Abstract
Dynamic functional connectivity networks (dFCN) based on rs-fMRI have demonstrated tremendous potential for brain function analysis and brain disease classification. Recently, studies have applied deep learning techniques (e.g., convolutional neural network, CNN) to dFCN classification, and achieved better performance than the traditional machine learning methods. However, previous deep learning methods usually perform successive convolutional operations on the input dFCN to obtain high-order brain network aggregation features, extracting them from each sliding window using a series split, which may neglect non-linear relations between different regions and the sequentiality of information. Important high-order sequence information of dFCN, which could further improve the classification performance, is ignored in these studies. To address these issues, we propose a self-attention-based convolutional recurrent network (SA-CRN) learning framework for brain disease classification with rs-fMRI data. The experimental results on a public dataset (i.e., ADNI) demonstrate the effectiveness of our proposed SA-CRN method.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Duc, N.T., Ryu, S., Qureshi, M.N.I., Choi, M., Lee, K.H., Lee, B.: 3D-deep learning based automatic diagnosis of Alzheimer’s disease with joint MMSE prediction using resting-state FMRI. Neuroinformatics 18(1), 71–86 (2020)
Huang, F., et al.: Self-weighted adaptive structure learning for ASD diagnosis via multi-template multi-center representation. Med. Image Anal. 63, 101662 (2020)
Yang, P., et al.: Fused sparse network learning for longitudinal analysis of mild cognitive impairment. IEEE Trans. Cybern. 51(1), 233–246 (2019)
Jie, B., Liu, M., Lian, C., Shi, F., Shen, D.: Designing weighted correlation kernels in convolutional neural networks for functional connectivity based brain disease diagnosis. Med. Image Anal. 63, 101709 (2020)
Chen, X., Zhang, H., Zhang, L., Shen, C., Lee, S.W., Shen, D.: Extraction of dynamic functional connectivity from brain grey matter and white matter for mci classification. Hum. Brain Mapp. 38(10), 5019–5034 (2017)
Zhao, F., Chen, Z., Rekik, I., Lee, S.W., Shen, D.: Diagnosis of autism spectrum disorder using central-moment features from low-and high-order dynamic resting-state functional connectivity networks. Front. Neurosci. 14, 258 (2020)
Larrazabal, A.J., Nieto, N., Peterson, V., Milone, D.H., Ferrante, E.: Gender imbalance in medical imaging datasets produces biased classifiers for computer-aided diagnosis. Proc. Natl. Acad. Sci. 117(23), 12592–12594 (2020)
Karar, M.E., Hemdan, E.E.D., Shouman, M.A.: Cascaded deep learning classifiers for computer-aided diagnosis of Covid-19 and pneumonia diseases in x-ray scans. Complex Intell. Syst. 7(1), 235–247 (2021)
Koo, C.S., Dolgunov, D., Koh, C.J.: Key tips for using computer-aided diagnosis in colonoscopy-observations from two different platforms. Endoscopy (2021)
Repici, A., et al.: Efficacy of real-time computer-aided detection of colorectal neoplasia in a randomized trial. Gastroenterology 159(2), 512–520 (2020)
de Groof, A.J., et al.: Deep learning algorithm detection of Barrett’s neoplasia with high accuracy during live endoscopic procedures: a pilot study (with video). Gastrointest. Endosc. 91(6), 1242–1250 (2020)
Jarnalo, C.M., Linsen, P., Blazís, S., van der Valk, P., Dickerscheid, D.: Clinical evaluation of a deep-learning-based computer-aided detection system for the detection of pulmonary nodules in a large teaching hospital. Clin. Radiol. 76(11), 838–845 (2021)
Misawa, M., et al.: Development of a computer-aided detection system for colonoscopy and a publicly accessible large colonoscopy video database (with video). Gastrointest. Endosc. 93(4), 960–967 (2021)
Wang, M., Lian, C., Yao, D., Zhang, D., Liu, M., Shen, D.: Spatial-temporal dependency modeling and network hub detection for functional MRI analysis via convolutional-recurrent network. IEEE Trans. Biomed. Eng. 67(8), 2241–2252 (2019)
Lin, K., Jie, B., Dong, P., Ding, X., Bian, W., Liu, M.: Extracting sequential features from dynamic connectivity network with rs-fMRI data for AD classification. In: Lian, C., Cao, X., Rekik, I., Xu, X., Yan, P. (eds.) MLMI 2021. LNCS, vol. 12966, pp. 664–673. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87589-3_68
Jie, B., Liu, M., Shen, D.: Integration of temporal and spatial properties of dynamic connectivity networks for automatic diagnosis of brain disease. Med. Image Anal. 47, 81–94 (2018)
Bronstein, M.M., Bruna, J., Cohen, T., Veličković, P.: Geometric deep learning: grids, groups, graphs, geodesics, and gauges. arXiv preprint arXiv:2104.13478 (2021)
Park, N., Kim, S.: How do vision transformers work? arXiv preprint arXiv:2202.06709 (2022)
Lin, Z., et al.: A structured self-attentive sentence embedding. arXiv preprint arXiv:1703.03130 (2017)
Wang, F., Liu, H.: Understanding the behaviour of contrastive loss. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2495–2504 (2021)
Lei, B., et al.: Diagnosis of early Alzheimer’s disease based on dynamic high order networks. Brain Imaging Behav. 15(1), 276–287 (2021)
Acknowledgement
Z. Zhang, B. Jie, Z. Wang, J. Zhou and Y. Yang were supported in part by NSFC (Nos. 61976006, 61573023, 61902003), Anhui-NSFC (Nos. 1708085MF145, 1808085MF171) and AHNU-FOYHE (No. gxyqZD2017010).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2022 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Zhang, Z., Jie, B., Wang, Z., Zhou, J., Yang, Y. (2022). Self-attention Based High Order Sequence Features of Dynamic Functional Connectivity Networks with rs-fMRI for Brain Disease Classification. In: Fang, L., Povey, D., Zhai, G., Mei, T., Wang, R. (eds) Artificial Intelligence. CICAI 2022. Lecture Notes in Computer Science(), vol 13605. Springer, Cham. https://doi.org/10.1007/978-3-031-20500-2_51
Download citation
DOI: https://doi.org/10.1007/978-3-031-20500-2_51
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-20499-9
Online ISBN: 978-3-031-20500-2
eBook Packages: Computer ScienceComputer Science (R0)