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Small-Molecule High-Throughput Screening Utilizing Xenopus Egg Extract

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1263))

Abstract

Screens for small-molecule modulators of biological pathways typically utilize cultured cell lines, purified proteins, or, recently, model organisms (e.g., zebrafish, Drosophila, C. elegans). Herein, we describe a method for using Xenopus laevis egg extract, a biologically active and highly tractable cell-free system that recapitulates a legion of complex chemical reactions found in intact cells. Specifically, we focus on the use of a luciferase-based fusion system to identify small-molecule modulators that affect protein turnover.

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References

  1. Hang BI et al (2012) Screening for small molecule inhibitors of embryonic pathways: sometimes you gotta crack a few eggs. Bioorg Med Chem 20:1869–1877

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  2. Thorne CA et al (2010) Small-molecule inhibition of Wnt signaling through activation of casein kinase 1alpha. Nat Chem Biol 6:829–836

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  3. Thorne CA et al (2011) A biochemical screen for identification of small-molecule regulators of the Wnt pathway using Xenopus egg extracts. J Biomol Screen 16:995–1006

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  4. Ma L et al (1998) Corequirement of specific phosphoinositides and small GTP-binding protein Cdc42 in inducing actin assembly in Xenopus egg extracts. J Cell Biol 140:1125–1136

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  5. Salic A, Lee E, Mayer L, Kirschner MW (2000) Control of beta-catenin stability: reconstitution of the cytoplasmic steps of the Wnt pathway in Xenopus egg extracts. Mol Cell 5:523–532

    Article  CAS  PubMed  Google Scholar 

  6. Murray AW (1991) Cell cycle extracts. Methods Cell Biol 36:581–605

    Article  CAS  PubMed  Google Scholar 

  7. Glotzer M, Murray AW, Kirschner MW (1991) Cyclin is degraded by the ubiquitin pathway. Nature 349:132–138

    Article  CAS  PubMed  Google Scholar 

  8. Tutter AV, Walter JC (2006) Chromosomal DNA replication in a soluble cell-free system derived from Xenopus eggs. Methods Mol Biol 322:121–137

    Article  CAS  PubMed  Google Scholar 

  9. Theriot JA et al (1994) Involvement of profilin in the actin-based motility of L. monocytogenes in cells and in cell-free extracts. Cell 76:505–517

    Article  CAS  PubMed  Google Scholar 

  10. Maresca TJ, Heald R (2006) Methods for studying spindle assembly and chromosome condensation in Xenopus egg extracts. Methods Mol Biol 322:459–474

    Article  CAS  PubMed  Google Scholar 

  11. Shennan KI (2006) Xenopus egg extracts: a model system to study proprotein convertases. Methods Mol Biol 322:199–212

    Article  CAS  PubMed  Google Scholar 

  12. Kornbluth S, Yang J, Powers M (2006) Analysis of the cell cycle using Xenopus egg extracts. Curr Protoc Cell Biol. Chapter 11:Unit 11.11

    Google Scholar 

  13. Chan RC, Forbes DI (2006) In vitro study of nuclear assembly and nuclear import using Xenopus egg extracts. Methods Mol Biol 322:289–300

    Article  CAS  PubMed  Google Scholar 

  14. Dabauvalle MC et al (1991) Spontaneous assembly of pore complex-containing membranes (“annulate lamellae”) in Xenopus egg extract in the absence of chromatin. J Cell Biol 112:1073–1082

    Article  CAS  PubMed  Google Scholar 

  15. Dabauvalle MC, Scheer U (1991) Assembly of nuclear pore complexes in Xenopus egg extract. Biol Cell 72:25–29

    Article  CAS  PubMed  Google Scholar 

  16. Masui Y, Markert CL (1971) Cytoplasmic control of nuclear behavior during meiotic maturation of frog oocytes. J Exp Zool 177:129–145

    Article  CAS  PubMed  Google Scholar 

  17. Forbes DJ, Kirschner MW, Newport JW (1983) Spontaneous formation of nucleus-like structures around bacteriophage DNA microinjected into Xenopus eggs. Cell 34:13–23

    Article  CAS  PubMed  Google Scholar 

  18. Lohka MJ, Masui Y (1983) Formation in vitro of sperm pronuclei and mitotic chromosomes induced by amphibian ooplasmic components. Science 220:719–721

    Article  CAS  PubMed  Google Scholar 

  19. Newport JW, Kirschner MW (1984) Regulation of the cell cycle during early Xenopus development. Cell 37:731–742

    Article  CAS  PubMed  Google Scholar 

  20. Mitchison T, Kirschner M (1984) Dynamic instability of microtubule growth. Nature 312:237–242

    Article  CAS  PubMed  Google Scholar 

  21. Blow JJ, Laskey RA (1986) Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell 47:577–587

    Article  CAS  PubMed  Google Scholar 

  22. Verma R et al (2004) Ubistatins inhibit proteasome-dependent degradation by binding the ubiquitin chain. Science 306:117–120

    Article  CAS  PubMed  Google Scholar 

  23. Yu H et al (1996) Identification of a novel ubiquitin-conjugating enzyme involved in mitotic cyclin degradation. Curr Biol 6:455–466

    Article  CAS  PubMed  Google Scholar 

  24. Murray AW, Solomon MJ, Kirschner MW (1989) The role of cyclin synthesis and degradation in the control of maturation promoting factor activity. Nature 339:280–286

    Article  CAS  PubMed  Google Scholar 

  25. Murray AW, Kirschner MW (1989) Cyclin synthesis drives the early embryonic cell cycle. Nature 339:275–280

    Article  CAS  PubMed  Google Scholar 

  26. Lohka MJ, Hayes MK, Maller JL (1988) Purification of maturation-promoting factor, an intracellular regulator of early mitotic events. Proc Natl Acad Sci U S A 85:3009–3013

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  27. Pomerening JR, Kim SY, Ferrell JE Jr (2005) Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations. Cell 122:565–578

    Article  CAS  PubMed  Google Scholar 

  28. Lohka MJ, Masui Y (1984) Roles of cytosol and cytoplasmic particles in nuclear envelope assembly and sperm pronuclear formation in cell-free preparations from amphibian eggs. J Cell Biol 98:1222–1230

    Article  CAS  PubMed  Google Scholar 

  29. Finlay DR et al (1987) Inhibition of in vitro nuclear transport by a lectin that binds to nuclear pores. J Cell Biol 104:189–200

    Article  CAS  PubMed  Google Scholar 

  30. Newmeyer DD, Finlay DR, Forbes DJ (1986) In vitro transport of a fluorescent nuclear protein and exclusion of non-nuclear proteins. J Cell Biol 103:2091–2102

    Article  CAS  PubMed  Google Scholar 

  31. Newport J, Spann T (1987) Disassembly of the nucleus in mitotic extracts: membrane vesicularization, lamin disassembly, and chromosome condensation are independent processes. Cell 48:219–230

    Article  CAS  PubMed  Google Scholar 

  32. Newport J (1987) Nuclear reconstitution in vitro: stages of assembly around protein-free DNA. Cell 48:205–217

    Article  CAS  PubMed  Google Scholar 

  33. Cross MK, Powers M (2008) Obtaining eggs from Xenopus laevis females. J Vis Exp 18:e890

    Google Scholar 

  34. Cross MK, Powers M (2008) Preparation and fractionation of Xenopus laevis egg extracts. J Vis Exp 18:e891

    Google Scholar 

  35. Willis J et al (2012) Study of the DNA damage checkpoint using Xenopus egg extracts. J Vis Exp 69:e4449

    PubMed  Google Scholar 

  36. Walter J, Sun L, Newport J (1998) Regulated chromosomal DNA replication in the absence of a nucleus. Mol Cell 1:519–529

    Article  CAS  PubMed  Google Scholar 

  37. Saito-Diaz K et al (2013) The way Wnt works: components and mechanism. Growth Factors 31:1–31

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  38. Lee E et al (2003) The roles of APC and Axin derived from experimental and theoretical analysis of the Wnt pathway. PLoS Biol 1:E10

    Article  PubMed Central  PubMed  Google Scholar 

  39. Lee E, Salic A, Kirschner MW (2001) Physiological regulation of [beta]-catenin stability by Tcf3 and CK1epsilon. J Cell Biol 154:983–993

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  40. Seeling JM et al (1999) Regulation of beta-catenin signaling by the B56 subunit of protein phosphatase 2A. Science 283:2089–2091

    Article  CAS  PubMed  Google Scholar 

  41. Guger KA, Gumbiner BM (1995) Beta-Catenin has Wnt-like activity and mimics the Nieuwkoop signaling center in Xenopus dorsal-ventral patterning. Dev Biol 172:115–125

    Article  CAS  PubMed  Google Scholar 

  42. Cselenyi CS et al (2008) LRP6 transduces a canonical Wnt signal independently of Axin degradation by inhibiting GSK3’s phosphorylation of beta-catenin. Proc Natl Acad Sci U S A 105:8032–8037

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  43. Jernigan KK et al (2010) Gbetagamma activates GSK3 to promote LRP6-mediated beta-catenin transcriptional activity. Sci Signal 3:ra37

    Article  PubMed Central  PubMed  Google Scholar 

  44. Major MB et al (2007) Wilms tumor suppressor WTX negatively regulates WNT/beta-catenin signaling. Science 316:1043–1046

    Article  CAS  PubMed  Google Scholar 

  45. Zhang JH, Chung TD, Oldenburg KR (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 4:67–73

    Article  PubMed  Google Scholar 

  46. Baldwin TO (1996) Firefly luciferase: the structure is known, but the mystery remains. Structure 4:223–228

    Article  CAS  PubMed  Google Scholar 

  47. Sive HL, Grainger RM, Harland RM (2000) Early development of Xenopus laevis: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY

    Google Scholar 

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Acknowledgments

We thank Laurie Lee for critical reading of the manuscript. M.R.B. is supported by a National Cancer Institute training grant (T32 CA119925). E.L. is supported by the National Institutes of Health (R01GM081635 and R01GM103926). R.Y. is supported by Award Number 8UL1TR000149 from the National Center for Advancing Translational Sciences and the CTRC P30 Cancer Center Support Grant from the National Cancer Institute (CA054174). S.R.H. is supported by the National Cancer Institute (P50 CA095103).

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Correspondence to Ethan Lee .

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Broadus, M.R., Yew, P.R., Hann, S.R., Lee, E. (2015). Small-Molecule High-Throughput Screening Utilizing Xenopus Egg Extract. In: Hempel, J., Williams, C., Hong, C. (eds) Chemical Biology. Methods in Molecular Biology, vol 1263. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2269-7_5

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  • DOI: https://doi.org/10.1007/978-1-4939-2269-7_5

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2268-0

  • Online ISBN: 978-1-4939-2269-7

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