Summary
Characterization of gene expression programs and pathways important for normal and cancer stem cells has become an active area of investigation. Microarray analysis of various cell populations provides an opportunity to assess genomewide expression programs to define cellular identity and to potentially identify pathways activated in various stem cells. Here we describe methods to isolate a leukemia stem cell population, amplify RNA, and perform microarray analyses.
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References
Krivtsov AV, Twomey D, Feng Z, et al. (2006) Transformation from committed progenitor to leukaemia stem cell initiated by MLL-AF9. Nature 442(7104):818–22.
Na Nakorn T, Traver D, Weissman IL, Akashi K. (2002) Myeloerythroid-restricted progenitors are sufficient to confer radioprotection and provide the majority of day 8 CFU-S. J Clin Invest 109(12):1579–85.
Cozzio A, Passegue E, Ayton PM, Karsunky H, Cleary ML, Weissman IL. (2003) Similar MLL-associated leukemias arising from self-renewing stem cells and short-lived myeloid progenitors. Genes Dev 17(24):3029–35.
Akashi K, Traver D, Miyamoto T, Weissman IL. (2000) A clonogenic common myeloid progenitor that gives rise to all myeloid lineages. Nature 404(6774):193–7.
Coligan JE, Kruisbeek AM, Margulies DH, Shevach EM, Strobber W. (1994) Current protocols in immunology, isolation of murine macrophages. New York: Wiley
Eisen MB, Spellman PT, Brown PO, Botstein D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95(25):14863–8.
Golub TR, Slonim DK, Tamayo P, et al. 1999 Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286(5439):531–7.
Tamayo P, Scanfeld D, Ebert BL, Gillette MA, Roberts CW, Mesirov JP. Metagene projection for cross-platform, cross-species characterization of global transcriptional states. Proc Natl Acad Sci U S A 2007;104(14):5959–64.
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP. (2006) GenePattern 2.0. Nat Genet 38(5):500–1.
Sanes JR, Rubenstein JL, Nicolas JF. (1986) Use of a recombinant retrovirus to study post-implantation cell lineage in mouse embryos. EMBO J 5(12):3133–42.
Van Gelder RN, von Zastrow ME, Yool A, Dement WC, Barchas JD, Eberwine JH. (1990) Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc Natl Acad Sci U S A 87(5):1663–7.
Acknowledgments
We thank all the members of the Armstrong lab for their help in developing these protocols. Also, we would like to thank members of the Broad Institute cancer program and Todd R. Golub for help in developing these approaches and for ongoing collaborative efforts.
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© 2009 Humana Press, a part of Springer Science+Business Media, LLC
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Krivtsov, A.V., Wang, Y., Feng, Z., Armstrong, S.A. (2009). Gene Expression Profiling of Leukemia Stem Cells. In: Eric So, C.W. (eds) Leukemia. Methods in Molecular Biology™, vol 538. Humana Press. https://doi.org/10.1007/978-1-59745-418-6_11
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DOI: https://doi.org/10.1007/978-1-59745-418-6_11
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