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Cilia pp 35–51Cite as

Morphological and Functional Characterization of the Ciliary Pocket by Electron and Fluorescence Microscopy

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1454))

Abstract

In many vertebrate cell types, the proximal part of the primary cilium is positioned within an invagination of the plasma membrane known as the ciliary pocket. Recent evidence points to the conclusion that the ciliary pocket comprises a unique site for exocytosis and endocytosis of ciliary proteins, which regulates the spatiotemporal trafficking of receptors into and out of the cilium to control its sensory function. In this chapter, we provide methods based on electron microscopy, 3D reconstruction of fluorescence images as well as live cell imaging suitable for investigating processes associated with endocytosis at the ciliary pocket.

These authors contributed equally to the manuscript.

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References

  1. Satir P, Christensen ST (2007) Overview of structure and function of mammalian cilia. Annu Rev Physiol 69:377–400. doi:10.1146/annurev.physiol.69.040705.141236

    Article  CAS  Google Scholar 

  2. Pedersen LB, Schroder JM, Satir P, Christensen ST (2012) The ciliary cytoskeleton. Compr Physiol 2(1):779–803. doi:10.1002/cphy.c110043

    Google Scholar 

  3. Czarnecki PG, Shah JV (2012) The ciliary transition zone: from morphology and molecules to medicine. Trends Cell Biol 22(4):201–210. doi:10.1016/j.tcb.2012.02.001

    Article  CAS  PubMed Central  Google Scholar 

  4. Madhivanan K, Aguilar RC (2014) Ciliopathies: the trafficking connection. Traffic 15(10):1031–1056. doi:10.1111/tra.12195

    Article  CAS  PubMed Central  Google Scholar 

  5. Koefoed K, Veland IR, Pedersen LB, Larsen LA, Christensen ST (2014) Cilia and coordination of signaling networks during heart development. Organogenesis 10(1):108–125. doi:10.4161/org.27483

    Article  Google Scholar 

  6. Valente EM, Rosti RO, Gibbs E, Gleeson JG (2014) Primary cilia in neurodevelopmental disorders. Nat Rev Neurol 10(1):27–36. doi:10.1038/nrneurol.2013.247

    Article  Google Scholar 

  7. Waters AM, Beales PL (2011) Ciliopathies: an expanding disease spectrum. Pediatr Nephrol 26(7):1039–1056. doi:10.1007/s00467-010-1731-7

    Article  PubMed Central  Google Scholar 

  8. Ghossoub R, Molla-Herman A, Bastin P, Benmerah A (2011) The ciliary pocket: a once-forgotten membrane domain at the base of cilia. Biol Cell 103(3):131–144. doi:10.1042/BC20100128

    Article  Google Scholar 

  9. Benmerah A (2013) The ciliary pocket. Curr Opin Cell Biol 25(1):78–84. doi:10.1016/j.ceb.2012.10.011

    Article  CAS  Google Scholar 

  10. Mikkelsen EJ, Albert LG, Upadhyaya A (1988) Neuroleptic-withdrawal cachexia. N Engl J Med 318(14):929. doi:10.1056/NEJM198804073181416

    CAS  Google Scholar 

  11. Schou KB, Pedersen LB, Christensen ST (2015) Ins and outs of GPCR signaling in primary cilia. EMBO Rep 16(9):1099–1113

    Article  CAS  Google Scholar 

  12. Christensen ST, Clement CA, Satir P, Pedersen LB (2012) Primary cilia and coordination of receptor tyrosine kinase (RTK) signalling. J Pathol 226(2):172–184. doi:10.1002/path.3004

    Article  CAS  Google Scholar 

  13. Phua SC, Lin YC, Inoue T (2015) An intelligent nano-antenna: Primary cilium harnesses TRP channels to decode polymodal stimuli. Cell Calcium 58(4):415–422. doi:10.1016/j.ceca.2015.03.005

    Article  CAS  Google Scholar 

  14. Seeger-Nukpezah T, Golemis EA (2012) The extracellular matrix and ciliary signaling. Curr Opin Cell Biol 24(5):652–661. doi:10.1016/j.ceb.2012.06.002

    Article  CAS  PubMed Central  Google Scholar 

  15. Clement CA, Ajbro KD, Koefoed K, Vestergaard ML, Veland IR, Henriques de Jesus MP, Pedersen LB, Benmerah A, Andersen CY, Larsen LA, Christensen ST (2013) TGF-beta signaling is associated with endocytosis at the pocket region of the primary cilium. Cell Rep 3(6):1806–1814. doi:10.1016/j.celrep.2013.05.020

    Article  CAS  Google Scholar 

  16. Molla-Herman A, Ghossoub R, Blisnick T, Meunier A, Serres C, Silbermann F, Emmerson C, Romeo K, Bourdoncle P, Schmitt A, Saunier S, Spassky N, Bastin P, Benmerah A (2010) The ciliary pocket: an endocytic membrane domain at the base of primary and motile cilia. J Cell Sci 123(Pt 10):1785–1795. doi:10.1242/jcs.059519

    Article  CAS  Google Scholar 

  17. Vanneste Y, Michel A, Dimaline R, Najdovski T, Deschodt-Lanckman M (1988) Hydrolysis of alpha-human atrial natriuretic peptide in vitro by human kidney membranes and purified endopeptidase-24.11. Evidence for a novel cleavage site. Biochem J 254(2):531–537

    Article  CAS  PubMed Central  Google Scholar 

  18. Tang WB, Ling GH, Sun L, Liu FY (2010) Smad anchor for receptor activation (SARA) in TGF-beta signaling. Front Biosci (Elite Ed) 2:857–860

    Google Scholar 

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Acknowledgments

We would like to thank Pierre Bourdoncle (Cellular imaging Facility, Cochin Institute) for his precious help on deconvolution and 3D reconstruction of fluorescence images on RPE1 cells. This work was supported by the University of Copenhagen Excellence Programme for Interdisciplinary Research and the Danish Council for Independent Research (1331-00254).

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Correspondence to Søren Tvorup Christensen or Alexandre Benmerah .

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Ghossoub, R., Lindbæk, L., Molla-Herman, A., Schmitt, A., Christensen, S.T., Benmerah, A. (2016). Morphological and Functional Characterization of the Ciliary Pocket by Electron and Fluorescence Microscopy. In: Satir, P., Christensen, S. (eds) Cilia. Methods in Molecular Biology, vol 1454. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3789-9_3

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  • DOI: https://doi.org/10.1007/978-1-4939-3789-9_3

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3787-5

  • Online ISBN: 978-1-4939-3789-9

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