland duct stem/progenitor cells from human proximal airways’, Stem Cells Transl Med, 1: 719–24.

    CAS  PubMed  PubMed Central  Google Scholar 

  99. Hein, Renee F. C., Ansley S. Conchola, Alexis S. Fine, Zhiwei Xiao, Tristan Frum, Lindy K. Brastrom, Mayowa A. Akinwale, Charlie J. Childs, Yu-Hwai Tsai, Emily M. Holloway, Sha Huang, John Mahoney, Idse Heemskerk, and Jason R. Spence. 2022. ‘Stable iPSC-derived NKX2-1+ lung bud tip progenitor organoids give rise to airway and alveolar cell types’, Development, 149.

    Google Scholar 

  100. Henry, O. Y. F., R. Villenave, M. J. Cronce, W. D. Leineweber, M. A. Benz, and D. E. Ingber. 2017. ‘Organs-on-chips with integrated electrodes for trans-epithelial electrical resistance (TEER) measurements of human epithelial barrier function’, Lab Chip, 17: 2264–71.

    CAS  PubMed  PubMed Central  Google Scholar 

  101. Hewitt, R. J., and C. M. Lloyd. 2021. ‘Regulation of immune responses by the airway epithelial cell landscape’, Nat Rev Immunol, 21: 347–62.

    CAS  PubMed  PubMed Central  Google Scholar 

  102. Hiemstra, P. S., T. D. Tetley, and S. M. Janes. 2019. ‘Airway and alveolar epithelial cells in culture’, Eur Respir J, 54.

    Google Scholar 

  103. Hild, M., and A. B. Jaffe. 2016. ‘Production of 3-D Airway Organoids From Primary Human Airway Basal Cells and Their Use in High-Throughput Screening’, Curr Protoc Stem Cell Biol, 37: IE 9 1–IE 9 15.

    Google Scholar 

  104. Hinz, B. 2012. ‘Mechanical aspects of lung fibrosis: a spotlight on the myofibroblast’, Proc Am Thorac Soc, 9: 137–47.

    CAS  PubMed  Google Scholar 

  105. Hofer, M., and M. P. Lutolf. 2021. ‘Engineering organoids’, Nat Rev Mater, 6: 402–20.

    CAS  PubMed  PubMed Central  Google Scholar 

  106. Huh, D. D. 2015. ‘A human breathing lung-on-a-chip’, Ann Am Thorac Soc, 12 Suppl 1: S42–4.

    Google Scholar 

  107. Hung, C. H., L. C. Chen, Z. Zhang, B. Chowdhury, W. L. Lee, B. Plunkett, C. H. Chen, A. C. Myers, and S. K. Huang. 2004. ‘Regulation of TH2 responses by the pulmonary Clara cell secretory 10-kd protein’, J Allergy Clin Immunol, 114: 664–70.

    CAS  PubMed  Google Scholar 

  108. Hurskainen, M., I. Mizikova, D. P. Cook, N. Andersson, C. Cyr-Depauw, F. Lesage, E. Helle, L. Renesme, R. P. Jankov, M. Heikinheimo, B. C. Vanderhyden, and B. Thebaud. 2021. ‘Single cell transcriptomic analysis of murine lung development on hyperoxia-induced damage’, Nat Commun, 12: 1565.

    CAS  PubMed  PubMed Central  Google Scholar 

  109. Hussain, M., C. Xu, M. Lu, X. Wu, L. Tang, and X. Wu. 2017. ‘Wnt/β-catenin signaling links embryonic lung development and asthmatic airway remodeling’, Biochim Biophys Acta Mol Basis Dis, 1863: 3226–42.

    CAS  PubMed  Google Scholar 

  110. Hynds, R. E., C. R. Butler, S. M. Janes, and A. Giangreco. 2019. ‘Expansion of Human Airway Basal Stem Cells and Their Differentiation as 3D Tracheospheres’, Methods Mol Biol, 1576: 43–53.

    CAS  PubMed  Google Scholar 

  111. Hynes, R. O., and A. Naba. 2012. ‘Overview of the matrisome – an inventory of extracellular matrix constituents and functions’, Cold Spring Harb Perspect Biol, 4: a004903.

    Google Scholar 

  112. Ikegami, M., J. A. Whitsett, P. C. Martis, and T. E. Weaver. 2005. ‘Reversibility of lung inflammation caused by SP-B deficiency’, Am J Physiol Lung Cell Mol Physiol, 289: L962–70.

    Google Scholar 

  113. Izadifar, Z., A. Sontheimer-Phelps, B. A. Lubamba, H. Bai, C. Fadel, A. Stejskalova, A. Ozkan, Q. Dasgupta, A. Bein, A. Junaid, A. Gulati, G. Mahajan, S. Kim, N. T. LoGrande, A. Naziripour, and D. E. Ingber. 2022. ‘Modeling mucus physiology and pathophysiology in human organs-on-chips’, Adv Drug Deliv Rev, 191: 114542.

    CAS  PubMed  Google Scholar 

  114. Jackson, N. D., J. L. Everman, M. Chioccioli, L. Feriani, K. C. Goldfarbmuren, S. P. Sajuthi, C. L. Rios, R. Powell, M. Armstrong, J. Gomez, C. Michel, C. Eng, S. S. Oh, J. Rodriguez-Santana, P. Cicuta, N. Reisdorph, E. G. Burchard, and M. A. Seibold. 2020. ‘Single-Cell and Population Transcriptomics Reveal Pan-epithelial Remodeling in Type 2-High Asthma’, Cell Rep, 32: 107872.

    CAS  PubMed  PubMed Central  Google Scholar 

  115. Jacob, A., M. Morley, F. Hawkins, K. B. McCauley, J. C. Jean, H. Heins, C. L. Na, T. E. Weaver, M. Vedaie, K. Hurley, A. Hinds, S. J. Russo, S. Kook, W. Zacharias, M. Ochs, K. Traber, L. J. Quinton, A. Crane, B. R. Davis, F. V. White, J. Wambach, J. A. Whitsett, F. S. Cole, E. E. Morrisey, S. H. Guttentag, M. F. Beers, and D. N. Kotton. 2017. ‘Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells’, Cell Stem Cell, 21: 472–88 e10.

    CAS  PubMed  PubMed Central  Google Scholar 

  116. Jain, Manu, and J. Iasha Sznajder. 2007. ‘Bench-to-bedside review: Distal airways in acute respiratory distress syndrome’, Critical Care, 11: 206.

    PubMed  PubMed Central  Google Scholar 

  117. Jensen-Cody, C. W., A. K. Crooke, P. G. Rotti, V. Ievlev, W. Shahin, S. Y. Park, T. J. Lynch, and J. F. Engelhardt. 2021. ‘Lef-1 controls cell cycle progression in airway basal cells to regulate proliferation and differentiation’, Stem Cells, 39: 1221–35.

    CAS  PubMed  Google Scholar 

  118. Johansson, S. L., Q. Tan, R. Holst, L. Christiansen, N. C. Hansen, A. T. Hojland, H. Wulf-Johansson, A. Schlosser, I. L. Titlestad, J. Vestbo, U. Holmskov, K. O. Kyvik, and G. L. Sorensen. 2014. ‘Surfactant protein D is a candidate biomarker for subclinical tobacco smoke-induced lung damage’, Am J Physiol Lung Cell Mol Physiol, 306: L887–95.

    Google Scholar 

  119. Kathiriya, J. J., A. N. Brumwell, J. R. Jackson, X. Tang, and H. A. Chapman. 2020. ‘Distinct Airway Epithelial Stem Cells Hide among Club Cells but Mobilize to Promote Alveolar Regeneration’, Cell Stem Cell, 26: 346–58 e4.

    CAS  PubMed  PubMed Central  Google Scholar 

  120. Kato, K., E. H. Chang, Y. Chen, W. Lu, M. M. Kim, M. Niihori, L. Hecker, and K. C. Kim. 2020. ‘MUC1 contributes to goblet cell metaplasia and MUC5AC expression in response to cigarette smoke in vivo’, Am J Physiol Lung Cell Mol Physiol, 319: L82–L90.

    CAS  PubMed  PubMed Central  Google Scholar 

  121. Keswani, S. G., S. Balaji, L. Le, A. Leung, A. B. Katz, F. Y. Lim, M. Habli, H. N. Jones, J. M. Wilson, and T. M. Crombleholme. 2012. ‘Pseudotyped AAV vector-mediated gene transfer in a human fetal trachea xenograft model: implications for in utero gene therapy for cystic fibrosis’, PLoS One, 7: e43633.

    CAS  PubMed  PubMed Central  Google Scholar 

  122. Kibe, A., H. Inoue, S. Fukuyama, K. Machida, K. Matsumoto, H. Koto, T. Ikegami, H. Aizawa, and N. Hara. 2003. ‘Differential regulation by glucocorticoid of interleukin-13-induced eosinophilia, hyperresponsiveness, and goblet cell hyperplasia in mouse airways’, Am J Respir Crit Care Med, 167: 50–6.

    PubMed  Google Scholar 

  123. Kim, V., and G. J. Criner. 2013. ‘Chronic bronchitis and chronic obstructive pulmonary disease’, Am J Respir Crit Care Med, 187: 228–37.

    CAS  PubMed  PubMed Central  Google Scholar 

  124. Kita, K., K. Fukuda, H. Takahashi, A. Tanimoto, A. Nishiyama, S. Arai, S. Takeuchi, K. Yamashita, K. Ohtsubo, S. Otani, N. Yanagimura, C. Suzuki, H. Ikeda, M. Tamura, I. Matsumoto, and S. Yano. 2019. ‘Patient-derived xenograft models of non-small cell lung cancer for evaluating targeted drug sensitivity and resistance’, Cancer Sci, 110: 3215–24.

    CAS  PubMed  PubMed Central  Google Scholar 

  125. Knowles, M. R., and R. C. Boucher. 2002. ‘Mucus clearance as a primary innate defense mechanism for mammalian airways’, J Clin Invest, 109: 571–7.

    CAS  PubMed  PubMed Central  Google Scholar 

  126. Konar, D., M. Devarasetty, D. V. Yildiz, A. Atala, and S. V. Murphy. 2016. ‘Lung-On-A-Chip Technologies for Disease Modeling and Drug Development’, Biomed Eng Comput Biol, 7: 17–27.

    PubMed  PubMed Central  Google Scholar 

  127. Konishi, S., S. Gotoh, K. Tateishi, Y. Yamamoto, Y. Korogi, T. Nagasaki, H. Matsumoto, S. Muro, T. Hirai, I. Ito, S. Tsukita, and M. Mishima. 2016. ‘Directed Induction of Functional Multi-ciliated Cells in Proximal Airway Epithelial Spheroids from Human Pluripotent Stem Cells’, Stem Cell Reports, 6: 18–25.

    CAS  PubMed  Google Scholar 

  128. Kotton, D. N., and E. E. Morrisey. 2014. ‘Lung regeneration: mechanisms, applications and emerging stem cell populations’, Nat Med, 20: 822–32.

    CAS  PubMed  PubMed Central  Google Scholar 

  129. Kumar, V., J. Bariwal, A. S. Narang, J. Tso, J. Cheong, and R. I. Mahato. 2020. ‘Functional similarity of modified cascade impactor to deposit drug particles on cells’, Int J Pharm, 583: 119404.

    CAS  PubMed  Google Scholar 

  130. Lee, J. H., T. Tammela, M. Hofree, J. Choi, N. D. Marjanovic, S. Han, D. Canner, K. Wu, M. Paschini, D. H. Bhang, T. Jacks, A. Regev, and C. F. Kim. 2017. ‘Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6’, Cell, 170: 1149–63 e12.

    CAS  PubMed  PubMed Central  Google Scholar 

  131. Lee, J. Y., J. H. Park, and D. W. Cho. 2018. ‘Comparison of tracheal reconstruction with allograft, fresh xenograft and artificial trachea scaffold in a rabbit model’, J Artif Organs, 21: 325–31.

    CAS  PubMed  Google Scholar 

  132. Lee, R. E., S. M. Miller, T. M. Mascenik, C. A. Lewis, H. Dang, Z. H. Boggs, R. Tarran, and S. H. Randell. 2020. ‘Assessing Human Airway Epithelial Progenitor Cells for Cystic Fibrosis Cell Therapy’, Am J Respir Cell Mol Biol, 63: 374–85.

    CAS  PubMed  PubMed Central  Google Scholar 

  133. Lee, S. N., S. J. Kim, S. A. Yoon, J. M. Song, J. S. Ahn, H. C. Kim, A. M. K. Choi, and J. H. Yoon. 2021. ‘CD44v3-Positive Intermediate Progenitor Cells Contribute to Airway Goblet Cell Hyperplasia’, Am J Respir Cell Mol Biol, 64: 247–59.

    CAS  PubMed  Google Scholar 

  134. Leibel, S. L., R. N. McVicar, A. M. Winquist, W. D. Niles, and E. Y. Snyder. 2020. ‘Generation of Complete Multi-Cell Type Lung Organoids From Human Embryonic and Patient-Specific Induced Pluripotent Stem Cells for Infectious Disease Modeling and Therapeutics Validation’, Curr Protoc Stem Cell Biol, 54: e118.

    CAS  PubMed  PubMed Central  Google Scholar 

  135. Leung, J. M., J. Mayo, W. Tan, C. M. Tammemagi, G. Liu, S. Peacock, F. A. Shepherd, J. Goffin, G. Goss, G. Nicholas, A. Tremblay, M. Johnston, S. Martel, F. Laberge, R. Bhatia, H. Roberts, P. Burrowes, D. Manos, L. Stewart, J. M. Seely, M. Gingras, S. Pasian, M. S. Tsao, S. Lam, D. D. Sin, and Group Pan-Canadian Early Lung Cancer Study. 2015. ‘Plasma pro-surfactant protein B and lung function decline in smokers’, Eur Respir J, 45: 1037–45.

    CAS  PubMed  Google Scholar 

  136. Li, C., N. Peinado, S. M. Smith, J. Zhou, F. Gao, G. Kohbodi, B. Zhou, M. E. Thornton, B. H. Grubbs, M. K. Lee, S. Bellusci, Z. Borok, Y. W. Chen, and P. Minoo. 2022. ‘Wnt5a Promotes AT1 and Represses AT2 Lineage-Specific Gene Expression in a Cell-Context-Dependent Manner’, Stem Cells, 40: 691–703.

    PubMed  PubMed Central  Google Scholar 

  137. Liu, Q., H. Li, Q. Wang, Y. Zhang, W. Wang, S. Dou, and W. Xiao. 2016. ‘Increased expression of TROP2 in airway basal cells potentially contributes to airway remodeling in chronic obstructive pulmonary disease’, Respir Res, 17: 159.

    PubMed  PubMed Central  Google Scholar 

  138. Liu, X., and J. F. Engelhardt. 2008. ‘The glandular stem/progenitor cell niche in airway development and repair’, Proc Am Thorac Soc, 5: 682–8.

    PubMed  PubMed Central  Google Scholar 

  139. Lv, M. Y., L. X. Qiang, B. C. Wang, Y. P. Zhang, Z. H. Li, X. S. Li, L. L. Jin, and S. D. Jin. 2022. ‘Complex Evaluation of Surfactant Protein A and D as Biomarkers for the Severity of COPD’, Int J Chron Obstruct Pulmon Dis, 17: 1537–52.

    PubMed  PubMed Central  Google Scholar 

  140. Lynch, T. J., P. J. Anderson, W. Xie, A. K. Crooke, X. Liu, S. R. Tyler, M. Luo, D. M. Kusner, Y. Zhang, T. Neff, D. C. Burnette, K. S. Walters, M. J. Goodheart, K. R. Parekh, and J. F. Engelhardt. 2016. ‘Wnt Signaling Regulates Airway Epithelial Stem Cells in Adult Murine Submucosal Glands’, Stem Cells, 34: 2758–71.

    CAS  PubMed  Google Scholar 

  141. Lynch, T. J., and J. F. Engelhardt. 2014. ‘Progenitor cells in proximal airway epithelial development and regeneration’, J Cell Biochem, 115: 1637–45.

    CAS  PubMed  PubMed Central  Google Scholar 

  142. Ma, J., B. K. Rubin, and J. A. Voynow. 2018. ‘Mucins, Mucus, and Goblet Cells’, Chest, 154: 169–76.

    PubMed  Google Scholar 

  143. Mackay, R. M., C. L. Grainge, L. C. Lau, C. Barber, H. W. Clark, and P. H. Howarth. 2016. ‘Airway Surfactant Protein D Deficiency in Adults With Severe Asthma’, Chest, 149: 1165–72.

    PubMed  PubMed Central  Google Scholar 

  144. Maestrelli, P., M. Saetta, C. E. Mapp, and L. M. Fabbri. 2001. ‘Remodeling in response to infection and injury. Airway inflammation and hypersecretion of mucus in smoking subjects with chronic obstructive pulmonary disease’, Am J Respir Crit Care Med, 164: S76–80.

    Google Scholar 

  145. Majidinia, M., J. Aghazadeh, R. Jahanban-Esfahlani, and B. Yousefi. 2018. ‘The roles of Wnt/β-catenin pathway in tissue development and regenerative medicine’, J Cell Physiol, 233: 5598–612.

    CAS  PubMed  Google Scholar 

  146. Manevski, M., D. Devadoss, C. Long, S. P. Singh, M. W. Nasser, G. M. Borchert, M. N. Nair, I. Rahman, M. Sopori, and H. S. Chand. 2022. ‘Increased Expression of LASI lncRNA Regulates the Cigarette Smoke and COPD Associated Airway Inflammation and Mucous Cell Hyperplasia’, Front Immunol, 13: 803362.

    CAS  PubMed  PubMed Central  Google Scholar 

  147. McConnell, A. M., C. Yao, A. R. Yeckes, Y. Wang, A. S. Selvaggio, J. Tang, D. G. Kirsch, and B. R. Stripp. 2016. ‘p53 Regulates Progenitor Cell Quiescence and Differentiation in the Airway’, Cell Rep, 17: 2173–82.

    CAS  PubMed  Google Scholar 

  148. McCulley, D., M. Wienhold, and X. Sun. 2015. ‘The pulmonary mesenchyme directs lung development’, Curr Opin Genet Dev, 32: 98–105.

    CAS  PubMed  PubMed Central  Google Scholar 

  149. McQualter, J. L. 2019. ‘Endogenous lung stem cells for lung regeneration’, Expert Opin Biol Ther, 19: 539–46.

    PubMed  Google Scholar 

  150. Menon, T., A. L. Firth, D. D. Scripture-Adams, Z. Galic, S. J. Qualls, W. B. Gilmore, E. Ke, O. Singer, L. S. Anderson, A. R. Bornzin, I. E. Alexander, J. A. Zack, and I. M. Verma. 2015. ‘Lymphoid regeneration from gene-corrected SCID-X1 subject-derived iPSCs’, Cell Stem Cell, 16: 367–72.

    CAS  PubMed  PubMed Central  Google Scholar 

  151. Miles, P. R., L. Bowman, K. M. Rao, J. E. Baatz, and L. Huffman. 1999. ‘Pulmonary surfactant inhibits LPS-induced nitric oxide production by alveolar macrophages’, Am J Physiol, 276: L186–96.

    CAS  PubMed  Google Scholar 

  152. Miller, A. J., B. R. Dye, D. Ferrer-Torres, D. R. Hill, A. W. Overeem, L. D. Shea, and J. R. Spence. 2019. ‘Generation of lung organoids from human pluripotent stem cells in vitro’, Nat Protoc, 14: 518–40.

    CAS  PubMed  PubMed Central  Google Scholar 

  153. Miller, A. J., D. R. Hill, M. S. Nagy, Y. Aoki, B. R. Dye, A. M. Chin, S. Huang, F. Zhu, E. S. White, V. Lama, and J. R. Spence. 2018. ‘In Vitro Induction and In Vivo Engraftment of Lung Bud Tip Progenitor Cells Derived from Human Pluripotent Stem Cells’, Stem Cell Reports, 10: 101–19.

    CAS  PubMed  Google Scholar 

  154. Miller, A. J., Q. Yu, M. Czerwinski, Y. H. Tsai, R. F. Conway, A. Wu, E. M. Holloway, T. Walker, I. A. Glass, B. Treutlein, J. G. Camp, and J. R. Spence. 2020. ‘In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution’, Dev Cell, 53: 117–28 e6.

    CAS  PubMed  PubMed Central  Google Scholar 

  155. Moiseenko, A., A. I. Vazquez-Armendariz, V. Kheirollahi, X. Chu, A. Tata, S. Rivetti, S. Gunther, K. Lebrigand, S. Herold, T. Braun, B. Mari, S. De Langhe, G. Kwapiszewska, A. Gunther, C. Chen, W. Seeger, P. R. Tata, J. S. Zhang, S. Bellusci, and E. El Agha. 2020. ‘Identification of a Repair-Supportive Mesenchymal Cell Population during Airway Epithelial Regeneration’, Cell Rep, 33: 108549.

    CAS  PubMed  PubMed Central  Google Scholar 

  156. Montoro, D. T., A. L. Haber, M. Biton, V. Vinarsky, B. Lin, S. E. Birket, F. Yuan, S. Chen, H. M. Leung, J. Villoria, N. Rogel, G. Burgin, A. M. Tsankov, A. Waghray, M. Slyper, J. Waldman, L. Nguyen, D. Dionne, O. Rozenblatt-Rosen, P. R. Tata, H. Mou, M. Shivaraju, H. Bihler, M. Mense, G. J. Tearney, S. M. Rowe, J. F. Engelhardt, A. Regev, and J. Rajagopal. 2018. ‘A revised airway epithelial hierarchy includes CFTR-expressing ionocytes’, Nature, 560: 319–24.

    CAS  PubMed  PubMed Central  Google Scholar 

  157. Mori, M., J. E. Mahoney, M. R. Stupnikov, J. R. Paez-Cortez, A. D. Szymaniak, X. Varelas, D. B. Herrick, J. Schwob, H. Zhang, and W. V. Cardoso. 2015. ‘Notch3-Jagged signaling controls the pool of undifferentiated airway progenitors’, Development, 142: 258–67.

    CAS  PubMed  PubMed Central  Google Scholar 

  158. Morrisey, E. E., W. V. Cardoso, R. H. Lane, M. Rabinovitch, S. H. Abman, X. Ai, K. H. Albertine, R. D. Bland, H. A. Chapman, W. Checkley, J. A. Epstein, C. R. Kintner, M. Kumar, P. Minoo, T. J. Mariani, D. M. McDonald, Y. S. Mukouyama, L. S. Prince, J. Reese, J. Rossant, W. Shi, X. Sun, Z. Werb, J. A. Whitsett, D. Gail, C. J. Blaisdell, and Q. S. Lin. 2013. ‘Molecular determinants of lung development’, Ann Am Thorac Soc, 10: S12–6.

    Google Scholar 

  159. Morrow, J. D., R. P. Chase, M. M. Parker, K. Glass, M. Seo, M. Divo, C. A. Owen, P. Castaldi, D. L. DeMeo, E. K. Silverman, and C. P. Hersh. 2019. ‘RNA-sequencing across three matched tissues reveals shared and tissue-specific gene expression and pathway signatures of COPD’, Respir Res, 20: 65.

    PubMed  PubMed Central  Google Scholar 

  160. Mou, H., V. Vinarsky, P. R. Tata, K. Brazauskas, S. H. Choi, A. K. Crooke, B. Zhang, G. M. Solomon, B. Turner, H. Bihler, J. Harrington, A. Lapey, C. Channick, C. Keyes, A. Freund, S. Artandi, M. Mense, S. Rowe, J. F. Engelhardt, Y. C. Hsu, and J. Rajagopal. 2016. ‘Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells’, Cell Stem Cell, 19: 217–31.

    CAS  PubMed  PubMed Central  Google Scholar 

  161. Mou, H., Y. Yang, M. A. Riehs, J. Barrios, M. Shivaraju, A. L. Haber, D. T. Montoro, K. Gilmore, E. A. Haas, B. Paunovic, J. Rajagopal, S. O. Vargas, R. L. Haynes, A. Fine, W. V. Cardoso, and X. Ai. 2021. ‘Airway basal stem cells generate distinct subpopulations of PNECs’, Cell Rep, 35: 109011.

    CAS  PubMed  PubMed Central  Google Scholar 

  162. Mucci, A., E. Lopez-Rodriguez, M. Hetzel, S. Liu, T. Suzuki, C. Happle, M. Ackermann, H. Kempf, R. Hillje, J. Kunkiel, E. Janosz, S. Brennig, S. Glage, J. P. Bankstahl, S. Dettmer, T. Rodt, G. Gohring, B. Trapnell, G. Hansen, C. Trapnell, L. Knudsen, N. Lachmann, and T. Moritz. 2018. ‘iPSC-Derived Macrophages Effectively Treat Pulmonary Alveolar Proteinosis in Csf2rb-Deficient Mice’, Stem Cell Reports, 11: 696–710.

    CAS  PubMed  PubMed Central  Google Scholar 

  163. Murray, L. A. 2012. ‘Commonalities between the pro-fibrotic mechanisms in COPD and IPF’, Pulm Pharmacol Ther, 25: 276–80.

    CAS  PubMed  Google Scholar 

  164. Nakajima, M., O. Kawanami, E. Jin, M. Ghazizadeh, M. Honda, G. Asano, K. Horiba, and V. J. Ferrans. 1998. ‘Immunohistochemical and ultrastructural studies of basal cells, Clara cells and bronchiolar cuboidal cells in normal human airways’, Pathol Int, 48: 944–53.

    CAS  PubMed  Google Scholar 

  165. Nava, V. E., R. Khosla, S. Shin, F. E. Mordini, and B. C. Bandyopadhyay. 2022. ‘Enhanced carbonic anhydrase expression with calcification and fibrosis in bronchial cartilage during COPD’, Acta Histochem, 124: 151834.

    CAS  PubMed  Google Scholar 

  166. Nawroth, J. C., C. Lucchesi, D. Cheng, A. Shukla, J. Ngyuen, T. Shroff, A. Varone, K. Karalis, H. H. Lee, S. Alves, G. A. Hamilton, M. Salmon, and R. Villenave. 2020. ‘A Microengineered Airway Lung Chip Models Key Features of Viral-induced Exacerbation of Asthma’, Am J Respir Cell Mol Biol, 63: 591–600.

    CAS  PubMed  Google Scholar 

  167. Nawroth, Janna C., Doris Roth, Annemarie van Schadewijk, Abilash Ravi, Tengku Ibrahim Maulana, Christiana N. Senger, Sander van Riet, Dennis K. Ninaber, Amy M. de Waal, Dorothea Kraft, Pieter S. Hiemstra, Amy L Ryan, and Anne M. van der Does. 2022. ‘Breathing on Chip: Dynamic flow and stretch tune cellular composition and accelerate mucociliary maturation of airway epithelium in vitro’, bioRxiv: 2021.05.07.443164.

    Google Scholar 

  168. Nikolic, M. Z., O. Caritg, Q. Jeng, J. A. Johnson, D. Sun, K. J. Howell, J. L. Brady, U. Laresgoiti, G. Allen, R. Butler, M. Zilbauer, A. Giangreco, and E. L. Rawlins. 2017. ‘Human embryonic lung epithelial tips are multipotent progenitors that can be expanded in vitro as long-term self-renewing organoids’, Elife, 6.

    Google Scholar 

  169. Nyeng, P., G. A. Norgaard, S. Kobberup, and J. Jensen. 2008. ‘FGF10 maintains distal lung bud epithelium and excessive signaling leads to progenitor state arrest, distalization, and goblet cell metaplasia’, BMC Dev Biol, 8: 2.

    PubMed  PubMed Central  Google Scholar 

  170. O’Dwyer, D. N., S. J. Gurczynski, and B. B. Moore. 2018. ‘Pulmonary immunity and extracellular matrix interactions’, Matrix Biol, 73: 122–34.

    PubMed  PubMed Central  Google Scholar 

  171. Ong, H. X., C. L. Jackson, J. L. Cole, P. M. Lackie, D. Traini, P. M. Young, J. Lucas, and J. Conway. 2016. ‘Primary Air-Liquid Interface Culture of Nasal Epithelium for Nasal Drug Delivery’, Mol Pharm, 13: 2242–52.

    CAS  PubMed  Google Scholar 

  172. Ortiz-Zapater, Elena, Dustin C. Bagley, Virginia Llopis Hernandez, Luke B. Roberts, Thomas J. A. Maguire, Felizia Voss, Philipp Mertins, Marieluise Kirchner, Isabel Peset-Martin, Grzegorz Woszczek, Jody Rosenblatt, Michael Gotthardt, George Santis, and Maddy Parsons. 2022. ‘Epithelial coxsackievirus adenovirus receptor promotes house dust mite-induced lung inflammation’, Nature Communications, 13: 6407.

    CAS  PubMed  PubMed Central  Google Scholar 

  173. Osan, J. K., S. N. Talukdar, F. Feldmann, B. Ann DeMontigny, K. Jerome, K. L. Bailey, H. Feldmann, and M. Mehedi. 2020. ‘Goblet Cell Hyperplasia Increases SARS-CoV-2 Infection in COPD’, bioRxiv.

    Google Scholar 

  174. Osei, E. T., S. Booth, and T. L. Hackett. 2020. ‘What Have In Vitro Co-Culture Models Taught Us about the Contribution of Epithelial-Mesenchymal Interactions to Airway Inflammation and Remodeling in Asthma?’, Cells, 9: 1694.

    CAS  PubMed  PubMed Central  Google Scholar 

  175. Osei, E. T., and T. L. Hackett. 2020. ‘Epithelial-mesenchymal crosstalk in COPD: An update from in vitro model studies’, Int J Biochem Cell Biol, 125: 105775.

    CAS  PubMed  Google Scholar 

  176. Ouadah, Y., E. R. Rojas, D. P. Riordan, S. Capostagno, C. S. Kuo, and M. A. Krasnow. 2019. ‘Rare Pulmonary Neuroendocrine Cells Are Stem Cells Regulated by Rb, p53, and Notch’, Cell, 179: 403–16.e23.

    CAS  PubMed  PubMed Central  Google Scholar 

  177. Parekh, K. R., J. Nawroth, A. Pai, S. M. Busch, C. N. Senger, and A. L. Ryan. 2020. ‘Stem cells and lung regeneration’, Am J Physiol Cell Physiol, 319: C675–C93.

    CAS  PubMed  PubMed Central  Google Scholar 

  178. Pat, Yagiz, Beate Rückert, Ismail Ogulur, Duygu Yazici, Mario Pérez-Diego, Ozan C. Küçükkase, Manru Li, and Cezmi A. Akdis. 2022. ‘Differentiation of bronchial epithelial spheroids in the presence of IL-13 recapitulates characteristic features of asthmatic airway epithelia’, Allergy, 77: 2229–33.

    CAS  PubMed  Google Scholar 

  179. Peake, J. L., S. D. Reynolds, B. R. Stripp, K. E. Stephens, and K. E. Pinkerton. 2000. ‘Alteration of pulmonary neuroendocrine cells during epithelial repair of naphthalene-induced airway injury’, Am J Pathol, 156: 279–86.

    CAS  PubMed  PubMed Central  Google Scholar 

  180. Peng, L., L. Gao, X. Wu, Y. Fan, M. Liu, J. Chen, J. Song, J. Kong, Y. Dong, B. Li, A. Liu, and F. Bao. 2022. ‘Lung Organoids as Model to Study SARS-CoV-2 Infection’, Cells, 11.

    Google Scholar 

  181. Pilette, C., V. Godding, R. Kiss, M. Delos, E. Verbeken, C. Decaestecker, K. De Paepe, J. P. Vaerman, M. Decramer, and Y. Sibille. 2001. ‘Reduced epithelial expression of secretory component in small airways correlates with airflow obstruction in chronic obstructive pulmonary disease’, Am J Respir Crit Care Med, 163: 185–94.

    CAS  PubMed  Google Scholar 

  182. Plasschaert, L. W., R. Zilionis, R. Choo-Wing, V. Savova, J. Knehr, G. Roma, A. M. Klein, and A. B. Jaffe. 2018. ‘A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte’, Nature, 560: 377–81.

    CAS  PubMed  PubMed Central  Google Scholar 

  183. Plebani, R., R. Potla, M. Soong, H. Bai, Z. Izadifar, A. Jiang, R. N. Travis, C. Belgur, A. Dinis, M. J. Cartwright, R. Prantil-Baun, P. Jolly, S. E. Gilpin, M. Romano, and D. E. Ingber. 2022. ‘Modeling pulmonary cystic fibrosis in a human lung airway-on-a-chip’, J Cyst Fibros, 21: 606–15.

    CAS  PubMed  Google Scholar 

  184. Polosukhin, V. V., J. M. Cates, W. E. Lawson, R. Zaynagetdinov, A. P. Milstone, P. P. Massion, S. Ocak, L. B. Ware, J. W. Lee, R. P. Bowler, A. V. Kononov, S. H. Randell, and T. S. Blackwell. 2011a. ‘Bronchial secretory immunoglobulin a deficiency correlates with airway inflammation and progression of chronic obstructive pulmonary disease’, Am J Respir Crit Care Med, 184: 317–27.

    CAS  PubMed  PubMed Central  Google Scholar 

  185. Polosukhin, Vasiliy V, Justin M Cates, William E Lawson, Aaron P Milstone, Anton G Matafonov, Pierre P Massion, Jae Woo Lee, Scott H Randell, and Timothy S Blackwell. 2011b. ‘Hypoxia-inducible factor-1 signalling promotes goblet cell hyperplasia in airway epithelium’, The Journal of Pathology, 224: 203–11.

    CAS  PubMed  Google Scholar 

  186. Porotto, M., M. Ferren, Y.-W. Chen, Y. Siu, N. Makhsous, B. Rima, T. Briese, A. L. Greninger, H.-W. Snoeck, and A. Moscona. 2019. ‘Authentic Modeling of Human Respiratory Virus Infection in Human Pluripotent Stem Cell-Derived Lung Organoids’, mBio, 10: e00723–19.

    Google Scholar 

  187. Prakash, Y. S. 2016. ‘Emerging concepts in smooth muscle contributions to airway structure and function: implications for health and disease’, Am J Physiol Lung Cell Mol Physiol, 311: L1113–L40.

    CAS  PubMed  PubMed Central  Google Scholar 

  188. Ptasinski, V. A., J. Stegmayr, M. G. Belvisi, D. E. Wagner, and L. A. Murray. 2021. ‘Targeting Alveolar Repair in Idiopathic Pulmonary Fibrosis’, Am J Respir Cell Mol Biol, 65: 347–65.

    CAS  PubMed  PubMed Central  Google Scholar 

  189. Puchelle, E., and B. Peault. 2000. ‘Human airway xenograft models of epithelial cell regeneration’, Respir Res, 1: 125–8.

    CAS  PubMed  PubMed Central  Google Scholar 

  190. Puttur, F., L. G. Gregory, and C. M. Lloyd. 2019. ‘Airway macrophages as the guardians of tissue repair in the lung’, Immunol Cell Biol, 97: 246–57.

    CAS  PubMed  Google Scholar 

  191. Rackley, C. R., and B. R. Stripp. 2012. ‘Building and maintaining the epithelium of the lung’, J Clin Invest, 122: 2724–30.

    CAS  PubMed  PubMed Central  Google Scholar 

  192. Randell, S. H., M. L. Fulcher, W. O’Neal, and J. C. Olsen. 2011. ‘Primary epithelial cell models for cystic fibrosis research’, Methods Mol Biol, 742: 285–310.

    CAS  PubMed  Google Scholar 

  193. Raslan, A. A., and J. K. Yoon. 2020. ‘WNT Signaling in Lung Repair and Regeneration’, Mol Cells, 43: 774–83.

    CAS  PubMed  PubMed Central  Google Scholar 

  194. Ravindra, N. G., M. M. Alfajaro, V. Gasque, N. C. Huston, H. Wan, K. Szigeti-Buck, Y. Yasumoto, A. M. Greaney, V. Habet, R. D. Chow, J. S. Chen, J. Wei, R. B. Filler, B. Wang, G. Wang, L. E. Niklason, R. R. Montgomery, S. C. Eisenbarth, S. Chen, A. Williams, A. Iwasaki, T. L. Horvath, E. F. Foxman, R. W. Pierce, A. M. Pyle, D. van Dijk, and C. B. Wilen. 2021. ‘Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes’, PLoS Biol, 19: e3001143.

    CAS  PubMed  PubMed Central  Google Scholar 

  195. Rawlins, E. L., T. Okubo, Y. Xue, D. M. Brass, R. L. Auten, H. Hasegawa, F. Wang, and B. L. Hogan. 2009. ‘The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium’, Cell Stem Cell, 4: 525–34.

    CAS  PubMed  PubMed Central  Google Scholar 

  196. Reynolds, S. D., K. U. Hong, A. Giangreco, G. W. Mango, C. Guron, Y. Morimoto, and B. R. Stripp. 2000. ‘Conditional clara cell ablation reveals a self-renewing progenitor function of pulmonary neuroendocrine cells’, Am J Physiol Lung Cell Mol Physiol, 278: L1256–63.

    Google Scholar 

  197. Reynolds, S. D., P. R. Reynolds, J. C. Snyder, F. Whyte, K. J. Paavola, and B. R. Stripp. 2007. ‘CCSP regulates cross talk between secretory cells and both ciliated cells and macrophages of the conducting airway’, Am J Physiol Lung Cell Mol Physiol, 293: L114–23.

    Google Scholar 

  198. Reynolds, S. D., C. Rios, A. Wesolowska-Andersen, Y. Zhuang, M. Pinter, C. Happoldt, C. L. Hill, S. W. Lallier, G. P. Cosgrove, G. M. Solomon, D. P. Nichols, and M. A. Seibold. 2016. ‘Airway Progenitor Clone Formation Is Enhanced by Y-27632-Dependent Changes in the Transcriptome’, Am J Respir Cell Mol Biol, 55: 323–36.

    CAS  PubMed  PubMed Central  Google Scholar 

  199. Riccetti, M., J. J. Gokey, B. Aronow, and A. T. Perl. 2020. ‘The elephant in the lung: Integrating lineage-tracing, molecular markers, and single cell sequencing data to identify distinct fibroblast populations during lung development and regeneration’, Matrix Biol, 91–92: 51–74.

    PubMed  PubMed Central  Google Scholar 

  200. Rock, J. R., X. Gao, Y. Xue, S. H. Randell, Y. Y. Kong, and B. L. Hogan. 2011. ‘Notch-dependent differentiation of adult airway basal stem cells’, Cell Stem Cell, 8: 639–48.

    CAS  PubMed  PubMed Central  Google Scholar 

  201. Rock, J. R., M. W. Onaitis, E. L. Rawlins, Y. Lu, C. P. Clark, Y. Xue, S. H. Randell, and B. L. Hogan. 2009. ‘Basal cells as stem cells of the mouse trachea and human airway epithelium’, Proc Natl Acad Sci U S A, 106: 12771–5.

    CAS  PubMed  PubMed Central  Google Scholar 

  202. Rock, J. R., S. H. Randell, and B. L. Hogan. 2010. ‘Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling’, Dis Model Mech, 3: 545–56.

    CAS  PubMed  PubMed Central  Google Scholar 

  203. Rogers, Duncan F. 2003. ‘The airway goblet cell’, The International Journal of Biochemistry & Cell Biology, 35: 1–6.

    CAS  Google Scholar 

  204. Ruysseveldt, E., K. Martens, and B. Steelant. 2021. ‘Airway Basal Cells, Protectors of Epithelial Walls in Health and Respiratory Diseases’, Front Allergy, 2: 787128.

    PubMed  PubMed Central  Google Scholar 

  205. Sachs, N., A. Papaspyropoulos, D. D. Zomer-van Ommen, I. Heo, L. Böttinger, D. Klay, F. Weeber, G. Huelsz-Prince, N. Iakobachvili, G. D. Amatngalim, J. de Ligt, A. van Hoeck, N. Proost, M. C. Viveen, A. Lyubimova, L. Teeven, S. Derakhshan, J. Korving, H. Begthel, J. F. Dekkers, K. Kumawat, E. Ramos, M. F. van Oosterhout, G. J. Offerhaus, D. J. Wiener, E. P. Olimpio, K. K. Dijkstra, E. F. Smit, M. van der Linden, S. Jaksani, M. van de Ven, J. Jonkers, A. C. Rios, E. E. Voest, C. H. van Moorsel, C. K. van der Ent, E. Cuppen, A. van Oudenaarden, F. E. Coenjaerts, L. Meyaard, L. J. Bont, P. J. Peters, S. J. Tans, J. S. van Zon, S. F. Boj, R. G. Vries, J. M. Beekman, and H. Clevers. 2019. ‘Long-term expanding human airway organoids for disease modeling’, EMBO J, 38.

    Google Scholar 

  206. Saetta, M., G. Turato, S. Baraldo, A. Zanin, F. Braccioni, C. E. Mapp, P. Maestrelli, G. Cavallesco, A. Papi, and L. M. Fabbri. 2000. ‘Goblet Cell Hyperplasia and Epithelial Inflammation in Peripheral Airways of Smokers with Both Symptoms of Chronic Bronchitis and Chronic Airflow Limitation’, American Journal of Respiratory and Critical Care Medicine, 161: 1016–21.

    Google Scholar 

  207. Saint-Criq, V., L. Delpiano, J. Casement, J. C. Onuora, J. Lin, and M. A. Gray. 2020. ‘Choice of Differentiation Media Significantly Impacts Cell Lineage and Response to CFTR Modulators in Fully Differentiated Primary Cultures of Cystic Fibrosis Human Airway Epithelial Cells’, Cells, 9.

    Google Scholar 

  208. Saygili, E., U. Devamoglu, B. Goker-Bagca, O. Goksel, C. Biray-Avci, T. Goksel, and O. Yesil-Celiktas. 2022. ‘A drug-responsive multicellular human spheroid model to recapitulate drug-induced pulmonary fibrosis’, Biomed Mater, 17.

    Google Scholar 

  209. Schleh, C., B. M. Rothen-Rutishauser, F. Blank, H. D. Lauenstein, M. Nassimi, N. Krug, A. Braun, V. J. Erpenbeck, P. Gehr, and J. M. Hohlfeld. 2012. ‘Surfactant Protein D modulates allergen particle uptake and inflammatory response in a human epithelial airway model’, Respir Res, 13: 8.

    CAS  PubMed  PubMed Central  Google Scholar 

  210. Schwab, U. E., M. L. Fulcher, S. H. Randell, M. J. Flaminio, and D. G. Russell. 2010. ‘Equine bronchial epithelial cells differentiate into ciliated and mucus producing cells in vitro’, In Vitro Cell Dev Biol Anim, 46: 102–6.

    PubMed  Google Scholar 

  211. Scudieri, P., I. Musante, A. Venturini, D. Guidone, M. Genovese, F. Cresta, E. Caci, A. Palleschi, M. Poeta, F. Santamaria, F. Ciciriello, V. Lucidi, and L. J. V. Galietta. 2020. ‘Ionocytes and CFTR Chloride Channel Expression in Normal and Cystic Fibrosis Nasal and Bronchial Epithelial Cells’, Cells, 9.

    Google Scholar 

  212. Sears, P. R., C. W. Davis, M. Chua, and J. K. Sheehan. 2011. ‘Mucociliary interactions and mucus dynamics in ciliated human bronchial epithelial cell cultures’, Am J Physiol Lung Cell Mol Physiol, 301: L181–6.

    Google Scholar 

  213. Shi, Xiaowei, Jingqi Liu, Deying Chen, Minglei Zhu, Jiong Yu, Haiyang Xie, Lin Zhou, Liang Li, and Shusen Zheng. 2019. ‘MSC-triggered metabolomic alterations in liver-resident immune cells isolated from CCl4-induced mouse ALI model’, Experimental Cell Research, 383: 111511.

    CAS  PubMed  Google Scholar 

  214. Shijubo, N., Y. Itoh, T. Yamaguchi, A. Imada, M. Hirasawa, T. Yamada, T. Kawai, and S. Abe. 1999. ‘Clara cell protein-positive epithelial cells are reduced in small airways of asthmatics’, Am J Respir Crit Care Med, 160: 930–3.

    CAS  PubMed  Google Scholar 

  215. Shimizu, T., P. Nettesheim, F. C. Ramaekers, and S. H. Randell. 1992. ‘Expression of "cell-type-specific" markers during rat tracheal epithelial regeneration’, Am J Respir Cell Mol Biol, 7: 30–41.

    CAS  PubMed  Google Scholar 

  216. Shimizu, T., Y. Takahashi, S. Kawaguchi, and Y. Sakakura. 1996. ‘Hypertrophic and metaplastic changes of goblet cells in rat nasal epithelium induced by endotoxin’, Am J Respir Crit Care Med, 153: 1412–8.

    CAS  PubMed  Google Scholar 

  217. Si, L., H. Bai, C. Y. Oh, L. Jin, R. Prantil-Baun, and D. E. Ingber. 2021. ‘Clinically Relevant Influenza Virus Evolution Reconstituted in a Human Lung Airway-on-a-Chip’, Microbiol Spectr, 9: e0025721.

    PubMed  Google Scholar 

  218. Sicard, D., A. J. Haak, K. M. Choi, A. R. Craig, L. E. Fredenburgh, and D. J. Tschumperlin. 2018. ‘Aging and anatomical variations in lung tissue stiffness’, Am J Physiol Lung Cell Mol Physiol, 314: L946–L55.

    CAS  PubMed  PubMed Central  Google Scholar 

  219. Sin, D. D., C. M. Tammemagi, S. Lam, M. J. Barnett, X. Duan, A. Tam, H. Auman, Z. Feng, G. E. Goodman, S. Hanash, and A. Taguchi. 2013. ‘Pro-surfactant protein B as a biomarker for lung cancer prediction’, J Clin Oncol, 31: 4536–43.

    PubMed  PubMed Central  Google Scholar 

  220. Spitalieri, P., F. Centofanti, M. Murdocca, M. G. Scioli, A. Latini, S. Di Cesare, G. Citro, A. Rossi, A. Orlandi, S. Miersch, S. S. Sidhu, P. P. Pandolfi, A. Botta, F. Sangiuolo, and G. Novelli. 2022. ‘Two Different Therapeutic Approaches for SARS-CoV-2 in hiPSCs-Derived Lung Organoids’, Cells, 11.

    Google Scholar 

  221. Sprott, R. F., F. Ritzmann, F. Langer, Y. Yao, C. Herr, Y. Kohl, T. Tschernig, R. Bals, and C. Beisswenger. 2020. ‘Flagellin shifts 3D bronchospheres towards mucus hyperproduction’, Respir Res, 21: 222.

    CAS  PubMed  PubMed Central  Google Scholar 

  222. Stupnikov, M. R., Y. Yang, M. Mori, J. Lu, and W. V. Cardoso. 2019. ‘Jagged and Delta-like ligands control distinct events during airway progenitor cell differentiation’, Elife, 8.

    Google Scholar 

  223. Succony, L., S. Gomez-Lopez, A. Pennycuick, A. S. N. Alhendi, D. Davies, S. E. Clarke, K. H. C. Gowers, N. A. Wright, K. B. Jensen, and S. M. Janes. 2022. ‘Lrig1 expression identifies airway basal cells with high proliferative capacity and restricts lung squamous cell carcinoma growth’, Eur Respir J, 59.

    Google Scholar 

  224. Sui, P., D. L. Wiesner, J. Xu, Y. Zhang, J. Lee, S. Van Dyken, A. Lashua, C. Yu, B. S. Klein, R. M. Locksley, G. Deutsch, and X. Sun. 2018. ‘Pulmonary neuroendocrine cells amplify allergic asthma responses’, Science, 360.

    Google Scholar 

  225. Suprynowicz, F. A., G. Upadhyay, E. Krawczyk, S. C. Kramer, J. D. Hebert, X. Liu, H. Yuan, C. Cheluvaraju, P. W. Clapp, R. C. Boucher, Jr., C. M. Kamonjoh, S. H. Randell, and R. Schlegel. 2012. ‘Conditionally reprogrammed cells represent a stem-like state of adult epithelial cells’, Proc Natl Acad Sci U S A, 109: 20035–40.

    CAS  PubMed  PubMed Central  Google Scholar 

  226. Sutanto, E. N., A. Scaffidi, L. W. Garratt, K. Looi, C. J. Foo, M. A. Tessari, R. A. Janssen, D. F. Fischer, S. M. Stick, A. Kicic, and C. F. Arest. 2018. ‘Assessment of p.Phe508del-CFTR functional restoration in pediatric primary cystic fibrosis airway epithelial cells’, PLoS One, 13: e0191618.

    PubMed  PubMed Central  Google Scholar 

  227. Suzuki, S., F. J. Hawkins, C. Barilla, M. L. Beermann, D. N. Kotton, and B. R. Davis. 2021. ‘Differentiation of human pluripotent stem cells into functional airway basal stem cells’, STAR Protoc, 2: 100683.

    PubMed  PubMed Central  Google Scholar 

  228. Swatek, A. M., T. J. Lynch, A. K. Crooke, P. J. Anderson, S. R. Tyler, L. Brooks, M. Ivanovic, J. A. Klesney-Tait, M. Eberlein, T. Pena, D. K. Meyerholz, J. F. Engelhardt, and K. R. Parekh. 2018. ‘Depletion of Airway Submucosal Glands and TP63(+)KRT5(+) Basal Cells in Obliterative Bronchiolitis’, Am J Respir Crit Care Med, 197: 1045–57.

    CAS  PubMed  PubMed Central  Google Scholar 

  229. Tadokoro, T., Y. Wang, L. S. Barak, Y. Bai, S. H. Randell, and B. L. Hogan. 2014. ‘IL-6/STAT3 promotes regeneration of airway ciliated cells from basal stem cells’, Proc Natl Acad Sci U S A, 111: E3641–9.

    Google Scholar 

  230. Tata, A., Y. Kobayashi, R. D. Chow, J. Tran, A. Desai, A. J. Massri, T. J. McCord, M. D. Gunn, and P. R. Tata. 2018. ‘Myoepithelial Cells of Submucosal Glands Can Function as Reserve Stem Cells to Regenerate Airways after Injury’, Cell Stem Cell, 22: 668–83.e6.

    CAS  PubMed  PubMed Central  Google Scholar 

  231. Tata, P. R., H. Mou, A. Pardo-Saganta, R. Zhao, M. Prabhu, B. M. Law, V. Vinarsky, J. L. Cho, S. Breton, A. Sahay, B. D. Medoff, and J. Rajagopal. 2013. ‘Dedifferentiation of committed epithelial cells into stem cells in vivo’, Nature, 503: 218–23.

    CAS  PubMed  PubMed Central  Google Scholar 

  232. Thornton, D. J., K. Rousseau, and M. A. McGuckin. 2008. ‘Structure and function of the polymeric mucins in airways mucus’, Annu Rev Physiol, 70: 459–86.

    CAS  PubMed  Google Scholar 

  233. Upadhyay, S., and L. Palmberg. 2018. ‘Air-Liquid Interface: Relevant In Vitro Models for Investigating Air Pollutant-Induced Pulmonary Toxicity’, Toxicol Sci, 164: 21–30.

    CAS  PubMed  Google Scholar 

  234. Volckaert, T., and S. De Langhe. 2014. ‘Lung epithelial stem cells and their niches: Fgf10 takes center stage’, Fibrogenesis Tissue Repair, 7: 8.

    PubMed  PubMed Central  Google Scholar 

  235. Volckaert, T., and S. P. De Langhe. 2015. ‘Wnt and FGF mediated epithelial-mesenchymal crosstalk during lung development’, Dev Dyn, 244: 342–66.

    CAS  PubMed  Google Scholar 

  236. Volckaert, T., T. Yuan, C. M. Chao, H. Bell, A. Sitaula, L. Szimmtenings, E. El Agha, D. Chanda, S. Majka, S. Bellusci, V. J. Thannickal, R. Fassler, and S. P. De Langhe. 2017. ‘Fgf10-Hippo Epithelial-Mesenchymal Crosstalk Maintains and Recruits Lung Basal Stem Cells’, Dev Cell, 43: 48–59 e5.

    CAS  PubMed  PubMed Central  Google Scholar 

  237. Wang, H., Y. Liu, and Z. Liu. 2013. ‘Clara cell 10-kD protein in inflammatory upper airway diseases’, Curr Opin Allergy Clin Immunol, 13: 25–30.

    PubMed  Google Scholar 

  238. Wang, Ruobing, Katie B. McCauley, Darrell N. Kotton, and Finn Hawkins. 2020. ‘Chapter 5 – Differentiation of human airway-organoids from induced pluripotent stem cells (iPSCs).’ in Jason R. Spence (ed.), Methods in Cell Biology (Academic Press).

    Google Scholar 

  239. Wang, X., Y. Zhang, A. Amberson, and J. F. Engelhardt. 2001. ‘New models of the tracheal airway define the glandular contribution to airway surface fluid and electrolyte composition’, Am J Respir Cell Mol Biol, 24: 195–202.

    CAS  PubMed  Google Scholar 

  240. Watson, J. K., S. Rulands, A. C. Wilkinson, A. Wuidart, M. Ousset, A. Van Keymeulen, B. Gottgens, C. Blanpain, B. D. Simons, and E. L. Rawlins. 2015. ‘Clonal Dynamics Reveal Two Distinct Populations of Basal Cells in Slow-Turnover Airway Epithelium’, Cell Rep, 12: 90–101.

    CAS  PubMed  PubMed Central  Google Scholar 

  241. White, E. S. 2015. ‘Lung extracellular matrix and fibroblast function’, Ann Am Thorac Soc, 12 Suppl 1: S30–3.

    Google Scholar 

  242. Whitsett, J. A. 2018. ‘Airway Epithelial Differentiation and Mucociliary Clearance’, Ann Am Thorac Soc, 15: S143–S148.

    PubMed  PubMed Central  Google Scholar 

  243. Wicher, S. A., B. B. Roos, J. J. Teske, Y. H. Fang, C. Pabelick, and Y. S. Prakash. 2021. ‘Aging increases senescence, calcium signaling, and extracellular matrix deposition in human airway smooth muscle’, PLoS One, 16: e0254710.

    CAS  PubMed  PubMed Central  Google Scholar 

  244. Wijk, S. C., P. Prabhala, B. Michalikova, M. Sommarin, A. Doyle, S. Lang, K. Kanzenbach, E. Tufvesson, S. Lindstedt, N. D. Leigh, G. Karlsson, L. Bjermer, G. Westergren-Thorsson, and M. Magnusson. 2021. ‘Human Primary Airway Basal Cells Display a Continuum of Molecular Phases from Health to Disease in Chronic Obstructive Pulmonary Disease’, Am J Respir Cell Mol Biol, 65: 103–13.

    CAS  PubMed  Google Scholar 

  245. Wirtz, H. R., and L. G. Dobbs. 2000. ‘The effects of mechanical forces on lung functions’, Respir Physiol, 119: 1–17.

    CAS  PubMed  Google Scholar 

  246. Wohnhaas, C. T., J. A. Gindele, T. Kiechle, Y. Shen, G. G. Leparc, B. Stierstorfer, H. Stahl, F. Gantner, C. Viollet, J. Schymeinsky, and P. Baum. 2021. ‘Cigarette Smoke Specifically Affects Small Airway Epithelial Cell Populations and Triggers the Expansion of Inflammatory and Squamous Differentiation Associated Basal Cells’, Int J Mol Sci, 22.

    Google Scholar 

  247. Wong, A. P., A. Keating, and T. K. Waddell. 2009. ‘Airway regeneration: the role of the Clara cell secretory protein and the cells that express it’, Cytotherapy, 11: 676–87.

    CAS  PubMed  Google Scholar 

  248. Xie, W., J. T. Fisher, T. J. Lynch, M. Luo, T. I. Evans, T. L. Neff, W. Zhou, Y. Zhang, Y. Ou, N. W. Bunnett, A. F. Russo, M. J. Goodheart, K. R. Parekh, X. Liu, and J. F. Engelhardt. 2011. ‘CGRP induction in cystic fibrosis airways alters the submucosal gland progenitor cell niche in mice’, J Clin Invest, 121: 3144–58.

    CAS  PubMed  PubMed Central  Google Scholar 

  249. Yang, I. V., and D. A. Schwartz. 2011. ‘Epigenetic control of gene expression in the lung’, Am J Respir Crit Care Med, 183: 1295–301.

    CAS  PubMed  PubMed Central  Google Scholar 

  250. Yang, J., B. Wang, H. X. Zhou, B. M. Liang, H. Chen, C. L. Ma, J. Xiao, J. Deng, L. Yan, Y. P. Chen, C. L. Chen, F. Chen, X. M. Ou, and Y. L. Feng. 2014. ‘Association of surfactant protein B gene with chronic obstructive pulmonary disease susceptibility’, Int J Tuberc Lung Dis, 18: 1378–84.

    CAS  PubMed  Google Scholar 

  251. Yang, Q., A. R. Soltis, G. Sukumar, X. Zhang, H. Caohuy, J. Freedy, C. L. Dalgard, M. D. Wilkerson, H. B. Pollard, and B. S. Pollard. 2019. ‘Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients’, Respir Res, 20: 290.

    CAS  PubMed  PubMed Central  Google Scholar 

  252. Yang, Y., P. Riccio, M. Schotsaert, M. Mori, J. Lu, D. K. Lee, A. Garcia-Sastre, J. Xu, and W. V. Cardoso. 2018. ‘Spatial-Temporal Lineage Restrictions of Embryonic p63(+) Progenitors Establish Distinct Stem Cell Pools in Adult Airways’, Dev Cell, 44: 752–61 e4.

    Google Scholar 

  253. Yeung, T., P. C. Georges, L. A. Flanagan, B. Marg, M. Ortiz, M. Funaki, N. Zahir, W. Ming, V. Weaver, and P. A. Janmey. 2005. ‘Effects of substrate stiffness on cell morphology, cytoskeletal structure, and adhesion’, Cell Motil Cytoskeleton, 60: 24–34.

    PubMed  Google Scholar 

  254. Young, B. M., K. Shankar, C. K. Tho, A. R. Pellegrino, and R. L. Heise. 2019. ‘Laminin-driven Epac/Rap1 regulation of epithelial barriers on decellularized matrix’, Acta Biomater, 100: 223–34.

    CAS  PubMed  PubMed Central  Google Scholar 

  255. Yu, Y., X. Liu, Z. Zhao, Z. Xu, Y. Qiao, Y. Zhou, H. Qiao, J. Zhong, J. Dai, and G. Suo. 2021. ‘The Extracellular Matrix Enriched With Exosomes for the Treatment on Pulmonary Fibrosis in Mice’, Front Pharmacol, 12: 747223.

    CAS  PubMed  PubMed Central  Google Scholar 

  256. Yuan, T., T. Volckaert, D. Chanda, V. J. Thannickal, and S. P. De Langhe. 2018. ‘Fgf10 Signaling in Lung Development, Homeostasis, Disease, and Repair After Injury’, Front Genet, 9: 418.

    CAS  PubMed  PubMed Central  Google Scholar 

  257. Zacharias, W. J., D. B. Frank, J. A. Zepp, M. P. Morley, F. A. Alkhaleel, J. Kong, S. Zhou, E. Cantu, and E. E. Morrisey. 2018. ‘Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor’, Nature, 555: 251–55.

    CAS  PubMed  PubMed Central  Google Scholar 

  258. Zamprogno, P., G. Thoma, V. Cencen, D. Ferrari, B. Putz, J. Michler, G. E. Fantner, and O. T. Guenat. 2021. ‘Mechanical Properties of Soft Biological Membranes for Organ-on-a-Chip Assessed by Bulge Test and AFM’, ACS Biomater Sci Eng, 7: 2990–97.

    CAS  PubMed  Google Scholar 

  259. Zaragosi, L. E., M. Deprez, and P. Barbry. 2020. ‘Using single-cell RNA sequencing to unravel cell lineage relationships in the respiratory tract’, Biochem Soc Trans, 48: 327–36.

    CAS  PubMed  Google Scholar 

  260. Zepeda, M. L., M. R. Chinoy, and J. M. Wilson. 1995. ‘Characterization of stem cells in human airway capable of reconstituting a fully differentiated bronchial epithelium’, Somat Cell Mol Genet, 21: 61–73.

    CAS  PubMed  Google Scholar 

  261. Zepp, J. A., and E. E. Morrisey. 2019. ‘Cellular crosstalk in the development and regeneration of the respiratory system’, Nat Rev Mol Cell Biol, 20: 551–66.

    CAS  PubMed  PubMed Central  Google Scholar 

  262. Zhou, Y., J. Ming, M. Deng, Y. Li, B. Li, J. Li, Y. Ma, Z. Chen, and S. Liu. 2020. ‘Berberine-mediated up-regulation of surfactant protein D facilitates cartilage repair by modulating immune responses via the inhibition of TLR4/NF-kB signaling’, Pharmacol Res, 155: 104690.

    CAS  PubMed  Google Scholar 

  263. Zhou, Y., Y. Yang, L. Guo, J. Qian, J. Ge, D. Sinner, H. Ding, A. Califano, and W. V. Cardoso. 2022. ‘Airway basal cells show regionally distinct potential to undergo metaplastic differentiation’, Elife, 11.

    Google Scholar 

  264. Zuo, Wu-Lin, Sushila A. Shenoy, Sheng Li, Sarah L. O’Beirne, Yael Strulovici-Barel, Philip L. Leopold, Guoqing Wang, Michelle R. Staudt, Matthew S. Walters, Christopher Mason, Robert J. Kaner, Jason G. Mezey, and Ronald G. Crystal. 2018. ‘Ontogeny and Biology of Human Small Airway Epithelial Club Cells’, American Journal of Respiratory and Critical Care Medicine, 198: 1375–88.

    CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgments

ALR is funded by the NIH: NHLBI (R01HL139328 and R01HL153622-A1), the Cystic Fibrosis Foundation (CFFT17XX0 and CFFT21XX0), and the Daniel Tyler Health and Education Trust.

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The authors have declared that no conflict-of-interest exists.

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Gautam, L.K., Harriott, N.C., Caceres, A.M., Ryan, A.L. (2023). Basic Science Perspective on Engineering and Modeling the Large Airways. In: Magin, C.M. (eds) Engineering Translational Models of Lung Homeostasis and Disease. Advances in Experimental Medicine and Biology, vol 1413. Springer, Cham. https://doi.org/10.1007/978-3-031-26625-6_5

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