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Crystallization of Z-DNA in Complex with Chemical and Z-DNA Binding Z-Alpha Protein

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Z-DNA

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2651))

Abstract

The molecular basis of Z-DNA recognition and stabilization is mostly discovered via X-ray crystallography. The sequences composed with alteration of purine and pyrimidine are known to adopt Z-DNA conformation. Due to the energy penalty for forming Z-DNA, the small molecular stabilizer or Z-DNA-specific binding protein is required for DNA to adopt Z conformation prior to crystallizing Z-DNA. Here we described the methods ranging from preparation of DNA and Z-alpha protein to crystallization of Z-DNA in detail.

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Acknowledgments

This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Ministry of Education, Science, and Technology (MSIT) of Korean government (2020RC1C1C1007371 to D.K.).

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Correspondence to Doyoun Kim .

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© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Kang, M., Kim, D. (2023). Crystallization of Z-DNA in Complex with Chemical and Z-DNA Binding Z-Alpha Protein. In: Kim, K.K., Subramani, V.K. (eds) Z-DNA. Methods in Molecular Biology, vol 2651. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3084-6_4

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  • DOI: https://doi.org/10.1007/978-1-0716-3084-6_4

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3083-9

  • Online ISBN: 978-1-0716-3084-6

  • eBook Packages: Springer Protocols

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