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Isolation and Compositional Analysis of Glycosaminoglycans

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Chemokine-Glycosaminoglycan Interactions

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2597))

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Abstract

The compositional and structural analysis of GAGs is challenging due to their heterogenous structures. Strong anion exchange (SAX) HPLC can aid in the compositional analysis of GAGs and can separate complex mixtures based on charge and degree of sulfation. Herein we describe the digestion and release of GAGs from tissue, and the compositional analysis using SAX-HPLC.

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References

  1. Ly M, Leach FE 3rd, Laremore TN, Toida T, Amster IJ, Linhardt RJ (2011) The proteoglycan bikunin has a defined sequence. Nat Chem Biol 7(11):827–833. https://doi.org/10.1038/nchembio.673

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Lindahl U, Couchman J, Kimata K, Esko JD (2009) Proteoglycans and sulfated glycosaminoglycans. In: Varki ACR, Esko JD et al (eds) Essentials of glycobiology. Cold Spring Harbor Laboratory Press, NY

    Google Scholar 

  3. Sugahara K, Kitagawa H (2000) Recent advances in the study of the biosynthesis and functions of sulfated glycosaminoglycans. Curr Opin Struct Biol 10(5):518–527. https://doi.org/10.1016/S0959-440X(00)00125-1

    Article  CAS  PubMed  Google Scholar 

  4. Pepi LE, Sanderson P, Stickney M, Amster IJ (2021) Developments in mass spectrometry for glycosaminoglycan analysis: a review. Mol Cell Proteomics 20:100025

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Wei J, Wu J, Tang Y, Ridgeway ME, Park MA, Costello CE et al (2019) Characterization and quantification of highly sulfated glycosaminoglycan isomers by gated-trapped ion mobility spectrometry negative electron transfer dissociation MS/MS. Anal Chem 91(4):2994–3001. https://doi.org/10.1021/acs.analchem.8b05283

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Wu J, Wei J, Hogan JD, Chopra P, Joshi A, Lu W et al (2018) Negative electron transfer dissociation sequencing of 3-O-sulfation-containing Heparan sulfate oligosaccharides. J Am Soc Mass Spectrom 29(6):1262–1272. https://doi.org/10.1007/s13361-018-1907-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Turiák L, Tóth G, Ozohanics O, Révész Á, Ács A, Vékey K et al (2018) Sensitive method for glycosaminoglycan analysis of tissue sections. J Chromatogr A 1544:41–48. https://doi.org/10.1016/j.chroma.2018.02.034

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Huang Y, Yu X, Mao Y, Costello CE, Zaia J, Lin C (2013) De novo sequencing of Heparan sulfate oligosaccharides by electron-activated dissociation. Anal Chem 85(24):11979–11986. https://doi.org/10.1021/ac402931j

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Stickney M, Xia Q, Amster IJ (2019) Investigation of electrospray for a capillary electrophoresis–mass spectrometry interface in reverse polarity and negative ion mode. Eur J Mass Spectrom 25(1):157–163. https://doi.org/10.1177/1469066719828192

    Article  CAS  Google Scholar 

  10. Klein DR, Leach Iii FE, Amster IJ, Brodbelt JS (2019) Structural characterization of glycosaminoglycan carbohydrates using ultraviolet photodissociation. Anal Chem. https://doi.org/10.1021/acs.analchem.9b00521

  11. Pepi LE, Leach FE III, Klein DR, Brodbelt JS, Amster IJ (2021) Investigation of the experimental parameters of ultraviolet photodissociation for the structural characterization of chondroitin sulfate glycosaminoglycan isomers. J Am Soc Mass Spectrom 32(7):1759–1770. https://doi.org/10.1021/jasms.1c00119

  12. Pepi LE, Sasiene ZJ, Mendis PM, Jackson GP, Amster IJ (2020) Structural characterization of sulfated glycosaminoglycans using charge-transfer dissociation. J Am Soc Mass Spectrom 31(10):2143–2153

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Agyekum I, Pepi L, Yu Y, Li J, Yan L, Linhardt RJ et al (2018) Structural elucidation of fucosylated chondroitin sulfates from sea cucumber using FTICR-MS/MS. Eur J Mass Spectrom 24(1):157–167

    Article  CAS  Google Scholar 

  14. Zaia J (2009) On-line separations combined with MS for analysis of glycosaminoglycans. Mass Spectrom Rev 28(2):254–272. https://doi.org/10.1002/mas.20200

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Zaia J (2013) Glycosaminoglycan glycomics using mass spectrometry. Mol Cell Proteomics 12(4):885–892. https://doi.org/10.1074/mcp.R112.026294

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Kailemia MJ, Ruhaak LR, Lebrilla CB, Amster IJ (2014) Oligosaccharide analysis by mass spectrometry: a review of recent developments. Anal Chem 86(1):196–212. https://doi.org/10.1021/ac403969n

    Article  CAS  PubMed  Google Scholar 

  17. Zhang Q, Chen X, Zhu Z, Zhan X, Wu Y, Song L et al (2013) Structural analysis of low molecular weight heparin by ultraperformance size exclusion chromatography/time of flight mass spectrometry and capillary zone electrophoresis. Anal Chem 85(3):1819–1827. https://doi.org/10.1021/ac303185w

    Article  CAS  PubMed  Google Scholar 

  18. Zaia J, Khatri K, Klein J, Shao C, Sheng Y, Viner R (2016) Complete molecular weight profiling of low-molecular weight heparins using size exclusion chromatography-ion suppressor-high-resolution mass spectrometry. Anal Chem 88(21):10654–10660. https://doi.org/10.1021/acs.analchem.6b03081

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Du JY, Chen LR, Liu S, Lin JH, Liang QT, Lyon M et al (2016) Ion-pairing liquid chromatography with on-line electrospray ion trap mass spectrometry for the structural analysis of N-unsubstituted heparin/heparan sulfate. J Chromatogr B 1028:71–76. https://doi.org/10.1016/j.jchromb.2016.06.006

    Article  CAS  Google Scholar 

  20. Doneanu CE, Chen W, Gebler JC (2009) Analysis of oligosaccharides derived from heparin by ion-pair reversed-phase chromatography/mass spectrometry. Anal Chem 81(9):3485–3499. https://doi.org/10.1021/ac802770r

    Article  CAS  PubMed  Google Scholar 

  21. Miller RL, Guimond SE, Shivkumar M, Blocksidge J, Austin JA, Leary JA et al (2016) Heparin isomeric oligosaccharide separation using volatile salt strong anion exchange chromatography. Anal Chem 88(23):11542–11550. https://doi.org/10.1021/acs.analchem.6b02801

    Article  CAS  PubMed  Google Scholar 

  22. Lawrence R, Olson SK, Steele RE, Wang L, Warrior R, Cummings RD et al (2008) Evolutionary differences in glycosaminoglycan fine structure detected by quantitative glycan reductive isotope labeling. J Biol Chem 283(48):33674–33684. https://doi.org/10.1074/jbc.M804288200

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Warda M, Toida T, Zhang F, Sun P, Munoz E, Xie J et al (2006) Isolation and characterization of heparan sulfate from various murine tissues. Glycoconj J 23(7):555–563

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Huang H, Liu S, Du J, Lin J, Liang Q, Liu S et al (2020) Structural analysis of glycosaminoglycans from Colla corii asini by liquid chromatography-electrospray ion trap mass spectrometry. Glycoconj J 37(2):201–207

    Article  CAS  PubMed  Google Scholar 

  25. Liang A, Desai U (2022) Advances in studying glycosaminoglycan–protein interactions using capillary electrophoresis. In: Glycosaminoglycans. Springer, New York, pp 365–387

    Chapter  Google Scholar 

  26. Midura RJ, Cali V, Lauer ME, Calabro A, Hascall VC (2018) Quantification of hyaluronan (HA) using a simplified fluorophore-assisted carbohydrate electrophoresis (FACE) procedure. Methods Cell Biol 143:297–316

    Article  CAS  PubMed  Google Scholar 

  27. Stickney M, Sanderson P, Leach FE III, Zhang F, Linhardt RJ, Amster IJ (2019) Online capillary zone electrophoresis negative electron transfer dissociation tandem mass spectrometry of glycosaminoglycan mixtures. Int J Mass Spectrom 445:116209

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Sun Y, Tsui Y-k, Yu M, Lyu M, Cheung K, Kao R et al (2022) Integration of a miniaturized DMMB assay with high-throughput screening for identifying regulators of proteoglycan metabolism. Sci Rep 12(1):1–9

    CAS  Google Scholar 

  29. Zhang M, An Y, Zhang L (2022) Quantitative disaccharide profiling of Glycosaminoglycans from two different preparations by PMP and deuterated PMP labeling. In: Glycosaminoglycans. Springer, New York, pp 111–119

    Chapter  Google Scholar 

  30. Spelta F, Liverani L, Peluso A, Marinozzi M, Urso E, Guerrini M et al (2019) SAX-HPLC and HSQC NMR spectroscopy: orthogonal methods for characterizing heparin batches composition. Front Med 6:78

    Article  Google Scholar 

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Acknowledgments

This work was supported by NIH grant R24GM137782 to P. A.

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Correspondence to Parastoo Azadi .

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Archer-Hartmann, S., Pepi, L.E., Heiss, C., Azadi, P. (2023). Isolation and Compositional Analysis of Glycosaminoglycans. In: Lucas, A.R. (eds) Chemokine-Glycosaminoglycan Interactions. Methods in Molecular Biology, vol 2597. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2835-5_14

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  • DOI: https://doi.org/10.1007/978-1-0716-2835-5_14

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2834-8

  • Online ISBN: 978-1-0716-2835-5

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